View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20431_low_1 (Length: 764)
Name: NF20431_low_1
Description: NF20431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20431_low_1 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 10 - 746
Target Start/End: Original strand, 23452309 - 23453050
Alignment:
| Q |
10 |
gagcagagacattttaggagattgatgaatggctacactagacctgagaaagaacttaaatgatttccaccctcttctgaaaacgccatgctaaatccta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23452309 |
gagcagagacattttaggagattgatgaatggctacactagacctgagaaagaacttaaatgatttccaccctcttctgaaaacgccatgctaaatccta |
23452408 |
T |
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| Q |
110 |
accaatttgcttttacgtaccaaactcttgaggaaaaaacagacattcaaaactaggtgatcaacggatttcccctcaccataacca----ctaacgcaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23452409 |
accaatttgcttttacgtaccaaactcttgaggaaaaaacagacattcaaaactaggtgatcaacggatttcccctcaccataaccaaccactaacgcaa |
23452508 |
T |
|
| Q |
206 |
acttgatcattattcattactatccataatcccccacctctcaaaattagctctgggtggaacttttttaagatcgttccccctttgcaatatagaatta |
305 |
Q |
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|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23452509 |
acttgatcatta-------ctatccataatcccccacctcgcaaaattagctctgggtggaacttttttaagatcgttccccctttgcaatatagaatta |
23452601 |
T |
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| Q |
306 |
aatttaaaca---tgttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcacctctgaactatcgtgtgtgaatgt |
402 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23452602 |
aatttaaacaatatgttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcacctctgaactatcgtgtgtgaatgt |
23452701 |
T |
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| Q |
403 |
taagatggtatgtg-----aagacagtatataagcttgtgcttttaatgagnnnnnnnctacatttacaaatccagttttaaaaataccaagttaaacag |
497 |
Q |
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| T |
23452702 |
taagatggtatgtgcttaaaagacagtatataagcttgtgcttttaatgagaaaaaaactacatttacaaatccagttttaaaaataccaagttacacag |
23452801 |
T |
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| Q |
498 |
acagatagaaattttcaaagttctaatattaagaaataaaaatttgtccatccaactcaacaattgttaggcaattaaaggttaattcttataactcaat |
597 |
Q |
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| T |
23452802 |
acagatagaaattttcaaagttctaatattaagaaataaaaatttgtccatcaaactcaacaattgttaggcaattaaaggttaattcttataacacaat |
23452901 |
T |
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| Q |
598 |
atgaacaattataaatctttacaatatacacagattctgtaaaatttattcatagattacaatcaattacaaccagctggttttcaaacnnnnnnntaca |
697 |
Q |
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| T |
23452902 |
atgaacaattataaatctttacaatatacacagattctgtaaaatttattcatagattacaatcaattacaaccagctggttttcaaacaaaaaattaca |
23453001 |
T |
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| Q |
698 |
acctaattgtcttgcttcatccatgacgcgagcaaactaagttaatgtg |
746 |
Q |
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| T |
23453002 |
acctaattgtcttgcttcatccatgacgcaagcaaactaagttaatgtg |
23453050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 293 - 378
Target Start/End: Complemental strand, 23869664 - 23869576
Alignment:
| Q |
293 |
caatatagaattaaatttaaaca---tgttgatatatccttgagctggatatagaatcaacacagcatgtgattctctctctggctcac |
378 |
Q |
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|||||||||||||| ||| |||| | || ||||||||||||||| || | ||||||| |||| ||||||||| ||||||| |||||| |
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| T |
23869664 |
caatatagaattaagtttgaacaatgtattcatatatccttgagcttgacacagaatcatcacatcatgtgattttctctctagctcac |
23869576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 360
Target Start/End: Complemental strand, 4258793 - 4258751
Alignment:
| Q |
318 |
ttgatatatccttgagctggatatagaatcaacacagcatgtg |
360 |
Q |
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| T |
4258793 |
ttgatatggccttgagctggatatggaatcaacacagcatgtg |
4258751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 318 - 360
Target Start/End: Original strand, 1282944 - 1282986
Alignment:
| Q |
318 |
ttgatatatccttgagctggatatagaatcaacacagcatgtg |
360 |
Q |
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| T |
1282944 |
ttgatatggccttgagctggatatggaatcaacacagcatgtg |
1282986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 1269 - 1314
Alignment:
| Q |
318 |
ttgatatatccttgagctggatatagaatcaacacagcatgtgatt |
363 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
1269 |
ttgatatggccttgagctggatatggaatgaacacagcatgtgatt |
1314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 1676032 - 1676077
Alignment:
| Q |
318 |
ttgatatatccttgagctggatatagaatcaacacagcatgtgatt |
363 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
1676032 |
ttgatatggccttgagctggatatggaatgaacacagcatgtgatt |
1676077 |
T |
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