View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20433_low_23 (Length: 266)

Name: NF20433_low_23
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20433_low_23
NF20433_low_23
[»] chr3 (6 HSPs)
chr3 (1-266)||(9454836-9455101)
chr3 (1-147)||(53208429-53208575)
chr3 (3-147)||(7323058-7323202)
chr3 (2-145)||(32130377-32130520)
chr3 (1-147)||(7227292-7227438)
chr3 (1-150)||(50064084-50064233)
[»] chr6 (6 HSPs)
chr6 (1-148)||(13425441-13425588)
chr6 (2-137)||(23889796-23889931)
chr6 (1-137)||(18133656-18133792)
chr6 (32-147)||(25100779-25100895)
chr6 (63-150)||(10875612-10875699)
chr6 (40-121)||(6539314-6539395)
[»] chr4 (10 HSPs)
chr4 (1-145)||(2588236-2588380)
chr4 (1-147)||(16497453-16497599)
chr4 (2-145)||(5650486-5650629)
chr4 (1-147)||(49577305-49577451)
chr4 (1-150)||(4289819-4289968)
chr4 (1-147)||(39598852-39598998)
chr4 (1-77)||(16497714-16497790)
chr4 (1-79)||(52249337-52249415)
chr4 (32-147)||(55911385-55911500)
chr4 (63-147)||(14066498-14066582)
[»] chr2 (12 HSPs)
chr2 (2-146)||(44673382-44673526)
chr2 (1-147)||(25438509-25438655)
chr2 (1-147)||(36536125-36536271)
chr2 (2-147)||(37154589-37154727)
chr2 (63-147)||(33391758-33391842)
chr2 (2-139)||(41714894-41715031)
chr2 (3-94)||(42975653-42975744)
chr2 (91-145)||(26377615-26377669)
chr2 (37-121)||(950515-950599)
chr2 (28-75)||(40712598-40712645)
chr2 (63-149)||(21005772-21005858)
chr2 (63-147)||(39573912-39573996)
[»] chr5 (8 HSPs)
chr5 (1-147)||(7992131-7992277)
chr5 (26-145)||(28276949-28277068)
chr5 (2-135)||(10916858-10916991)
chr5 (2-126)||(5240662-5240786)
chr5 (28-149)||(41377581-41377694)
chr5 (1-147)||(41106742-41106888)
chr5 (1-65)||(43280947-43281011)
chr5 (63-148)||(28828226-28828311)
[»] chr8 (11 HSPs)
chr8 (1-145)||(1548357-1548501)
chr8 (1-147)||(23033595-23033741)
chr8 (1-146)||(34784243-34784388)
chr8 (5-146)||(3117927-3118068)
chr8 (1-147)||(20900986-20901133)
chr8 (5-147)||(29168251-29168393)
chr8 (21-147)||(3376073-3376199)
chr8 (87-147)||(3277751-3277811)
chr8 (32-121)||(36881747-36881836)
chr8 (1-41)||(3277710-3277750)
chr8 (30-77)||(1469148-1469195)
[»] chr7 (9 HSPs)
chr7 (1-149)||(32775384-32775532)
chr7 (1-147)||(12858969-12859115)
chr7 (1-148)||(19886785-19886932)
chr7 (1-147)||(36167472-36167618)
chr7 (26-148)||(46082202-46082329)
chr7 (5-145)||(5465442-5465574)
chr7 (83-147)||(11599454-11599518)
chr7 (29-147)||(19780831-19780949)
chr7 (38-147)||(23636895-23637004)
[»] chr1 (5 HSPs)
chr1 (1-146)||(47523887-47524032)
chr1 (30-127)||(33966877-33966974)
chr1 (26-147)||(18990084-18990205)
chr1 (51-121)||(43866458-43866528)
chr1 (28-146)||(50204747-50204865)
[»] scaffold0325 (1 HSPs)
scaffold0325 (1-148)||(8559-8707)
[»] scaffold0302 (1 HSPs)
scaffold0302 (26-149)||(17329-17452)
[»] scaffold0768 (1 HSPs)
scaffold0768 (28-94)||(4430-4495)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 9454836 - 9455101
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9454836 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtggttacgttttt 9454935  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattgatcccaaggggaatgttgcacaaatggaggttcttgaattgcaggatcatgtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9454936 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattgatcccaaggggaatgttgcacaaatggaggttcttgaattgcaggatcatgtg 9455035  T
Q  201 atcccacgatcatattcgcgatcctactgacatcgctcttaactccattacctaactgagaataat 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9455036 atcccacgatcatattcgcgatcctactgacatcgctcttaactccattacctaactgagactaat 9455101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 53208575 - 53208429
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||  |||||||||||||||| ||    
T  53208575 ctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttatgaaccgtgttacgttcctcgtgtttacgttctt 53208476  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||    
T  53208475 tcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 53208429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 7323058 - 7323202
Alignment:
Q  3 gttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttc 102  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||||| ||||    
T  7323058 gttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttc 7323157  T
Q  103 accggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||||||||||||| |  | ||||||||||||||    
