View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20432_high_1 (Length: 457)
Name: NF20432_high_1
Description: NF20432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20432_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 21041578 - 21041808
Alignment:
| Q |
6 |
gtagataatactac-taattcttataaactttcattcaaacatgtaatctcatacttacacaacttgataatatctctcatttcgatgtgaatttttggt |
104 |
Q |
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| T |
21041578 |
gtagataatactaaataattcttataaattttcattcaaacatgtaatctcatacttacacaacctgataatatctctcattccgatgtgaatttttggt |
21041677 |
T |
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| Q |
105 |
ttatccatgtgtccttttcgattcgaagctttcaaaagccgctcattggtcatatcttgcgcaatccatcctcgtcacaccaatagactattccttgagg |
204 |
Q |
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| T |
21041678 |
ttatccatgtgtcctttttgattcgaagctttcagaagccgctcattggtcatgtcttgcgcaacccatcctcgtcacaccaatagaccattccttgagg |
21041777 |
T |
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| Q |
205 |
atttttaagacatacaattaagttgaacact |
235 |
Q |
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| T |
21041778 |
atttttaagacatacaattaagttcaacact |
21041808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 251 - 402
Target Start/End: Original strand, 21042236 - 21042387
Alignment:
| Q |
251 |
ttaaattgtagtcatagtctttgatattgtggaaaattaggttaaaatataatcaatgttgctaaaaattaaggttgtgattcagttgcaaagacataaa |
350 |
Q |
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| T |
21042236 |
ttaaattgtagtcatagtctttgatattgtggaaaattaggttaaaatataatcaatgttgctaaaaattaaggttgtgattcagttgcaaagacataaa |
21042335 |
T |
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| Q |
351 |
gaaaatcttgacattgcagcaactcttgcggccacacaacatttttgaaaat |
402 |
Q |
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| T |
21042336 |
gaaaatcttgacattgcagcaactcttgcggccacacaacatttttgaaaat |
21042387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 437
Target Start/End: Original strand, 21042439 - 21042473
Alignment:
| Q |
403 |
tgtttgaaatatttcatgcatgctctactactttc |
437 |
Q |
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| T |
21042439 |
tgtttgaaatatttcatgcatgctctactactttc |
21042473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 35 - 402
Target Start/End: Complemental strand, 26380777 - 26380409
Alignment:
| Q |
35 |
ttcattcaaacatgtaatctcatacttacacaact-tgataatatctctcatttcgatgtgaatttttggtttatccatgtgtccttttcgattcgaagc |
133 |
Q |
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| T |
26380777 |
ttcattcaaatatgcaatttcatacttacgcaactctcatgatctctctcattctgatgtgaattt--gattcatcgatgtatcattttcgattcaaagc |
26380680 |
T |
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| Q |
134 |
tttcaaaagccgctcattggtcatatcttgcgcaatccatcctcg-------------tcacaccaatagactattccttgaggatttttaagacataca |
220 |
Q |
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| T |
26380679 |
ttccagaaaccgctcattggtcatatcttgtgcaccttatcctcgccggcctcagatgtcacaccaatataccattccttgaggacttttaagacataca |
26380580 |
T |
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| Q |
221 |
attaagttgaacactgtcaggaataagattttaaattgtagtcatagtctttgatattgtggaaaattaggttaaaatataatcaatgttgctaaaaatt |
320 |
Q |
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|| | ||| |||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26380579 |
atata-----------tcatgaataagattttaaattgcagtcgcaatctttgatgttgtggaaaattaggttaaaatataatcaatgttgctaaaaatt |
26380491 |
T |
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| Q |
321 |
aaggttgtgattcagttgcaaagacataaagaaaatcttgacattgcagcaactcttgcggccacacaacatttttgaaaat |
402 |
Q |
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| T |
26380490 |
aaggttgtgattcagttgcaaacacataaagaaaatcttgacattgcagcaactcttgtggccacacaacatttttgaaaat |
26380409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 403 - 441
Target Start/End: Complemental strand, 26380357 - 26380319
Alignment:
| Q |
403 |
tgtttgaaatatttcatgcatgctctactactttcttgt |
441 |
Q |
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| T |
26380357 |
tgtttgaaatatttcaagcatgctctactactttcttgt |
26380319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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