View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_19 (Length: 323)
Name: NF20433_low_19
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 32505092 - 32504789
Alignment:
| Q |
1 |
ctaattaagggctatgtttatgcatggttttgagctctgcttgtatttgattatttgaacccaccctacaacatctcactttaatgtgatagtacccgat |
100 |
Q |
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| T |
32505092 |
ctaattaagtgctattgttatgcatggttttgatctct---tgtatttgattatttgaacccaccctacaacatcacactttaatgtgatagtacccgat |
32504996 |
T |
|
| Q |
101 |
tttggtggattttcgcacatgtccaatacatttcttgtacactgattggatctgtataaactaagtggactcaattcgtccatgcatattatatgaccga |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504995 |
tttagtggattttcgcacatgtccaatacatttcttgtacactgattggatctgtataaactaagtggactcaattcgtccatgcatattatatgaccga |
32504896 |
T |
|
| Q |
201 |
aggagcaacaagtaaataataataatttagcatcaagtcatcaaccaccttattgattaatttgattccgtccaaaaaacaaatttaattgcttttgcat |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32504895 |
aggagcaacaagtaaataa---taatttagcatcaagtcatcaaccaccttattgattaatttgattccgtccaaaaaacaaatttaattgcttttgcat |
32504799 |
T |
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| Q |
301 |
gtgaaaattg |
310 |
Q |
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|||||||||| |
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| T |
32504798 |
gtgaaaattg |
32504789 |
T |
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