View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_15 (Length: 366)
Name: NF20433_low_15
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 15 - 350
Target Start/End: Complemental strand, 5299922 - 5299587
Alignment:
| Q |
15 |
caaaggatgcggctaaactttgatatgtcatttggaaatgtagttatcacttggtatgtgcaactatcaatacattgatacaaatgattgtttccttttg |
114 |
Q |
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| T |
5299922 |
caaaggatgtggctaaactttgatatgtcatttggaaatgtagttatcacttggtatgtgcaactatcaatacattgatacaaatgattgtttccttttg |
5299823 |
T |
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| Q |
115 |
ttgatttgtagagcaaggaaaagagtataatagaggtgtcacaaattagttgaaattattgtctattttcaccccacatgattcctccgtcgatataatt |
214 |
Q |
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| T |
5299822 |
ttgatttgtagagcaaggaaaagagtataatagaggtgtcacaaattagttgaaattattgtctattttcaccccacatgattcctccgtcaatataatt |
5299723 |
T |
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| Q |
215 |
ttgttcgagatacagtagaggtgtcacatgtcccttaacttgtgtgatttgtaatgaggcaatttagaacagctaccaccttttcttccattgtttgaca |
314 |
Q |
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| T |
5299722 |
ttgttcgagatacagtagaggtgtcacatgtcccttaacttgtatgatttgtaatgaggcaatttagaacagctaccaccttttcttccattgtttgaca |
5299623 |
T |
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| Q |
315 |
gcggctaacgtatggcacgcaagtggagtttggagc |
350 |
Q |
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| T |
5299622 |
gcggctaacgtatggcgcgcaagtggagtttggagc |
5299587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 20667355 - 20667404
Alignment:
| Q |
96 |
aaatgattgtttccttttgttgatttgtagagcaaggaaaagagtataata |
146 |
Q |
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| T |
20667355 |
aaatgattgtttccttc-gctgatttgtagagcaaggaaatgagtataata |
20667404 |
T |
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