T  7323158 accggccgaccgatcctacgtaggaacttgttcctgactacattg 7323202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 32130377 - 32130520
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||||| |||    
T  32130377 tgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttcttt 32130476  T
Q  102 caccggccgaccgatcctacgtaggatcacgatcctgactacat 145  Q
    || ||||||||||||||||||||||| | || ||||||||||||    
T  32130477 catcggccgaccgatcctacgtaggaactcgttcctgactacat 32130520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 7227292 - 7227438
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||| |||| |||||| |||| |||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||    
T  7227292 ctgtttttcctctattttctctatctatttctctcaactctatcaacaacctaccgatcctaattacgaaccgtggtacattcctcgtgtttacgttctt 7227391  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||| |||| |||||||| ||||||| |||||||||||||||||    
T  7227392 tcaccggacgactgatcctacataggatctcgatcctgactacattg 7227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 50064084 - 50064233
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||| |||| || ||| || | ||| |||||||| |||||||| |||||||||||||||||||||||||| ||  |  ||||||| ||||| ||  |    
T  50064084 ctgtttttcctctatattctctgtttatatctctcaactctatcaataacctaccgatcctacttacgaaccgcgtctcgttcctcgtttttacattcct 50064183  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattgatc 150  Q
    ||| |||||||| |||||||||||||||| ||||||||||||||||||||    
T  50064184 tcagcggccgactgatcctacgtaggatctcgatcctgactacattgatc 50064233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 13425588 - 13425441
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  13425588 ctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 13425489  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattga 148  Q
    ||||||||||||||||||||||||||| | || |||||||||||||||    
T  13425488 tcaccggccgaccgatcctacgtaggaactcgttcctgactacattga 13425441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 23889931 - 23889796
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    |||||| |||| |||||| |||| ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||||  ||||||||||| |||| |||    
T  23889931 tgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctactaacgaaccgtgttacgttcctcgtgttttcgttcttt 23889832  T
Q  102 caccggccgaccgatcctacgtaggatcacgatcct 137  Q
    ||||||||||||| |||| ||||||| | |||||||    
T  23889831 caccggccgaccggtcctccgtaggacctcgatcct 23889796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 18133792 - 18133656
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||| |||| |||||| |||| ||||||| |||| |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||| ||||  |    
T  18133792 ctgtttttcctctattttctctatttatttctgtcaactctatcaaaaacctaccgatcctacttatgaaccgtgttacgttcctcgtgttttcgttcat 18133693  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcct 137  Q
    |||||||||||||| |||| ||||||| | |||||||    
T  18133692 tcaccggccgaccggtcctccgtaggacctcgatcct 18133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 25100895 - 25100779
Alignment:
Q  32 tctcaattctatcaacaacctaccgatcctacttacgaaccgtgtt-acactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatca 130  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||| ||  ||||||| |||| |||  |||||||||||||| |||||| ||||||||     
T  25100895 tctcaatactatcaacaacctaccgatcctacttacgaactgtgttaacgttcctcgtttttatgttccttcaccggccgaccaatcctatgtaggatct 25100796  T
Q  131 cgatcctgactacattg 147  Q
     |||||| |||||||||    
T  25100795 tgatcctaactacattg 25100779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 10875612 - 10875699
Alignment:
Q  63 cttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattgatc 150  Q
    ||||||||||||||||    |||||||||||||||  | || ||||||||||| ||||||||||||| |||||| ||| |||||||||    
T  10875612 cttacgaaccgtgttatgtccctcgtgtttacgttcctacatcggccgaccgaacctacgtaggatctcgatcccgaccacattgatc 10875699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 6539395 - 6539314
Alignment:
Q  40 ctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctac 121  Q
    ||||||||||| ||||||||||||||||||||| ||| |   ||||  ||||||||||  |||||| ||| |||||||||||    
T  6539395 ctatcaacaacttaccgatcctacttacgaaccatgtaatgttcctaatgtttacgttccttcaccagcctaccgatcctac 6539314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 2588380 - 2588236
