View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_high_13 (Length: 386)
Name: NF20433_high_13
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 69 - 371
Target Start/End: Complemental strand, 6490381 - 6490079
Alignment:
| Q |
69 |
cctgattcaatgttatgagttgcaagaacaactccaccaggaccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtat |
168 |
Q |
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| T |
6490381 |
cctgattcaatgttatgagttgcaagaacaactccaccaggaccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtat |
6490282 |
T |
|
| Q |
169 |
ccttaatagtgttatgaattggtgaagcatatcccaaatcagcagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattgg |
268 |
Q |
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| T |
6490281 |
ccttaatagtgttatgaattggtgaagcatatcccaaatcagcagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattgg |
6490182 |
T |
|
| Q |
269 |
tatccccattttctcagcagcctttgatgccaacaacattctctccttagcatctttcaaataagtttgaatggttccaaacacagtagggttttcacct |
368 |
Q |
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| T |
6490181 |
tatccccattttctcagcagcctttgatgccaacaacattctctccttagcgtctttcaaataagtttgaatggttccaaacacagtagggttttcacct |
6490082 |
T |
|
| Q |
369 |
ttg |
371 |
Q |
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||| |
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| T |
6490081 |
ttg |
6490079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 111 - 358
Target Start/End: Original strand, 6348351 - 6348598
Alignment:
| Q |
111 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
210 |
Q |
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| T |
6348351 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatctttaatagtatcatgaattggtgacttagacccaaaagatt |
6348450 |
T |
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| Q |
211 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttgatgccaacaacattct |
310 |
Q |
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| T |
6348451 |
cagccaatgtactttctgttgacatataagcacctctaaccaatttaaatcccataggaattccaattttttcagcagcttttgttgcaagaaacaatct |
6348550 |
T |
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| Q |
311 |
ctccttagcatctttcaaataagtttgaatggttccaaacacagtagg |
358 |
Q |
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| T |
6348551 |
ctccttagcatctttcaaataagtttgaattgttccaaacacaatagg |
6348598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 111 - 370
Target Start/End: Original strand, 6333071 - 6333330
Alignment:
| Q |
111 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
210 |
Q |
| |
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| T |
6333071 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagatt |
6333170 |
T |
|
| Q |
211 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttgatgccaacaacattct |
310 |
Q |
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| T |
6333171 |
cagccaatgtactttctgtggacatataagcacctctaaccaatttaaatcccataggaattccaatttcttcagcagcttttgttgcaagaaacaatct |
6333270 |
T |
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| Q |
311 |
ctccttagcatctttcaaataagtttgaatggttccaaacacagtagggttttcaccttt |
370 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| |||| |
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| T |
6333271 |
ctccttagcatctttcaaataagtttgaattgttccaaacacaatagggttatcatcttt |
6333330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 111 - 358
Target Start/End: Original strand, 6326115 - 6326362
Alignment:
| Q |
111 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
210 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||| | |||||| | |||||||||||| | | || ||| |
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| T |
6326115 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagatt |
6326214 |
T |
|
| Q |
211 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttgatgccaacaacattct |
310 |
Q |
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|||||||| | ||||| | ||||||||||||||||||||||| ||||||||||| || || || |||| |||||||| |||| ||| | |||| ||| |
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| T |
6326215 |
cagccaatgtactttctgtggacatataagcacctctaaccaatttaaatcccataggaattccaatttcttcagcagcttttgttgcaagaaacaatct |
6326314 |
T |
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| Q |
311 |
ctccttagcatctttcaaataagtttgaatggttccaaacacagtagg |
358 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
6326315 |
ctccttagcatctttcaaataagtttgaattgttccaaacacaatagg |
6326362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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