View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_high_15 (Length: 361)
Name: NF20433_high_15
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 31 - 344
Target Start/End: Original strand, 29737558 - 29737871
Alignment:
| Q |
31 |
catcaattgtatccttctatattgcactctttcattcatcccataatttttctttgacaaatattcatttatcccatgatatcagnnnnnnnaaaaagga |
130 |
Q |
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| T |
29737558 |
catcaattgtatccttctatattgcattctttcattcatcccataatttttctttgacaaatattcatttatcccataatatcagtttttttaaaaagga |
29737657 |
T |
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| Q |
131 |
ctattaataataatttaaggcattttcttcttcaaacaaaaaataatttaaggcattttcatgaattaaaaaataaagtagaatgaacagttttaacatc |
230 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29737658 |
ctattaataataatttaaagcattttcttcttcaatcaaaaaataatttaaggcattttcatgaattaaaaaataaagtagaatgaatagttttaacatc |
29737757 |
T |
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| Q |
231 |
ttttataaaagaaaaatatctattcttatcaagtataatattatcgtgaatatattgggggaattagaatatagtgatgcagacaatgttaacattaaat |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29737758 |
ttttataaaagaaaaatatctattcttatcaagtataatattatcgtgaatatattgggggaattagaatatagtgatgcagacaatgttaacattaaat |
29737857 |
T |
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| Q |
331 |
gaacatcttttaag |
344 |
Q |
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|||||||||||||| |
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| T |
29737858 |
gaacatcttttaag |
29737871 |
T |
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