View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_high_12 (Length: 393)
Name: NF20433_high_12
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 14528612 - 14528238
Alignment:
| Q |
1 |
ttttttcccagtttagttctctgcccttgtttttatctgtaactatgcataagacatgttatatttagttcatattatgttaaactaataatcacttaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14528612 |
ttttttcccagtttagttctctgcccttgtttttatctgtaattatgcataagacactttatatttagttcatattatgttaaactaataatcacttaat |
14528513 |
T |
|
| Q |
101 |
agtcaaagtgaggcactagcttaaacaagcatgagttagttgtctaaattactgcatgagttcataaattaccaaaaatgaagcgatcaagacttctgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14528512 |
agtcaaagtgaggcactagcttaaacaagcatgagttagttgtctaagttactgcatgagttcataaattaccaaaaatgaagcgatcaagacttctgtt |
14528413 |
T |
|
| Q |
201 |
aggcataaattcatatacaagaaggctttcaggtcccgaacaactgcatcctaatagtctaactagattcttgtgttcgacaccgctaattatgtcgact |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14528412 |
aggcataaattcatatacaagaaggctttcgggtcctgaacaactgcatcctaatagtctaactagattcttgtgttcgacaccgctaattatgtcgact |
14528313 |
T |
|
| Q |
301 |
tcgttatagaaatctgctgctctatgtctgttgttgaaatataacctcttaatagcaatctctcttccatctggt |
375 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
14528312 |
tcgttagagaaatctgctgctctatgtctgttgttgaaaaataacctcttgatagcaatctctcttccatctggt |
14528238 |
T |
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