View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20431_high_2 (Length: 394)
Name: NF20431_high_2
Description: NF20431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20431_high_2 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 39083267 - 39082888
Alignment:
| Q |
1 |
aacaacaacaatacatcatgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaac |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083267 |
aacaacaacaatgcatcatgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaac |
39083168 |
T |
|
| Q |
101 |
cagactatgttccttctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083167 |
cagactatgttccttctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacgga |
39083068 |
T |
|
| Q |
201 |
gttagctaacggcatcttcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaa |
300 |
Q |
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|||| |||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39083067 |
gttaagtaacggtatcttcattgctttcactgtcaaccatgttgttttagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaa |
39082968 |
T |
|
| Q |
301 |
ggttcccacaaaatatccaaactcccttcatttcaacgttggttcccaaacaacgttgaacttccaatacgatttccttt |
380 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39082967 |
ggttcccacaaaatatccaaactcccttcatttcaacgttggttcccaaacaacgttgaacttccaatacgatttccttt |
39082888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 380
Target Start/End: Complemental strand, 39088918 - 39088542
Alignment:
| Q |
4 |
aacaacaatacatcatgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaaccag |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| || || ||||||||||||||| |
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| T |
39088918 |
aacaacaacacatcatgttccatcatttgcaacaacattggtgctctcttcatccacgccaaagcggaaaacacaaccgtatcagacatccttaaaccaa |
39088819 |
T |
|
| Q |
104 |
actatgttccttctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagtt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| ||| |||||||||||||| |
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| T |
39088818 |
actatgttccttctatagttcactcatttttcccacttaacggagttaaaaactacgaagccacttcacaaccaattctaggagttcaagtaacggagtt |
39088719 |
T |
|
| Q |
204 |
agctaacggcatcttcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggt |
303 |
Q |
| |
|
|||||| ||||||||||||||||| ||| ||||||| | ||||| ||||||||| |||||||||||| ||||| ||||||| ||||||||||| |
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| T |
39088718 |
agctaatggcatcttcattggtttgactctcaaccacgttgtttgtgacggcaagatgttttggcatttcatcaatacttggtcacaaatctcaaaaaac |
39088619 |
T |
|
| Q |
304 |
tcccacaaaatatccaaactcccttcatttcaacgttggttcccaaacaacgttgaacttccaatacgatttccttt |
380 |
Q |
| |
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| ||| | ||| | ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |
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| T |
39088618 |
ttccagagtataccaaaactcccttcatttcaacgttggttcccaaacgaagttgaacttccaatacgctttccttt |
39088542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 39092312 - 39091933
Alignment:
| Q |
1 |
aacaacaacaatacatcatgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaac |
100 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||| |||||||| ||||| |||| || || |||||||| ||| |
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| T |
39092312 |
aacaacaacaacacatcatgttccatcctttgcaacaacctcggtgctctcttcgtccatgcaaaagcggaaaatacaaccgtatcaaacatccttgaac |
39092213 |
T |
|
| Q |
101 |
cagactatgttccttctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacgga |
200 |
Q |
| |
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|| |||| |||||||| || ||||| |||||||||||||| ||||| |||||||| |||||||||| || |||||||| |||| |||||||||||||| |
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| T |
39092212 |
caaactacgttccttccattgttcattcatttttcccactaaacggtgttaaaaaccacgaagccacttcacaaccaatcttagccgtccaagtaacgga |
39092113 |
T |
|
| Q |
201 |
gttagctaacggcatcttcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaa |
300 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| |
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| T |
39092112 |
gttagccaacggcatcttcattggtttcactgtcaaccatgttgtttcagacggcaagtcattttggcatttcgtcaatacttggtcacaaatctccaaa |
39092013 |
T |
|
| Q |
301 |
ggttcccacaaaatatccaaactcccttcatttcaacgttggttcccaaacaacgttgaacttccaatacgatttccttt |
380 |
Q |
| |
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|||||| || || | |||||||||||||| |||||||||||||||| || |||||||||||||| |||| ||||| |
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| T |
39092012 |
