View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20433_high_3 (Length: 694)

Name: NF20433_high_3
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20433_high_3
NF20433_high_3
[»] chr1 (1 HSPs)
chr1 (55-689)||(9969152-9969783)


Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 55 - 689
Target Start/End: Original strand, 9969152 - 9969783
Alignment:
Q  55 ctgtggacttgtcatattatcgagaaaattccccggcgtgttgatggagaagatgtcggcgttggagagattggagagtcttgtaggagtaaagctttta 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9969152 ctgtggacttgtcatattatcgagaaaattccccggcgtgttgatggagaagatgtcggcgttggagagattggagagtcttgtaggagtaaagctttta 9969251  T
Q  155 cccaatgaggaagttgattctggtggtgctgaggaaatggagcgtcggattcggactttgattctgccattttcgtcggtttctgattgcgttgtgagcg 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9969252 cccaatgaggaagttgattctggtggtgctgaggaaatggagcgtcggattcggactttgattctgccattttcgtcggtttctgattgcgttgtgagcg 9969351  T
Q  255 ttgcgtcgtggctgtagagggaaattacgtcgtcgtcgagggagatttttgttatggaggctgctgttgttcctggaaactggcttttgattaagagttt 354  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9969352 gtgcgtcgtggctgtagagggaaattacgtcgtcgtcgagggagatttttgttatggaggctgctgttgttcctggaaactggcttttgattaagagttt 9969451  T
Q  355 ggctgctctgtattctagtaggaatagaagcagagtatacctgaacacaaaattaattatttaataaaaagtgaaaatataatattgaaacnnnnnnngt 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |  |   |||        ||    
T  9969452 ggctgctctgtattctagtaggaatagaagcagagtatacctgaacacaaaattaattagttaataaaaagtgaaaattga--aacaaaaaaagtgaagt 9969549  T
Q  455 gttatattacaatcaacttactaatttacgtcttagggtatatgttaagtgacctaaacaaaagaaattgtgttcgaaaataaatagtttttaaactttt 554  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9969550 gttatattacaatcaacttactaatttacgt-ttagggtatatgttaagtaacctaaacaaaagaaattgtgttcgaaaataaatagtttttaaactttt 9969648  T
Q  555 gaaaaattcaatgcacaaagaatttaagagaatatttctatctcggggttataagagtgttggggtcgcagactcgaaccctgaaatgctcctcttttcc 654  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  9969649 gaaaaattcaatgcacaaagaatttaagagaatatttctatctcggggttattagagtgttggggtcgcagactcgaaccctgaaatgttcctcttttcc 9969748  T
Q  655 tcatcgagttcgctgccgctagactcttttaaaaa 689  Q
    |||||||||||||| ||||||||||||||||||||    
T  9969749 tcatcgagttcgcttccgctagactcttttaaaaa 9969783  T

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