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  2588380 ctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 2588281  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacat 145  Q
    ||||||||||||||||||||||||||| | || ||||||||||||    
T  2588280 tcaccggccgaccgatcctacgtaggaactcgttcctgactacat 2588236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 16497599 - 16497453
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  16497599 ctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 16497500  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||    
T  16497499 tcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 16497453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 145
Target Start/End: Complemental strand, 5650629 - 5650486
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||  |||||||||||||||| |||    
T  5650629 tgttttccctctattttccctatatatttctctcaattctatcgacagcctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttcttt 5650530  T
Q  102 caccggccgaccgatcctacgtaggatcacgatcctgactacat 145  Q
    ||||||||||||||||||| |||||| | || ||||||||||||    
T  5650529 caccggccgaccgatcctatgtaggaactcgttcctgactacat 5650486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 49577451 - 49577305
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||||  ||||||||||||| || ||    
T  49577451 ctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttatgaactgtgttacgttcctcgtgtttacattctt 49577352  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||    
T  49577351 tcaccggccgaccgatcctacgtaggatctcgatcatgactacattg 49577305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 4289968 - 4289819
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||| ||    
T  4289968 ctgttttccctctattttctctatctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgggttacgttcctcgtgtttaagttctt 4289869  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattgatc 150  Q
    ||| ||||| ||||||||||||||||||| |||| |||||||||||||||    
T  4289868 tcaacggccaaccgatcctacgtaggatctcgatactgactacattgatc 4289819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 39598998 - 39598852
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||| |||| |||||| ||||| ||| ||||||||||||||||||||||||||||| ||| |||  |||||||||||||||| ||    
T  39598998 ctgttttccctctattttctctatctatttcgctcaactctgtcaacaacctaccgatcctacttacgaacagtgctacgttcctcgtgtttacgttctt 39598899  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    |||| | |||||||||||||| ||||||| |||||||||||||||||    
T  39598898 tcactgcccgaccgatcctacataggatctcgatcctgactacattg 39598852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 16497790 - 16497714
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgtt 77  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  16497790 ctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgtt 16497714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 52249415 - 52249337
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttac 79  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||    
T  52249415 ctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctactgacgaaccgtgttac 52249337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 147
Target Start/End: Original strand, 55911385 - 55911500
Alignment:
Q  32 tctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcac 131  Q
    |||||| ||||||||||||||||||||||||||||  || ||||||||   || | |||||| | | ||||||| ||| ||| ||||||| ||| | | |    
T  55911385 tctcaactctatcaacaacctaccgatcctacttataaatcgtgttacgacccacatgtttatgatatttcaccagcctaccaatcctacttagaaactc 55911484  T
Q  132 gatcctgactacattg 147  Q
    || |||||||||||||    
T  55911485 gaacctgactacattg 55911500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 14066582 - 14066498
Alignment:
Q  63 cttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||| ||||||| |||  ||||||||||||| ||| || |   |||||| |||||||| ||||||| |||||||||||| ||||    
T  14066582 cttacaaaccgtgatacgttcctcgtgtttacatttctttattagccgactgatcctacttaggatctcgatcctgactatattg 14066498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 146
Target Start/End: Original strand, 44673382 - 44673526
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| |||    
T  44673382 tgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttcttt 44673481  T