aactcccacgaagtaacaaaactcccttcattcaaacgttggttcccaaatgacattgaacttccaatatgattcccttt |
39091933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 124 - 348
Target Start/End: Complemental strand, 39071688 - 39071464
Alignment:
| Q |
124 |
cactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatcttcattg |
223 |
Q |
| |
|
||||| ||||| ||| |||||||| |||||||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||| ||| ||||||||| |
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| T |
39071688 |
cactcgttttttccatttaacggcgttaaaaactacgaagctacgtcaaaaccaactctagcagtccaagtaacggagttaagtaatggcgtcttcattg |
39071589 |
T |
|
| Q |
224 |
gtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatccaaact |
323 |
Q |
| |
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||||| |||||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||| |
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| T |
39071588 |
aattcacatgcaaccacattgttgcagacgccaagtcattttggcatttcgtcaattcttggtcccaaatcttgaaaggttcccacaaaatatcaaaact |
39071489 |
T |
|
| Q |
324 |
cccttcatttcaacgttggttccca |
348 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
39071488 |
cccttcatttcaacgttggttccca |
39071464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 39071811 - 39071753
Alignment:
| Q |
1 |
aacaacaacaatacatcatgttccatcatttgcaacaaccttggtgctctcttcatcca |
59 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||||||| || ||| |||| |
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|
| T |
39071811 |
aacaacaacaacacatcatgttccataatttgcaacaaccttggtgccctattcgtcca |
39071753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 39075922 - 39075867
Alignment:
| Q |
249 |
agacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggtt |
304 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||| ||||||||||| |||||| |
|
|
| T |
39075922 |
agacgccaagtcattttggcatttcatcaactcttgggctgaaatctcacaaggtt |
39075867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 39098583 - 39098306
Alignment:
| Q |
16 |
tcatgttccatcatttgcaacaaccttggtgctctcttcatccacgcaaaagcagaaaacacaagtgtttccgacatccttaaaccagactatgttcctt |
115 |
Q |
| |
|
||||||| |||| |||| |||||||| ||||| | || || || ||| ||| |||||||||||||| | ||| || |||||||| |||||||||||| |
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|
| T |
39098583 |
tcatgtttcatcctttgtaacaacctaggtgcgttatttattcatgcagcagctgaaaacacaagtgtcttcgatattgttaaaccaaactatgttcctt |
39098484 |
T |
|
| Q |
116 |
ctatagttcactcatttttcccacttaacggcattaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcat |
215 |
Q |
| |
|
| || |||||||| ||||| ||| |||| | ||||||||||||| ||| || ||||| | || ||||| ||||| || ||| | | | | || || |
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|
| T |
39098483 |
ccattgttcactctttttttccatttaataaagtaaaaaactacgaaggcacatcaaaaccattgcttgcagttcaagttactgagcttgttgatggtat |
39098384 |
T |
|
| Q |
216 |
cttcattggtttcactgtcaaccatgctgtttcagacggcaagtcattttggcatttcgtcaattcttggtctgaaat |
293 |
Q |
| |
|
|||||||| ||| | |||| |||| |||| || || ||||| |||||||||||| ||||||| ||||||||||| |
|
|
| T |
39098383 |
tttcattggcttctcaatcaatcatgttgttgtcgatggtaagtcgttttggcatttcatcaattcatggtctgaaat |
39098306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 7399146 - 7399098
Alignment:
| Q |
256 |
aagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggtt |
304 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||||||| || |||||| |
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|
| T |
7399146 |
aagtcattttggcatttcatcaactcttgggctgaaatcgcacaaggtt |
7399098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 149 - 344
Target Start/End: Complemental strand, 5215 - 5020
Alignment:
| Q |
149 |
ttaaaaactacgaagccacgtctcaaccaattctagcagtccaagtaacggagttagctaacggcatcttcattggtttcactgtcaaccatgctgtttc |
248 |
Q |
| |
|
||||||||||||||| || || |||||| | || ||| |||||||||||||||||| | |||||||||||||||| ||||| || ||||| | || |
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| T |
5215 |
ttaaaaactacgaaggaacatcacaaccattacttgcaatccaagtaacggagttagttgacggcatcttcattggcttcacagttaaccacgtgattgt |
5116 |
T |
|
| Q |
249 |
agacggcaagtcattttggcatttcgtcaattcttggtctgaaatctcaaaaggttcccacaaaatatccaaactcccttcatttcaacgttggtt |
344 |
Q |
| |
|
|| || | ||| |||||||||||| ||||||| ||| |||||||||| ||||||| | |||||||||||||| || ||||| | |||||||| |
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|
| T |
5115 |
tgatggtacgtcgttttggcatttcatcaattcgtgggctgaaatctcgaaaggttgtcttaaaatatccaaacttccaacatttgatcgttggtt |
5020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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