View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20431_low_6 (Length: 351)
Name: NF20431_low_6
Description: NF20431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20431_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 14201407 - 14201086
Alignment:
| Q |
19 |
actccgttacctcggtggccataatcgcgttctctccgttgatcgctctatacaattctccggtcagtattattagatgtaatagttagttacaataatt |
118 |
Q |
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| T |
14201407 |
actccgttacctcggtggccataatcgcgttctctccgttgatcgctctatacaattctccggtcagtattattagatgtaatagttagttacaataatt |
14201308 |
T |
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| Q |
119 |
agttcaatttgaaattgattttgaagctgtttttgttacagaactgttattgaagctgaaagagctctgcagttcatccgtaacgcaacttcgctgtcag |
218 |
Q |
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| T |
14201307 |
agttcaatttgaaattgattttgaagctgtttttgttacagaactgttattgaagctgaaagagctctgcagttcatccgtaacgcaacttcgctgtcag |
14201208 |
T |
|
| Q |
219 |
ttacccgctgaagacctcgacgctttggtttccatcacctccgacgaagatctcatcaatctaatcgaagaatatgatcgtactgcatcaccacaatcac |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14201207 |
ttacctgctgaagacctcgacgctttggtttccatcacctccgacgaagatctcatcaatctaatcgaagaatatgatcgtactgcatcaccacaatcac |
14201108 |
T |
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| Q |
319 |
agttaaagatcaaagccttcat |
340 |
Q |
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|||||||||||||||||||||| |
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| T |
14201107 |
agttaaagatcaaagccttcat |
14201086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 37701816 - 37701778
Alignment:
| Q |
84 |
agtattattagatgtaatagttagttacaataattagtt |
122 |
Q |
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| T |
37701816 |
agtattattagttgtaatagttagttacaataattagtt |
37701778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 29051289 - 29051322
Alignment:
| Q |
89 |
tattagatgtaatagttagttacaataattagtt |
122 |
Q |
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| T |
29051289 |
tattagatgtaatagttagttacaataattagtt |
29051322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 3997280 - 3997247
Alignment:
| Q |
89 |
tattagatgtaatagttagttacaataattagtt |
122 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
3997280 |
tattagatgtaacagttagttacaataattagtt |
3997247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 37864101 - 37864134
Alignment:
| Q |
89 |
tattagatgtaatagttagttacaataattagtt |
122 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
37864101 |
tattagatgtaatagttggttacaataattagtt |
37864134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 3320660 - 3320688
Alignment:
| Q |
93 |
agatgtaatagttagttacaataattagt |
121 |
Q |
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| T |
3320660 |
agatgtaatagttagttacaataattagt |
3320688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 116
Target Start/End: Complemental strand, 42603706 - 42603678
Alignment:
| Q |
88 |
ttattagatgtaatagttagttacaataa |
116 |
Q |
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| T |
42603706 |
ttattagatgtaatagttagttacaataa |
42603678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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