Q  102 caccggccgaccgatcctacgtaggatcacgatcctgactacatt 146  Q
    |||||||||||||||||||||||||| | || |||||||||||||    
T  44673482 caccggccgaccgatcctacgtaggaactcgttcctgactacatt 44673526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 25438509 - 25438655
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||||||||||||||||| || |||| |||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  25438509 ctgttttccctctattttccctatatatttctctcacttatatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 25438608  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||||||||||||||| | || ||||||||||||||    
T  25438609 tcaccggccgaccgatcctacgtaggaactcgttcctgactacattg 25438655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 36536271 - 36536125
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||| |||| |||||| |||| |||| ||||||| ||||||||||||||||||||||||||||| |||||||||||   ||| |||||||| || ||    
T  36536271 ctgtttttcctctattttctctatctattcctctcaactctatcaacaacctaccgatcctacttacaaaccgtgttacgtgccttgtgtttactttctt 36536172  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    |||| |||||||| ||||||||||||||| |||| ||||||||||||    
T  36536171 tcactggccgaccaatcctacgtaggatctcgattctgactacattg 36536125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 147
Target Start/End: Complemental strand, 37154727 - 37154589
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    ||||| ||||| |||||| ||||| ||||||||||||||||||       ||| ||||||||||||||||||||||||  |||||||||||||||| |||    
T  37154727 tgtttaccctctattttctctatacatttctctcaattctatc-------tactgatcctacttacgaaccgtgttacgttcctcgtgtttacgttcttt 37154635  T
Q  102 caccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||  || |||||| |||||||||||| ||||| |||||||||||    
T  37154634 caccaaccaaccgattctacgtaggatctcgatcttgactacattg 37154589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 33391842 - 33391758
Alignment:
Q  63 cttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||| |||||||||||  ||||||||||||||||   ||||||||||||| |||||| ||||||||  ||||||||||||||||    
T  33391842 cttacaaaccgtgttacgttcctcgtgtttacgttccatcaccggccgaccaatcctatgtaggatcttgatcctgactacattg 33391758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 41715031 - 41714894
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    ||||||||| | |||||| |||| |||| || ||||  |||| ||||||||||| ||||||||||| || |||||||   |||| ||||||||||| |||    
T  41715031 tgttttcccactattttctctatctattactttcaacactattaacaacctaccaatcctacttacaaatcgtgttatgttccttgtgtttacgttcttt 41714932  T
Q  102 caccggccgaccgatcctacgtaggatcacgatcctga 139  Q
    | |||  | ||| ||| ||||||||||| |||||||||    
T  41714931 cgccgaacaaccaatcatacgtaggatctcgatcctga 41714894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 94
Target Start/End: Complemental strand, 42975744 - 42975653
Alignment:
Q  3 gttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttac 94  Q
    ||||| |||| |||||| || | | |||||||||| ||||||||||||||||||||||||||||  || ||||||||   ||||||||||||    
T  42975744 gtttttcctctattttctctgtttttttctctcaactctatcaacaacctaccgatcctacttataaatcgtgttacgaccctcgtgtttac 42975653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 26377615 - 26377669
Alignment:
Q  91 ttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacat 145  Q
    |||||||  ||||||||||||||||||||| ||| |||| |||||||||||||||    
T  26377615 ttacgttccttcaccggccgaccgatcctatgtacgatctcgatcctgactacat 26377669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 950599 - 950515
Alignment:
Q  37 attctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctac 121  Q
    ||||||||||||||||||| ||||||||||||||  |||||||   |||||||||| || |  || ||| ||| |||||||||||    
T  950599 attctatcaacaacctaccaatcctacttacgaattgtgttacgaccctcgtgtttgcgatcatttaccagcctaccgatcctac 950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 40712645 - 40712598
Alignment:
Q  28 tttctctcaattctatcaacaacctaccgatcctacttacgaaccgtg 75  Q
    |||||||||| |||||||| |||||||| |||||||||||| ||||||    
T  40712645 tttctctcaactctatcaaaaacctaccaatcctacttacggaccgtg 40712598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 21005858 - 21005772
Alignment:
Q  63 cttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattgat 149  Q
    |||||||||||||||||  ||| ||  |||||||   |||||||||||| ||| ||||||||| | | || ||||||||||||||||    
