View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20433_low_20 (Length: 311)
Name: NF20433_low_20
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_20 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 30670116 - 30669836
Alignment:
| Q |
16 |
tagagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatgaaata |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||| ||||||||||| | |
|
|
| T |
30670116 |
tagagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagtgattttgtcgaaatgaaagcttttcgagtgatgaaaga |
30670017 |
T |
|
| Q |
116 |
tttcctagggaagatggaatattaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttccaa |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30670016 |
tttcctagggaagatggaatagtaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttccaa |
30669917 |
T |
|
| Q |
216 |
tgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30669916 |
tgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
30669836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 30661439 - 30661156
Alignment:
| Q |
13 |
acttagagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatgaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||| |
|
|
| T |
30661439 |
acttagagacagccatgtcaaaactgacaacctgcccaaagaatatggtatgcttccttccaagtgattttgtagaaatgaaagcttttcgagtgatgaa |
30661340 |
T |
|
| Q |
113 |
atatttcctagggaagatggaatattaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttc |
212 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30661339 |
agatttcctagggaagatggaatagtaccaactagattattgtgaccaagagacaactcagtaagttgcatcattgatccaaagtatgcaggaactcttc |
30661240 |
T |
|
| Q |
213 |
caatgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30661239 |
caatgagtttattcaaagctaacctaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
30661156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 30633711 - 30633427
Alignment:
| Q |
12 |
cacttagagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||||||| |
|
|
| T |
30633711 |
cacttagagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaattgattttgaagaaatgaaagcttttcgagtgatga |
30633612 |
T |
|
| Q |
112 |
aatatttcctagggaagatggaatattaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactctt |
211 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30633611 |
aagatttcctatggaagatggaatagtaccaactagattattgtgaccaagagacaactcagtaagttgcatcattgatccaaagtatgcaggaactctt |
30633512 |
T |
|
| Q |
212 |
ccaatgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30633511 |
ccaatgagtttattcaaagctaacctaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
30633427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 30631380 - 30631322
Alignment:
| Q |
238 |
aattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30631380 |
aattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
30631322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 10411740 - 10412012
Alignment:
| Q |
13 |
acttagagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatgaa |
112 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
10411740 |
acttagagacagccatgtcaaacctgacaacctacccaaagaataaggtatgctttcttccaagtgattttgttgaaatgaaagcattttgagtgatgaa |
10411839 |
T |
|
| Q |
113 |
atatttcctagggaagatggaatattaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttc |
212 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||||| || |||| ||||| |||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
10411840 |
agatttcctagggaagatggaatagtaccaactagattattgtaactaagaaacaactcagtaagttgcatcatttacccaaagcatgcaggaattcttc |
10411939 |
T |
|
| Q |
213 |
caatgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctcc |
285 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10411940 |
caatgagttgattgaaagctaaacaaattaccttgatatttgtgcagttagcgagctctatgggaatctctcc |
10412012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 293
Target Start/End: Original strand, 10417474 - 10417743
Alignment:
| Q |
27 |
atgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatgaaatatttcctaggga |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| || ||| ||| ||| |||||||||| |||||| | || |
|
|
| T |
10417474 |
atgtcaagcctgacaacctacccaaagaataaggtatgcttccttccaagtgattttctgtaaaatctagtgtttgtagtgatgaaacatttcccaaggt |
10417573 |
T |
|
| Q |
127 |
agatggaatattaccaactagattattgtgacca-agagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttccaatga---gttt |
222 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||| ||| |||||||||||||||||| ||||| ||| |||| |||||| ||| ||| |
|
|
| T |
10417574 |
agatggaatggtaccaactagattatt-tgacttgagaatcaatgtagtaagttgcatcattgatccaaaccatgtgggaattcttcctgtgatcagttg |
10417672 |
T |
|
| Q |
223 |
attgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagat |
293 |
Q |
| |
|
||| || | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10417673 |
attcaatgcaaaatcaattacctcaatatttgtgcaattagtgagctctatgggaatctctccttgaagat |
10417743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 296
Target Start/End: Original strand, 10421403 - 10421662
Alignment:
| Q |
37 |
tgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatgaaatatttcctagggaagatggaata |
136 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||| ||||||||| || ||| || || ||||||||| ||| |||||||||||||| ||| |
|
|
| T |
10421403 |
tgacaacttacccaaagaatcaggtatgcttccttccaagtgattttgtgtaagtgatagccattgaagtgatgaagcattacctagggaagatgggata |
