View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20431_low_4 (Length: 360)
Name: NF20431_low_4
Description: NF20431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20431_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 25903483 - 25903691
Alignment:
| Q |
1 |
ggcattgatatcgaagaaaacccaagacgaattacgttcgaaattcgtttccatgactgacattcaacgagcttctcttccccatgcgctttgtggtcat |
100 |
Q |
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| T |
25903483 |
ggcattgatatcgaagaaaacccaagacgaattacgttcgaaattcgtttccatgactgacattcaacgagcttctcttccccatgcgctttgtggtcgt |
25903582 |
T |
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| Q |
101 |
gatgttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgttgttttgattagtgtatttgggttaggggcttagg |
200 |
Q |
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| T |
25903583 |
gatgttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgttgttttgattagtgtatttgggttaggggcttagg |
25903682 |
T |
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| Q |
201 |
gttttagtt |
209 |
Q |
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||||||||| |
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| T |
25903683 |
gttttagtt |
25903691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 271 - 338
Target Start/End: Original strand, 25903753 - 25903820
Alignment:
| Q |
271 |
ttaatcactaatttaattgatattttgctgctagaaattgtataggttgattaatttagtcacttaat |
338 |
Q |
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| T |
25903753 |
ttaatcactaatttaattgatattttgctgctagaaattgtataggttgattaatttagtcacttaat |
25903820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 40427592 - 40427430
Alignment:
| Q |
4 |
attgatatcgaagaaaacccaagacgaattacgttcgaaattcgtttccatgactgacattcaacgagcttctcttccccatgcgctttgtggtcatgat |
103 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||| | |||| |
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| T |
40427592 |
attgatatcgaagaaaacccaagacgaattgcattcgaaattcgtttccatgactaaaattcaacgagcttctcttcctcatgcgctttgtggccgtgat |
40427493 |
T |
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| Q |
104 |
gttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgtt |
166 |
Q |
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| T |
40427492 |
gttcttggtgccgccaaaactggttctggaaaaacacttgctttcattattcctgtgagtgtt |
40427430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 40427331 - 40427267
Alignment:
| Q |
271 |
ttaatcactaatttaattgatattttgctgctagaaattgtataggttgattaatttagtcactt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40427331 |
ttaatcactaatttaattgatattttgctgctagaaattgtataggttgattaatttagtcactt |
40427267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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