View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20432_low_1 (Length: 684)
Name: NF20432_low_1
Description: NF20432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20432_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 267 - 673
Target Start/End: Complemental strand, 16663521 - 16663115
Alignment:
| Q |
267 |
caacataaccaaataggttaactagagcagaccacaagagtttggctttgtaaactaatcacataaacttttaagccaatcaaataaaatcaaaattaac |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16663521 |
caacataaccaaataggttaactagagcagaccacaagagtttggctttgtaaactaatcacataaacttttaagccaatcaaataaaatcaaaattaac |
16663422 |
T |
|
| Q |
367 |
tgaaaaggtaacaagagtgcccaaattatggttacagtcttttagcacaagattggcatggtaatgttggtttacaagtcaaaagaagtaacaattttag |
466 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
16663421 |
tgaaaaggtaacaagagtgcccaaatcatggttacagtcttttagcacaagattggcatggtaatgttggtttacaagtcaaaagaagtaaaaaatttag |
16663322 |
T |
|
| Q |
467 |
ataacataaccactgcaaattttgtccaaccttcaaaatactactagtagatatgagttatatcagacatttatcataaacgtttccattcagcacatag |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16663321 |
ataacataaccactgcaaattttgtccaaccttcaaaatactactagtagatatgagttatatcagacatttatcataaacgtttccattcagcacatag |
16663222 |
T |
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| Q |
567 |
aaaagcaagaaaactagacattcttgattacaaggtgatccaacatactctcaagttccttcagataatcctcaagaacatctacttcattcccctggtt |
666 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16663221 |
aaaagcaagaaaactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggtt |
16663122 |
T |
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| Q |
667 |
cttctca |
673 |
Q |
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| T |
16663121 |
cttctca |
16663115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 16663746 - 16663569
Alignment:
| Q |
27 |
gtaacacactagacatagttatgcaaatataacatgatacaaaaagtttaggagtccatgtgcaaactagcattatttaataggaaaaatgactatagtt |
126 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16663746 |
gtaacacactagacatagttatgcaaatataaaatgatacaaaaagtttaggagtccatgtgcaaactagcattatttaataggaaaaatgactatagtt |
16663647 |
T |
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| Q |
127 |
tataagtactaattaaaaggctccttattccaatgccatgcaagttatgaaatgatatagttttcctaaaataagcat |
204 |
Q |
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| T |
16663646 |
tttaagtactaattaaaaggctccttattccaatgccatgcaagttatgaaatgatatagttttcctaaaataagcat |
16663569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 281 - 309
Target Start/End: Complemental strand, 16663559 - 16663531
Alignment:
| Q |
281 |
aggttaactagagcagaccacaagagttt |
309 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
16663559 |
aggttaactagagcagaccacaagagttt |
16663531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 321 - 504
Target Start/End: Original strand, 30773924 - 30774107
Alignment:
| Q |
321 |
ctaatcacataaacttttaagccaatcaaataaaatcaaaattaactgaaaaggtaacaagagtgcccaaattatggttacagtcttttagcacaagatt |
420 |
Q |
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||||||| | |||||| || |||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||||||| |||||||||||||| || |
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| T |
30773924 |
ctaatcaaagaaacttgtataccaatcaaataaaatcaaaattaactgaaatggtaacatgagcgcccaagtcatggttacaatcttttagcacaaggtt |
30774023 |
T |
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| Q |
421 |
ggcatggtaatgttggtttacaagtcaaaagaagtaacaattttagataacataaccactgcaaattttgtccaaccttcaaaa |
504 |
Q |
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| T |
30774024 |
ggcataataatgttggtttacaagtcaggaacagtcacaatcttagataacatggtcacagcaaattttgtccaaccttcaaaa |
30774107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 671
Target Start/End: Complemental strand, 8586926 - 8586828
Alignment:
| Q |
573 |
aagaaaactagacattcttgattacaaggtgatccaacatactctcaagttccttcagataatcctcaagaacatctacttcattcccctggttcttct |
671 |
Q |
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||||||||||| || |||||| | ||||| |||||||| |||||||| |||||||||| |||| |||||||||||| |||||| ||||||| |||| |
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| T |
8586926 |
aagaaaactagccactcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattct |
8586828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 656
Target Start/End: Complemental strand, 27849336 - 27849288
Alignment:
| Q |
608 |
aacatactctcaagttccttcagataatcctcaagaacatctacttcat |
656 |
Q |
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| T |
27849336 |
aacatactttcaagatcctccaaatgatcctcaagaacatctacttcat |
27849288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 576 - 657
Target Start/End: Original strand, 15593986 - 15594067
Alignment:
| Q |
576 |
aaaactagacattcttgattacaaggtgatccaacatactctcaagttccttcagataatcctcaagaacatctacttcatt |
657 |
Q |
| |
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|||||||| || |||||| |||||||| || ||||| ||||| || ||||||| || | |||||||||||||||||||||| |
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| T |
15593986 |
aaaactagccagtcttgactacaaggttttcgaacatgctctcgagctccttcaaattaccctcaagaacatctacttcatt |
15594067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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