T  21005858 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattgat 21005772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 39573996 - 39573912
Alignment:
Q  63 cttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    |||||||||||||||||  ||| ||  |||||||   |||||||||||| ||| ||||||||| | | || ||||||||||||||    
T  39573996 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattg 39573912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 7992277 - 7992131
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  7992277 ctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 7992178  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||||||||||||||| | || || |||||||||||    
T  7992177 tcaccggccgaccgatcctacgtaggaactcgttcatgactacattg 7992131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 145
Target Start/End: Original strand, 28276949 - 28277068
Alignment:
Q  26 tatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtag 125  Q
    |||||||||| |||||||||||||||||  |||||||||||||||| |||||||  ||||||| |||||||| ||||||||||| | |||||||||||||    
T  28276949 tatttctctctattctatcaacaacctattgatcctacttacgaactgtgttacgttcctcgtatttacgttctttcaccggccaatcgatcctacgtag 28277048  T
Q  126 gatcacgatcctgactacat 145  Q
    |||| | |||||||||||||    
T  28277049 gatctcaatcctgactacat 28277068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 135
Target Start/End: Complemental strand, 10916991 - 10916858
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    |||||| |||| |||||| ||||||||||||||||| |||||||| || ||| |||  |||||||  || ||||||||  |||||||||||| ||| |||    
T  10916991 tgtttttcctctattttctctatatatttctctcaactctatcaataatctatcgactctacttataaaacgtgttacgttcctcgtgtttatgttcttt 10916892  T
Q  102 caccggccgaccgatcctacgtaggatcacgatc 135  Q
    ||||||||||   || |||||||||||| |||||    
T  10916891 caccggccgattaattctacgtaggatctcgatc 10916858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 5240662 - 5240786
Alignment:
Q  2 tgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgtttttt 101  Q
    |||||| |||| |||||  |||| |||||||||||| |||||||||||||||| ||||||||||| ||||| |||||||  |||||||||||  || |||    
T  5240662 tgtttttcctctatttttactatctatttctctcaactctatcaacaacctactgatcctacttatgaaccatgttacatccctcgtgtttaaattcttt 5240761  T
Q  102 caccggccgaccgatcctacgtagg 126  Q
    ||||  ||||| ||| ||| |||||    
T  5240762 caccatccgacagattctatgtagg 5240786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 41377694 - 41377581
Alignment:
Q  28 tttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtagga 127  Q
    |||||||||| ||||||||||||||||| ||||||||||| || ||||||||  ||||||||        |||||||| || ||||| |||||| |||||    
T  41377694 tttctctcaactctatcaacaacctaccaatcctacttacaaatcgtgttacgttcctcgtg--------ttttcaccagctgaccggtcctacttagga 41377603  T
Q  128 tcacgatcctgactacattgat 149  Q
    |  |||||||||||||||||||    
T  41377602 tatcgatcctgactacattgat 41377581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 41106742 - 41106888
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||| |  | | ||| |||||| |||||||||||||||| ||||||||||||||| |||||||    ||| ||||||||  | ||    
T  41106742 ctgttttccctctattttctcagtttttttttctcaactctatcaacaacctacggatcctacttacgaatcgtgttatggcccttgtgtttacaatctt 41106841  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||| ||| || |||||||| ||  | ||| | |||||||||||||    
T  41106842 tcaccagcctactgatcctacttataaacacaaacctgactacattg 41106888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 43281011 - 43280947
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctactt 65  Q
    ||||||| ||||||||||| || | | ||||| |||| ||||||||||||||||||||| |||||    
T  43281011 ctgtttttcctcaattttctctgtttttttctttcaactctatcaacaacctaccgatcatactt 43280947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 148
Target Start/End: Original strand, 28828226 - 28828311
Alignment:
Q  63 cttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattga 148  Q
    |||||||||||||||||  ||| ||  |||||||   |||||||||||| ||| ||||||||| | | || |||||||||||||||    
T  28828226 cttacgaaccgtgttacgttccccgactttacgtcccttcaccggccgatcgaacctacgtagaaactcgttcctgactacattga 28828311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 1548357 - 1548501
