View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20433_low_25 (Length: 251)

Name: NF20433_low_25
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20433_low_25
NF20433_low_25
[»] chr1 (17 HSPs)
chr1 (14-235)||(9300146-9300367)
chr1 (14-223)||(9257355-9257564)
chr1 (24-235)||(9466568-9466779)
chr1 (20-210)||(9364455-9364645)
chr1 (20-229)||(9242380-9242589)
chr1 (20-209)||(9337596-9337785)
chr1 (39-223)||(8927028-8927212)
chr1 (39-231)||(8939454-8939646)
chr1 (39-229)||(8962381-8962571)
chr1 (27-208)||(9420547-9420728)
chr1 (27-136)||(9437702-9437811)
chr1 (21-124)||(10992814-10992917)
chr1 (21-101)||(11026270-11026350)
chr1 (21-101)||(11040973-11041053)
chr1 (57-172)||(8979098-8979213)
chr1 (30-133)||(9495346-9495449)
chr1 (21-97)||(10930610-10930686)
[»] chr3 (1 HSPs)
chr3 (14-223)||(9171555-9171764)
[»] scaffold0690 (1 HSPs)
scaffold0690 (20-223)||(1664-1867)
[»] chr6 (1 HSPs)
chr6 (20-223)||(15910239-15910442)
[»] chr4 (1 HSPs)
chr4 (60-184)||(27696131-27696255)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 235
Target Start/End: Original strand, 9300146 - 9300367
Alignment:
Q  14 agatagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcac 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9300146 agatagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatagagtatcttcaccaaggttgtgatcaaagaattcttcac 9300245  T
Q  114 tttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtacta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300246 tttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtacta 9300345  T
Q  214 tatctatgaccgcggccaaagg 235  Q
    ||||||||||||||||||||||    
T  9300346 tatctatgaccgcggccaaagg 9300367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 223
Target Start/End: Complemental strand, 9257564 - 9257355
Alignment:
Q  14 agatagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcac 113  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9257564 agatagtttccttggatgggacaagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaagttgtgatcaaagaattcttcac 9257465  T
Q  114 tttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtacta 213  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||||    
T  9257464 tttgacatcaatcctcataatgtcttgatcgatgacaatttaaccccaaaaattacaaattttggtttggctaagatgtgctcaaaaaatcaaagtacta 9257365  T
Q  214 tatctatgac 223  Q
    ||||||||||    
T  9257364 tatctatgac 9257355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 9466779 - 9466568
Alignment:
Q  24 cttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatca 123  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9466779 cttggatgggacacgctgcaacaaattgctctaggcatagccaatggaattgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatca 9466680  T
Q  124 atcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgac 223  Q
    |||||||||| |||||| | ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||| ||||||  | ||||||||    
T  9466679 atcctcataatgtcttgttagatgagaatttcactcccaaaattacagacttcggtttggctaagatgtgctcgaaaaatcgaagtacagtgtctatgac 9466580  T
Q  224 cgcggccaaagg 235  Q
    ||| ||||||||    
T  9466579 cgcagccaaagg 9466568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 9364455 - 9364645
Alignment:
Q  20 tttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgac 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||    
T  9364455 tttccttggatgggataagttgcaaaaaattgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgac 9364554  T
Q  120 atcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagta 210  Q
    |||||||||||||| |||||| | ||||||||||| || || ||||||||||| || |||||||| ||||| || || |||||||||||||    
T  9364555 atcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagta 9364645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 9242589 - 9242380
Alignment:
Q  20 tttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgac 119  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||||||    
T  9242589 tttccttggatgggataagttgcaaaaaattgctctaggtatagccaatggcattgagtatctccaccaaggttgtgatcaaagaattctacactttgac 9242490  T
Q  120 atcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatcta 219  Q
    ||||||||| |||| |||||| | ||||||||||| |  ||  |||||||||| || |||||||| |||||||| |||||||||||||||| | |||| |    
T  9242489 atcaatcctaataatgtcttgttagatgacaatttcattccccaaattacagattttggtttggccaagatgtgttcgaaaaatcaaagtattgtatcca 9242390  T
Q  220 tgaccgcggc 229  Q
    |||| |||||    
T  9242389 tgactgcggc 9242380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 9337596 - 9337785
Alignment:
Q  20 tttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgac 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||||||    
T  9337596 tttccttggatgggataagttgcaaaaaattgctctaggcatagcaaatggtattgagtatctccaccaaggttgtgatcaaagaattctacactttgac 9337695  T
Q  120 atcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagt 209  Q
    |||||||||||||| |||||| | ||||||||||| || || ||||||||||| || |||||||| ||||| || || ||||||||||||    
T  9337696 atcaatcctcataatgtcttgttagatgacaatttcactcccaaaattacagattttggtttggccaagatatgttcaaaaaatcaaagt 9337785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 223
Target Start/End: Original strand, 8927028 - 8927212
Alignment:
Q  39 ttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtct 138  Q
