View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_high_23 (Length: 259)
Name: NF20433_high_23
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8720033 - 8720287
Alignment:
| Q |
1 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttaagacttgtgatggcaactttgctgcaaggttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
8720033 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttaagacatgtgatggcaactttgcagcaaggttta |
8720132 |
T |
|
| Q |
101 |
gaattccagattgaggatcgcaatactcttgaaatggcaaacaacggataaactcatcacaatggcgcggcaagacattttcaaactcatcataaggtgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
8720133 |
gaattccagattgaggatcgcaatactcttgaaatggcaaacaacggataaactcatcacaatggcgtggcaagacattttcaaactcatcataaggggg |
8720232 |
T |
|
| Q |
201 |
ccagtcttttagcttgagcatctccggccagaaatttatatatcttcttctctct |
255 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8720233 |
ccaatcttttagcttgagcatctccggccagaaatttatatatcttcttccctct |
8720287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 8674990 - 8675244
Alignment:
| Q |
1 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttaagacttgtgatggcaactttgctgcaaggttta |
100 |
Q |
| |
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|||||||||||||| || ||| |||||||||||||||||||| |||||||||||||||| |||||| ||| | || |||||||||||| |||||||| | |
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| T |
8674990 |
tctcctctgccaaggtcatctttggttccataagcaatgtaacattttggacctaagtcaagctttatgacatttggtggcaactttgcagcaaggttga |
8675089 |
T |
|
| Q |
101 |
gaattccagattgaggatcgcaatactcttgaaatggcaaacaacggataaactcatcacaatggcgcggcaagacattttcaaactcatcataaggtgg |
200 |
Q |
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| T |
8675090 |
gaattccagatcgaggatcgcaatactcttgaaatggcaaacaacggataaactcgtcacaatggcgcggcaggacattttcaaactcatcataaggtgg |
8675189 |
T |
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| Q |
201 |
ccagtcttttagcttgagcatctccggccagaaatttatatatcttcttctctct |
255 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
8675190 |
ccagtattttagcttgagcatctctggccagaaatttatatatcttcttccctct |
8675244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 8592180 - 8592427
Alignment:
| Q |
1 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttaagacttgtgatggcaactttgctgcaaggttta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||| | |
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| T |
8592180 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttatgacatgtggtggcaactttgtagcaaggttga |
8592279 |
T |
|
| Q |
101 |
gaattccagattgaggatcgcaatactcttgaaatggcaaacaacggataaactcatcacaatggcgcggcaagacattttcaaactcatcataaggtgg |
200 |
Q |
| |
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||||||| ||| ||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
8592280 |
gaattcctgatcgaggatcgctatactcttgaaatggcagacaatggataaactcgtcacaatggcgcggcaagagattttcaaactcatcagaaggtgg |
8592379 |
T |
|
| Q |
201 |
ccagtcttttagcttgagcatctccggccagaaatttatatatcttct |
248 |
Q |
| |
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|||||||||||||||||||||||| ||||| ||||||| ||||||||| |
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| T |
8592380 |
ccagtcttttagcttgagcatctctggccataaatttacatatcttct |
8592427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 23437507 - 23437253
Alignment:
| Q |
1 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttaagacttgtgatggcaactttgctgcaaggttta |
100 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||| ||| | || ||||||||||| |||||||| | |
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| T |
23437507 |
tctcctctgccaagctcatctttggttccataagcaatgtaagattttggacctaagtcaagctttatgacgtttggtggcaactttgtagcaaggttga |
23437408 |
T |
|
| Q |
101 |
gaattccagattgaggatcgcaatactcttgaaatggcaaacaacggataaactcatcacaatggcgcggcaagacattttcaaactcatcataaggtgg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23437407 |
gaattccagatcgaggatcgcaatactcttgaaatggcaaacaatgaataaactcgtcacaatggcgcggcaagacattttcaaactcatcataaggtgg |
23437308 |
T |
|
| Q |
201 |
ccagtcttttagcttgagcatctccggccagaaatttatatatcttcttctctct |
255 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
23437307 |
ccagtcttttagcctgagcatctctggccagaaatttatatatcttcttccctct |
23437253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 55411337 - 55411591
Alignment:
| Q |
1 |
tctcctctgccaagctcttctctggttccataagcaatgtaagtttttggacctaagtcaggctttaagacttgtgatggcaactttgctgcaaggttta |
100 |
Q |
| |
|
||||| |||||||| |||||||| | ||||||||||| || ||||||||||| | ||||| |||| || || | |||||||||| | || || || | |
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| T |
55411337 |
tctcccctgccaagttcttctctaatcccataagcaatatatgtttttggacccatatcaggttttagaacatgggctggcaactttacagccagattga |
55411436 |
T |
|
| Q |
101 |
gaattccagattgaggatcgcaatactcttgaaatggcaaacaacggataaactcatcacaatggcgcggcaagacattttcaaactcatcataaggtgg |
200 |
Q |
| |
|
|| |||||| ||||||| ||||| |||||||||||| |||| ||||| || |||||||| || ||||| | || |||||| | |||| |||| || |
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| T |
55411437 |
gagttccagcccgaggatcagtatactgttgaaatggcaagaaacgaataaattcttcacaatgacggggcaaaagatcttcaaatttatcagaaggggg |
55411536 |
T |
|
| Q |
201 |
ccagtcttttagcttgagcatctccggccagaaatttatatatcttcttctctct |
255 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||| |||| |||||| |||| |
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|
| T |
55411537 |
ccagtcttttagcttcagcatctctggccagagatttccatatgttcttccctct |
55411591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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