View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_high_6 (Length: 488)
Name: NF20433_high_6
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 10 - 471
Target Start/End: Complemental strand, 17143900 - 17143439
Alignment:
| Q |
10 |
attatacttccaaaaaaccagcgtcttatatgtttaggaatgatttagaagttcataaataatattagtctgaaaaagttgtagtagaacctaactgata |
109 |
Q |
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| T |
17143900 |
attacacttccaaaaaaccagcgtcttatatgtttaggaatgatttagaagttcataaataatattagtctgaaaaagttgtagtagaacctaactgata |
17143801 |
T |
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| Q |
110 |
tggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagacagt |
209 |
Q |
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| T |
17143800 |
tggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagacagt |
17143701 |
T |
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| Q |
210 |
gaagatatggaagatagcatttccagtggctttgtgttcactgtttcagttcctcacaaactcttcaacttcagtctatgctggtcatcttggagacgtt |
309 |
Q |
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| T |
17143700 |
gaagatatggaagatagcacttccagtggccttgtgttcactgtttcagttcctcacaaactcttcaacttcagtctatgctggtcatcttggagacgtt |
17143601 |
T |
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| Q |
310 |
gagctttcttctttctctctttttcaaagtatcatcaactgcatctattccttgctggttagtttgtatctttcttatcactctcattaatccaaagttt |
409 |
Q |
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| T |
17143600 |
gagctttcttctttctctctttttcaaagtatcatcaactgcatctattccttgctggttagtttctatctttcttatcactctcattaatccaaagttt |
17143501 |
T |
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| Q |
410 |
tgtattatgtttatgtgggagctctaaagcatgggtacctataaaaaggtgaagtacctgta |
471 |
Q |
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| T |
17143500 |
tgtattatgtttatgtgggagctctaaagcatgggtacctataaaaaggtgaagtacctgta |
17143439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 107 - 405
Target Start/End: Complemental strand, 17155974 - 17155676
Alignment:
| Q |
107 |
atatggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagac |
206 |
Q |
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| T |
17155974 |
atatggaaacaccattgctgaccaaaagatttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgttttgtggagtgagac |
17155875 |
T |
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| Q |
207 |
agtgaagatatggaagatagcatttccagtggctttgtgttcactgtttcagttcctcacaaactcttcaacttcagtctatgctggtcatcttggagac |
306 |
Q |
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| T |
17155874 |
agtgaagatatggaagatagcacttccagtggctttgtgttatttgtttcaatacctcacaaacacttcaacttccatctatgctggtcatcttggagat |
17155775 |
T |
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| Q |
307 |
gttgagctttcttctttctctctttttcaaagtatcatcaactgcatctattccttgctggttagtttgtatctttcttatcactctcattaatccaaa |
405 |
Q |
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| T |
17155774 |
attgaactctcttctttctctctttttcaaagtgtcctcaattgcatctattctttgctggttagtttgtactttcctcatcactcttattcatccaaa |
17155676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 92 - 258
Target Start/End: Complemental strand, 17170484 - 17170318
Alignment:
| Q |
92 |
agtagaacctaactgatatggaaacaccattgttaatcaaaagctttacttcagaaaatgattacttggcagtgaaaagtttgaaggatgttaaacatgt |
191 |
Q |
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||||||| || ||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||| ||||| ||||| ||| |||| |
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| T |
17170484 |
agtagaaactcactcatatggaaacaccattgttgattaaaagctttacttcagaaaatgattacttacctttgaaaaacttgaaagatgtgaaatatgt |
17170385 |
T |
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| Q |
192 |
tttgtggagtgagacagtgaagatatggaagatagcatttccagtggctttgtgttcactgtttcag |
258 |
Q |
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| T |
17170384 |
tttgtggaatgagacattgaagatatggaagatagcaattccagtggctttgtctttactttttcag |
17170318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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