View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_11 (Length: 407)
Name: NF20433_low_11
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 2 - 172
Target Start/End: Complemental strand, 8387882 - 8387712
Alignment:
| Q |
2 |
caacaaacaaggtgattggaccttgctcatagaattgattgatatgtgaggaagatttgtttgtggctttctggttttgctatttggaaacggtattata |
101 |
Q |
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| T |
8387882 |
caacaaacaaggtgattagaccttgcttatggaattgattgatatgtgaggaagattttcttatggctttatggttttgctatttggagaaggtattcta |
8387783 |
T |
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| Q |
102 |
cgattatattgatggttttctattttggagttcttaacatgttatgaagaatacgagactccattccaatg |
172 |
Q |
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| T |
8387782 |
tgattacatcgatggttttctattttggagttcttcacatgtaatgaagaatacaagactgcaatccaatg |
8387712 |
T |
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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 285 - 389
Target Start/End: Complemental strand, 35267940 - 35267833
Alignment:
| Q |
285 |
ttgtgctgctgtcaagtggttaaacttgacatatagtttttacttggtggttaagcgttgtgccttatttg---atgttgatgattgcttctactggatg |
381 |
Q |
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| T |
35267940 |
ttgtgcttctgccaagtggttaaacttgacatacagtttctgcttggtggttaagtgttgtgccttaattggcattgttgatgattgcttctgccggatg |
35267841 |
T |
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| Q |
382 |
atggttaa |
389 |
Q |
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| T |
35267840 |
gtggttaa |
35267833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 18704194 - 18704138
Alignment:
| Q |
33 |
gaattgattgatatgtgaggaagatttgtttgtggctttctggttttgctatttgga |
89 |
Q |
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| T |
18704194 |
gaattgattgacatatgagaaagatttgtttgtggctttctggttttgctatttgga |
18704138 |
T |
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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 281 - 345
Target Start/End: Complemental strand, 219499 - 219435
Alignment:
| Q |
281 |
gttgttgtgctgctgtcaagtggttaaacttgacatatagtttttacttggtggttaagcgttgt |
345 |
Q |
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| T |
219499 |
gttgttgtgcttctgccaagtggttaaactggtcatatagtttctacttggtggttaagcgttgt |
219435 |
T |
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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 351
Target Start/End: Complemental strand, 36316702 - 36316631
Alignment:
| Q |
280 |
tgttgttgtgctgctgtcaagtggttaaacttgacatatagtttttacttggtggttaagcgttgtgcctta |
351 |
Q |
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| T |
36316702 |
tgttattgtgcttctgctaagtggttaaactttacatatagtttctgcttggtggttaagcgttgtgcctta |
36316631 |
T |
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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Original strand, 17823204 - 17823273
Alignment:
| Q |
282 |
ttgttgtgctgctgtcaagtggttaaacttgacatatagtttttacttggtggttaagcgttgtgcctta |
351 |
Q |
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| T |
17823204 |
ttgtcgtgcttctgccaagtggtaaaactcgacatatagtttctgcttggtggttaagcgttgtgcctta |
17823273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 17823109 - 17823179
Alignment:
| Q |
221 |
tttgatgatgattagccttattggcttgttgtgagcttctgtccataatcgttaagccttgttgttgtgct |
291 |
Q |
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| T |
17823109 |
tttgatgatgattagctttattgacttgttatgagcttctgttgatgatggttaagtcttgttgttgtgct |
17823179 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 3786841 - 3786776
Alignment:
| Q |
213 |
tttgttgatttgatgatgattagccttattggc-ttgttgtgagcttctgtccataatcgttaagc |
277 |
Q |
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| T |
3786841 |
tttgctgatttggtgatgattagccttattggctttgtggtgagcttctgtctatgatggttaagc |
3786776 |
T |
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