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  1548357 ctgttttccctctattttccctatacatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 1548456  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacat 145  Q
    ||||||||||||||||||||||||||| | || ||||||||||||    
T  1548457 tcaccggccgaccgatcctacgtaggaactcgttcctgactacat 1548501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 23033595 - 23033741
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  23033595 ctgttttccctctattttccctatatatttctctcaattctattgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 23033694  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||||||| ||||||||||| | || ||||||||||||||    
T  23033695 tcaccggccgaccgaacctacgtaggaactcgttcctgactacattg 23033741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34784388 - 34784243
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||  ||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||  |||||||||||| ||| ||    
T  34784388 ctgttttccctatattttccctatatatttctctcaattctatcgacaacctaacgatcctacttacaaaccgtgttacgttcctcgtgtttatgttctt 34784289  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacatt 146  Q
    ||||||||||||||||||||||||||| | || |||||||||||||    
T  34784288 tcaccggccgaccgatcctacgtaggaactcgttcctgactacatt 34784243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 3117927 - 3118068
Alignment:
Q  5 tttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcac 104  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||  |||||||||||||||| ||||||    
T  3117927 tttccctctattttccctatatatttctctcaattctatctacaacctatcgatcctacttacgaaccatgttacgttcctcgtgtttacgttctttcac 3118026  T
Q  105 cggccgaccgatcctacgtaggatcacgatcctgactacatt 146  Q
    ||||||||| |||||| |||||| | || |||||||||||||    
T  3118027 cggccgaccaatcctatgtaggaactcgttcctgactacatt 3118068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 20900986 - 20901133
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| ||||||||  ||||| ||||||||||||||||||  |||||||||||||||| ||    
T  20900986 ctgttttccctctattttccctgtatatttctctcaattctatcgacaacctattgatcccacttacgaaccgtgttacgttcctcgtgtttacgttctt 20901085  T
Q  101 tcaccggccgaccgatcctacgtaggatcacg-atcctgactacattg 147  Q
    ||||||||||||||||||||||||||| | ||  ||||||||||||||    
T  20901086 tcaccggccgaccgatcctacgtaggaactcgtttcctgactacattg 20901133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 147
Target Start/End: Complemental strand, 29168393 - 29168251
Alignment:
Q  5 tttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcac 104  Q
    |||||| | |||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| ||||||    
T  29168393 tttccccctattttctctatctatctctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcatgtttacgttctttcac 29168294  T
Q  105 cggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    |||||||||||||||| |||||||| | |||||||||||||||    
T  29168293 cggccgaccgatcctatgtaggatctctatcctgactacattg 29168251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 3376199 - 3376073
Alignment:
Q  21 ctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatccta 120  Q
    |||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| |||| |||||| ||||    
T  3376199 ctatctatttatctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcatcggcggaccgaaccta 3376100  T
Q  121 cgtaggatcacgatcctgactacattg 147  Q
    |||||||||  ||||||||||||||||    
T  3376099 cgtaggatcttgatcctgactacattg 3376073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 3277751 - 3277811
Alignment:
Q  87 gtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||||| |||||||||||||||||||||| |||||| | || ||||||||||||||    
T  3277751 gtgtttacgttctttcaccggccgaccgatcctaagtaggaactcgttcctgactacattg 3277811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 36881747 - 36881836
Alignment:
Q  32 tctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctac 121  Q
    |||||| ||||||||||||| |||| ||||||||||||| |||||||||  | ||| ||||||| | ||||||| |||  ||||||||||    
T  36881747 tctcaaatctatcaacaaccaaccggtcctacttacgaatcgtgttacaaccttcgcgtttacgatctttcaccagcctgccgatcctac 36881836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3277710 - 3277750
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattct 41  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  3277710 ctgttttccctctattttccctatatatttctctcaattct 3277750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 1469148 - 1469195
