View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20431_high_6 (Length: 325)
Name: NF20431_high_6
Description: NF20431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20431_high_6 |
 | |
|
| [»] scaffold0016 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 4908374 - 4908056
Alignment:
| Q |
1 |
ctgaaccaacttgttaacatctctaggttgctgttccactaatacagatggcttttttgaagaatattgagaaggttgtattgtcatagccttcgcggcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4908374 |
ctgaaccaacttgttaacatctctaggttgctgttccactaatacagatggcttttttgaagaatattgagaaggttgtattgtcatagccttcgcggcc |
4908275 |
T |
|
| Q |
101 |
ggcaagaaacggttcatcatgaagtctcttgtttgttgatctgtagaaaatgttccaaacttcttagcttccaagttatctaatccacttacaccactca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4908274 |
ggcaagaaacggttcatcatgaagtctcttgtttgttgatctgtagaaaatgttccaaacttcttagcttccaagttatctaatccacttacaccactca |
4908175 |
T |
|
| Q |
201 |
cactacagttcaaagagaatgattctgttaaatgtgacagtgactcaactgcatctgaataagcatcatcattctccacttccttaacattagaccttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4908174 |
cactacagttcaaagagaatgattctgttaaatgtgacagtgactcaactgcatctgaataagcatcatcattctccacttccttaacattagaccttct |
4908075 |
T |
|
| Q |
301 |
actctcaattctcttctca |
319 |
Q |
| |
|
|||| ||||| |||||||| |
|
|
| T |
4908074 |
actcacaattttcttctca |
4908056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 21147337 - 21147295
Alignment:
| Q |
266 |
tcatcattctccacttccttaacattagaccttctactctcaa |
308 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
21147337 |
tcatcattctcctcttccttaacattagactttctattctcaa |
21147295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 295
Target Start/End: Complemental strand, 21352265 - 21352236
Alignment:
| Q |
266 |
tcatcattctccacttccttaacattagac |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21352265 |
tcatcattctccacttccttaacattagac |
21352236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 74875 - 74919
Alignment:
| Q |
266 |
tcatcattctccacttccttaacattagaccttctactctcaatt |
310 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| ||||| |||||||| |
|
|
| T |
74875 |
tcattattctcctcttccttaacattagactttctattctcaatt |
74919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University