View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_high_11 (Length: 395)
Name: NF20433_high_11
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 29 - 374
Target Start/End: Complemental strand, 44843739 - 44843387
Alignment:
| Q |
29 |
attaatagtaacattatcaaaaacaatcattaatagtaatgattaacagggagtactaaatatagtaagaagaagaaaacaaaaagaaannnnnnnagag |
128 |
Q |
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| T |
44843739 |
attaatagtaatattatcaaaaacaatcattaatagtaatgattaacagggagtactaaatatagtaagaagaagaaaacaaaaagaaatttttttagag |
44843640 |
T |
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| Q |
129 |
catgtagaggttattagcaattcttatt---gagatgtaaggcgtatacatgcatattgtctttctcataaatttgaatgatcccattgcatactttatt |
225 |
Q |
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| T |
44843639 |
catgtagaggttattagcaattcttattattgagatgtaaggcgtatacatgcatattgtctttctcataaatttgaatgatctcattgcatactttatt |
44843540 |
T |
|
| Q |
226 |
caacttctttcatcgcgtttcaaatnnnnnnntattaatgcttgaattcaatgtaaaatt-----tagagtgatttcttaagagtcgtatgattggagta |
320 |
Q |
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| T |
44843539 |
caacttctttcatcgcgtttcaaat-aaaaaatattaatgcttgaattcaatgtaaaatttagactagagtgatttcttaaaagtcgtatgattgaagta |
44843441 |
T |
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| Q |
321 |
aaagagtggtaattaagcattaaaattaaaaatgaagtgaataagtaatgtgta |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44843440 |
aaagagtggtaattaagcattaaaattaaaaatgaagtgaataagtaatgtgta |
44843387 |
T |
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