Alignment:
Q  30 tctctcaattctatcaacaacctaccgatcctacttacgaaccgtgtt 77  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  1469148 tctctcaactctatgaacaacctaccgatcctacttacggaccgtgtt 1469195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 7e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 32775384 - 32775532
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  32775384 ctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 32775483  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattgat 149  Q
    |||||||||||||||||||||| |||| | || ||||||||||||||||    
T  32775484 tcaccggccgaccgatcctacgcaggaactcgttcctgactacattgat 32775532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 12859115 - 12858969
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| |||||||||| ||    
T  12859115 ctgttttccctctattttccctatatatttctctcaattctatcaacaacctatcgatcctacttacgaaccgtgttacgttcctcatgtttacgttctt 12859016  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    |||||||||||||||| |||||||||| | || ||||||||||||||    
T  12859015 tcaccggccgaccgatgctacgtaggaactcgttcctgactacattg 12858969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 19886785 - 19886932
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  |||||||||||||||| ||    
T  19886785 ctgttttccctctattttccctatatatttctctcaattctatcgacaacctatcgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctt 19886884  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattga 148  Q
    ||||||||||||||||||||||  ||| | || |||||||||||||||    
T  19886885 tcaccggccgaccgatcctacgctggaactcgttcctgactacattga 19886932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 36167618 - 36167472
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||| |||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||  ||||||||||||| || ||    
T  36167618 ctgtttttcctctattttccctatatatttctctcaattctatcgacaacctatcaatcctacttacgaaccgtgttacgttcctcgtgtttacattctt 36167519  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    ||||||||| ||||||||||||||||| | || ||||||||||||||    
T  36167518 tcaccggccaaccgatcctacgtaggaactcgttcctgactacattg 36167472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 46082329 - 46082202
Alignment:
Q  26 tatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccga-----ccgatccta 120  Q
    |||||||||||| ||||||||||||||| | ||||||| || ||||||||||||  |||| |||||||||||  ||||||||| ||     |||||||||    
T  46082329 tatttctctcaactctatcaacaacctagcaatcctacatatgaaccgtgttacgttccttgtgtttacgttccttcaccggctgaccgatccgatccta 46082230  T
Q  121 cgtaggatcacgatcctgactacattga 148  Q
    | |||||||  |||||||||||||||||    
T  46082229 cttaggatcttgatcctgactacattga 46082202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 5465574 - 5465442
Alignment:
Q  5 tttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcac 104  Q
    |||||||| |||||| |||| |||||||||||| ||||||||||||||||||||      |||||||| ||||||  |||| ||||||||||| ||||||    
T  5465574 tttccctctattttcactatctatttctctcaactctatcaacaacctaccgat-----atacgaaccatgttacgttccttgtgtttacgttctttcac 5465480  T
Q  105 cggccgaccgatcctacgtaggatcacgatcctgactacat 145  Q
    | | ||| |||||||   ||||||| ||||||| |||||||    
T  5465479 cagtcgaacgatcct---taggatctcgatcctaactacat 5465442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 11599518 - 11599454
Alignment:
Q  83 cctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcctgactacattg 147  Q
    |||||||||||||||  |||| ||||||||||| ||||||||||||| |||||||||||||||||    
T  11599518 cctcgtgtttacgttccttcatcggccgaccgaacctacgtaggatctcgatcctgactacattg 11599454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 147
Target Start/End: Complemental strand, 19780949 - 19780831
Alignment:
Q  29 ttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggat 128  Q
    ||||||||| ||||||||||| ||||| |||||||||||||| |||||||    ||||||||||||| | ||||||| ||| || |||| ||| ||  |     
T  19780949 ttctctcaactctatcaacaagctacctatcctacttacgaatcgtgttaagaccctcgtgtttacgatctttcaccagcctactgatcatacttaaaaa 19780850  T
Q  129 cacgatcctgactacattg 147  Q
    | ||| |||||||||||||    
T  19780849 ctcgaacctgactacattg 19780831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 23636895 - 23637004
Alignment:
Q  38 ttctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtaggatcacgatcct 137  Q
