View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20432_low_3 (Length: 376)
Name: NF20432_low_3
Description: NF20432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20432_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 48885273 - 48884977
Alignment:
| Q |
16 |
attcgtcctacaaatacccttcccatttcccactcaacatttccaacccacattttgctaccaatgcaatctccgaatcagaatcgttgaatacatatcg |
115 |
Q |
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| T |
48885273 |
attcgtcctacaaatacccttcctatttcccactcaacatttccaacccacattttgctaccaatgcaatctccgaatcagaatcgttgaatacatatcg |
48885174 |
T |
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| Q |
116 |
aacggctcacatattaagtttatgcttaaactataattcaattatcctattgttttgagttctcactgcaacattctcctttttctctctttataatact |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48885173 |
aacggctcacatattaagtttatgcttaaactataattcaattatcctattgttttgagttctcactgcaacattctcctttttctccctttataatact |
48885074 |
T |
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| Q |
216 |
ctatctcaaatccaccttacaacaaggtagcgatggagaaaacagtgctcttgaagctactcacaattttagctcatttactatgttttgtttcctt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48885073 |
ctatctcaaatccaccttacaacaaggtagcgatggagaaaacagtgctcttgaagctactcacaattttagctcatttactatgttttgtttcctt |
48884977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 48884960 - 48884916
Alignment:
| Q |
332 |
gcagctacagtcaaactcattaatgcatccaagctgaagatgttt |
376 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
48884960 |
gcagctacagtcaaactcataaatgcatccaagctgaagatgttt |
48884916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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