View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_2 (Length: 734)
Name: NF20433_low_2
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 410 - 734
Target Start/End: Original strand, 675152 - 675478
Alignment:
| Q |
410 |
aaaatcaatcttttcaacaaccctttgagtttctctcactaaaaatccaatcttttcacaaatttctcaaaccccattttgattctctttgattctgata |
509 |
Q |
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| T |
675152 |
aaaatcaatcttttcaacaaccctttgagtttctctcactaaaaatccaatcttttcacaaatttctcaaaccccattttgattctctttgattctgata |
675251 |
T |
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| Q |
510 |
cacccacaagaaaaagattcaatttttatcacaaatttacttggataaaaaatggg-ttttcgaagaattcgaagaaaacacaaatagagaagagtttgg |
608 |
Q |
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| T |
675252 |
cacccacaagaaaaagattcaatttttatcacaaatttacttggataaaaaatgggtttttcgaagaattcgaagaaaacacaaatagagaagagtttgg |
675351 |
T |
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| Q |
609 |
aatctgaagctaagaaatgggtaattgctggaatttctctcaggtcattgaaacctataaacacaaagatgagcac-aaaaacggcgcagtttttgacga |
707 |
Q |
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| T |
675352 |
aatctgaagctaagaaatgggtaattgctggaatttctctcaggtcattgaagcccataaacacaaagatgagcacaaaaaacggcgcagtttttgacga |
675451 |
T |
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| Q |
708 |
agaagatgaagaaaattcaacaacacc |
734 |
Q |
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| T |
675452 |
agaagatgaagaaaattcaacaacacc |
675478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 674744 - 674928
Alignment:
| Q |
15 |
gcacagactctgtcatcatcattatttcattcaataatctnnnnnnntccaaggataaaatcgtaattcttcatctcaaaattcatagagcgggagttag |
114 |
Q |
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| T |
674744 |
gcacagactctgtcatcatcattatttcattcaataatataaaaaaatccaaggttaaaatcgtaattcttcatctcaaaattcatagagcgggaattag |
674843 |
T |
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| Q |
115 |
agccgttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcagcccct |
199 |
Q |
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| T |
674844 |
agccgttgcttctcaattcaatgaaattttcgcgccaaattttcatttcccacttgccctgcccgtaaattctcggtcagaccct |
674928 |
T |
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