    |||| |||||||||||| |||||||||| ||||  ||||||||  |||||  |||||| | ||| ||||| | ||||||||||| ||  | | ||| |||    
T  23636895 ttctctcaacaacctactgatcctacttgcgaattgtgttacaaccctcgcatttacgatcttttaccggtctaccgatcctacttaaaaactcgaacct 23636994  T
Q  138 gactacattg 147  Q
    ||||||||||    
T  23636995 gactacattg 23637004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 47523887 - 47524032
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttt 100  Q
    ||||||||| || ||||||  | | |||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||| ||    
T  47523887 ctgttttccgtctattttctatctctatttctctcaactctatcaacaacctaccgatcctacttacgaaccgtgttacgttccttgtgtttacgttctt 47523986  T
Q  101 tcaccggccgaccgatcctacgtaggatcacgatcctgactacatt 146  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  47523987 tcaccggccgaccgatcctacataggatctcgatcctgactacatt 47524032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 127
Target Start/End: Original strand, 33966877 - 33966974
Alignment:
Q  30 tctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtagga 127  Q
    |||||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||  ||||||||  |||||||||| || ||||||||||||||    
T  33966877 tctctcaactctatcaataacctaccgatcctacttacgaactgtgttacattcctcgcttttacgttccttcaccggcctactgatcctacgtagga 33966974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 147
Target Start/End: Complemental strand, 18990205 - 18990084
Alignment:
Q  26 tatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtag 125  Q
    |||||||||||| |||||||||||||||||||||| || ||| |||| |||||   ||||||| ||||||||  ||||||||||| || | ||||||| |    
T  18990205 tatttctctcaactctatcaacaacctaccgatccaacatacaaaccatgttatgttcctcgtatttacgttccttcaccggccgtcctaccctacgtgg 18990106  T
Q  126 gatcacgatcctgactacattg 147  Q
    |||| | ||||| |||||||||    
T  18990105 gatctcaatcctaactacattg 18990084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 43866458 - 43866528
Alignment:
Q  51 ctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctac 121  Q
    |||| ||||||||||||||||||||||||  |||||||||||||||| ||| |  |||||||| |||||||    
T  43866458 ctactgatcctacttacgaaccgtgttacgttcctcgtgtttacgttctttaattggccgaccaatcctac 43866528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 50204747 - 50204865
Alignment:
Q  28 tttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtagga 127  Q
    |||| ||||| |||||||||||||||| |||| |||||||||| ||||||||   |||| |||||||  | ||||||| ||| ||||||||||| ||  |    
T  50204747 tttcactcaactctatcaacaacctactgatcttacttacgaagcgtgttacgaccctcatgtttacaatctttcaccagcctaccgatcctacttaaaa 50204846  T
Q  128 tcacgatcctgactacatt 146  Q
     | ||| ||||||||||||    
T  50204847 actcgaacctgactacatt 50204865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 8559 - 8707
Alignment:
Q  1 ctgttttccctcaattttccctatatatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgttt-acgtttt 99  Q
    ||||||| |||| |||||| |||| |||||| ||||| |||||||| |||||| |||||||| |||| |||||||| ||  ||||||||||| |||||      
T  8559 ctgtttttcctctattttctctatttatttcactcaactctatcaaaaacctaacgatcctatttacaaaccgtgtcacgttcctcgtgttttacgttcg 8658  T
Q  100 ttcaccggccgaccgatcctacgtaggatcacgatcctgactacattga 148  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||    
T  8659 ttcaccggccgaccgatcctacgtaggatctccatcctgactacattga 8707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 17329 - 17452
Alignment:
Q  26 tatttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttacgttttttcaccggccgaccgatcctacgtag 125  Q
    |||||||||||| |||||||||||  || || ||||||||||||||||||||||  |||||||||||||||| ||||||| |||| | ||||||||||||    
T  17329 tatttctctcaactctatcaacaaagtatcgctcctacttacgaaccgtgttacgttcctcgtgtttacgttctttcacctgccggcagatcctacgtag 17428  T
Q  126 gatcacgatcctgactacattgat 149  Q
    |||| ||||||||| |||||||||    
T  17429 gatctcgatcctgattacattgat 17452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0768 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0768
Description:

Target: scaffold0768; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 4430 - 4495
Alignment:
Q  28 tttctctcaattctatcaacaacctaccgatcctacttacgaaccgtgttacactcctcgtgtttac 94  Q
    |||||||||| |||||||||| |||| ||||||||||||||||| |||||||   ||||||||||||    
T  4430 tttctctcaactctatcaaca-cctatcgatcctacttacgaactgtgttacgaccctcgtgtttac 4495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University