10421502 |
T |
|
| Q |
137 |
ttaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttccaatgagtttattgaaaggtaaat |
236 |
Q |
| |
|
||||||||||||||||| || || ||| | |||||||||||||||||||||| || |||| |||||||||||||| |||||| | || |
|
|
| T |
10421503 |
gtaccaactagattattggcactgagtttcaattcaataagttgcatcattgacccaaaccttgttggaattcttccaatgagttgattgaagcccagat |
10421602 |
T |
|
| Q |
237 |
caattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||||| || ||||||||||||||||| |||| |
|
|
| T |
10421603 |
taattactttgatatttatgcaattactgagctccataggaatctctccttgaagtttgt |
10421662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 293
Target Start/End: Complemental strand, 35404997 - 35404718
Alignment:
| Q |
17 |
agagacagccatgtcaaaactgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttgagtgatgaaatat |
116 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||| || || || || | || ||||||||||| || |
|
|
| T |
35404997 |
agagacagatatgtcaaacttgacaacctacccaaagaataaggtatgcttccttcaaagtgattttctggaagtgctagcaattggagtgatgaaaaat |
35404898 |
T |
|
| Q |
117 |
ttcctagggaagatggaatattaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttcc--- |
213 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |||| |||| ||| | | |||| |||||||||||||||||| ||||| ||| ||||||||||| |
|
|
| T |
35404897 |
ttgctagggaagatggaatagtaccaaccagatcattggcacctaaatacaatttagtaagttgcatcattgatccaaaccatgtgggaactcttccggt |
35404798 |
T |
|
| Q |
214 |
aatgagtttattgaaaggtaaatcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagat |
293 |
Q |
| |
|
|| ||| ||||| | |||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
35404797 |
gatcagtccattgagtgcaaaattaattaccttgatatttgagcaattagagagctctatgggaatctctccttgaagat |
35404718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 35365256 - 35365002
Alignment:
| Q |
37 |
tgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttg-agtgatgaaatatttcctagggaagatggaat |
135 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| | ||||||||| || ||| | ||||||| |||||||||| |||||||||||| ||||| || |
|
|
| T |
35365256 |
tgacaacttacccaaagaatcaggtatgcttccttccaggtgattttgtgtaagtgata-tattttggagtgatgaaacatttcctagggaggatgggat |
35365158 |
T |
|
| Q |
136 |
attaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttccaatgagtttattgaaaggtaaa |
235 |
Q |
| |
|
| ||||||||||||||||| || || ||| | | | |||||||||||||||||||| || |||| |||||||||||||| |||||| | | |
|
|
| T |
35365157 |
agtaccaactagattattgccacggagtttcaatcgaatgagttgcatcattgacccaaaccttgtcggaattcttccaatgagttgattgaagcccaga |
35365058 |
T |
|
| Q |
236 |
tcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaag |
291 |
Q |
| |
|
| |||||| |||||||||| ||| ||||||||||| || ||||||||||||||||| |
|
|
| T |
35365057 |
ttaattactttgatatttgagcaattagtgagctccataggaatctctccttgaag |
35365002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 35374799 - 35374641
Alignment:
| Q |
37 |
tgacaacctacccaaagaatatggtatgcttccttccaagcgattttgtgaaaatgaaagtattttg-agtgatgaaatatttcctagggaagatggaat |
135 |
Q |
| |
|
||||||| ||||||||||| | ||||| ||||||| |||| |||||||| || ||| | ||||||| |||||||||| |||||| | ||| |||||||| |
|
|
| T |
35374799 |
tgacaacatacccaaagaacaaggtattcttcctttcaagtgattttgtccaagtgata-tattttggagtgatgaaacatttcccatggatgatggaat |
35374701 |
T |
|
| Q |
136 |
attaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaa |
195 |
Q |
| |
|
| ||||||||||||||||| | | ||| || |||||||||||||||||||||||| |
|
|
| T |
35374700 |
agtaccaactagattattggcaacgagattcagttgagtaagttgcatcattgacccaaa |
35374641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 279
Target Start/End: Complemental strand, 35385089 - 35385043
Alignment:
| Q |
233 |
aaatcaattaccttgatatttgtgcagttagtgagctctatgggaat |
279 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||| |||||| ||||| |
|
|
| T |
35385089 |
aaatgaattacctggatatttgtgcagttagtgatctctataggaat |
35385043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 296
Target Start/End: Complemental strand, 13563758 - 13563497
Alignment:
| Q |
37 |
tgacaacctacccaaagaatatggtatgcttccttccaa--gcgattttgtgaaaatgaaagtattttgagtgatgaaatatttcctagggaagatggaa |
134 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| | |||| | || ||||| | || ||| || |||||||| || | ||||| ||| | |
|
|
| T |
13563758 |
tgacaacctacccaaagaataaggtatgcttccttccaaaagtgattatatgcaaatgttatgtgttggagagacgaaatattccccaaggaaggtggga |
13563659 |
T |
|
| Q |
135 |
tattaccaactagattattgtgaccaagagacaaccaagtaagttgcatcattgacccaaagtatgcaggaactcttccaatgagtttattgaaaggtaa |
234 |
Q |
| |
|
|| || |||||||||||||| | ||||| |||| |||||| |||||||||||| |||| | |||||||||||| |||||| |||| | |
|
|
| T |
13563658 |
tagtatcaactagattattgccatcaagaagcaacatagtaagctgcatcattgactcaaaccacatgggaactcttccagtgagttgattgctccacat |
13563559 |
T |
|
| Q |
235 |
atcaattaccttgatatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| ||||||||| |||||||||||||||| ||||| |
|
|
| T |
13563558 |
atcaattatcttgatattagtgcaattagcgagctctatcggaatctctccttgaatattgt |
13563497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 29625129 - 29625177
Alignment:
| Q |
248 |
atatttgtgcagttagtgagctctatgggaatctctccttgaagattgt |
296 |
Q |
| |
|
|||||||||||||| ||||||||| | ||||||||||||||||| |||| |
|
|
| T |
29625129 |
atatttgtgcagtttgtgagctctgtaggaatctctccttgaagtttgt |
29625177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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