    ||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||||| || || ||||    
T  8927028 ttgcaacaaattgctctaggcattgccaatgggattgagtatcttcaccaaggttgtgatcatagaattcttcactttgatatcaatccccacaatgtct 8927127  T
Q  139 tgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgac 223  Q
    || | ||||||||||| |  ||||||||  | ||||||||||| || ||| ||||||| |||||||| || ||| |||| |||||    
T  8927128 tgttagatgacaatttcattccaaaaatatcggacttcggtttagcgaagctgtgctctaaaaatcatagcactgtatcgatgac 8927212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 231
Target Start/End: Original strand, 8939454 - 8939646
Alignment:
Q  39 ttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtct 138  Q
    ||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |||||||| |||||||||||||| || |||||||| ||||| || |    
T  8939454 ttgcaacaaattgctcttggcattgccaatgggattgagtatcttcaccaaggctgtgatcatagaattcttcacttcgatatcaatccacataatgtat 8939553  T
Q  139 tgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggcca 231  Q
    |  | |||||||||||    ||||||||  ||||||||||||| |||||| ||||||| ||||||||||||||  |||| |||||||| ||||    
T  8939554 tattagatgacaatttcgttccaaaaatatcagacttcggtttagctaagctgtgctccaaaaatcaaagtacagtatcaatgaccgcagcca 8939646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 39 - 229
Target Start/End: Original strand, 8962381 - 8962571
Alignment:
Q  39 ttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtct 138  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| |||||||| || ||  |||    
T  8962381 ttgcaacagattgctctaggcattgccaatggaattgagtatcttcaccagggctgtgatcaaagaattcttcattttgatatcaatccgcacaatatct 8962480  T
Q  139 tgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatctatgaccgcggc 229  Q
    || | ||||||||||| || ||||||||  ||||||| ||||| || ||| ||||||| |||||||||| || | |||| ||||| |||||    
T  8962481 tgttagatgacaattttactccaaaaatatcagactttggtttagccaagttgtgctccaaaaatcaaactattgtatcgatgactgcggc 8962571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 9420728 - 9420547
Alignment:
Q  27 ggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatc 126  Q
    |||||||| ||| | |||||||||||||| ||||||||||| || || ||||||||||||    ||||||||||   |||||||||||| || || ||||    
T  9420728 ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatc 9420629  T
Q  127 ctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaag 208  Q
    |  ||||||| ||  | |||||||| ||    ||||||||||| || || |||||||| ||  ||||||| |||||||||||    
T  9420628 cctataacgtgttattagatgacaagtttgttccaaaaattactgattttggtttggcgaaattgtgctctaaaaatcaaag 9420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 9437811 - 9437702
Alignment:
Q  27 ggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatc 126  Q
    |||||||| ||| | |||||||||||||| ||||||||||| || || ||||||||||||    ||||||||||   |||||||||||| || || ||||    
T  9437811 ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttcacatgagttgtgatcagcaaattcttcacttcgatattaatc 9437712  T
Q  127 ctcataacgt 136  Q
    | ||||||||    
T  9437711 cccataacgt 9437702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 10992814 - 10992917
Alignment:
Q  21 ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgaca 120  Q
    |||||||| ||| | ||||||||  |||||||| |||| ||||| || ||| | ||||||||||| ||||||||||||||| | || ||||| ||||| |    
T  10992814 ttccttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtgatcaacgcatccttcattttgata 10992913  T
Q  121 tcaa 124  Q
    ||||    
T  10992914 tcaa 10992917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 11026270 - 11026350
Alignment:
Q  21 ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaa 101  Q
    |||||||| ||| | ||||||||  |||||||| |||| ||||| || ||||| || |||||||| |||||||||||||||    
T  11026270 ttccttggctggaaaaagttgcacgaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa 11026350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 11040973 - 11041053
Alignment:
Q  21 ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaa 101  Q
    |||||||| ||| | ||||||||  |||||||| |||| ||||| || ||||| || |||||||| |||||||||||||||    
T  11040973 ttccttggctggaaaaagttgcacgaaattgctttaggaatagctaaaggaattgaatatcttcatcaaggttgtgatcaa 11041053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 8979213 - 8979098
Alignment:
Q  57 ggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaa 156  Q
    ||||||||||  ||||| ||||||||||| || ||||||  |||   ||| ||||| ||||||||||| ||||| || || ||| |||||||||  ||||    
T  8979213 ggcatagccagaggaattgagtatcttcatcagggttgtagtcattcaatccttcattttgacatcaaccctcacaatgttttgctcgatgacacattaa 8979114  T
Q  157 ccccaaaaattacaga 172  Q
    | ||||||||| ||||    
T  8979113 ctccaaaaatttcaga 8979098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 9495346 - 9495449
Alignment:
Q  30 tgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctc 129  Q
    ||||| ||||| ||| ||||||| || || ||||| || ||||| ||||||||||| ||||| ||||| || || || ||||||||||| || || ||||    
T  9495346 tgggagaagttacaagaaattgcgcttggaatagcgaaaggaattgagtatcttcatcaaggatgtgaccagaggatacttcactttgatataaaacctc 9495445  T
Q  130 ataa 133  Q
    ||||    
T  9495446 ataa 9495449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 10930610 - 10930686
Alignment:
Q  21 ttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtga 97  Q
    |||||||| ||| | ||||||||  |||||||| |||| ||||| || ||| | ||||||||||| |||||||||||    
T  10930610 ttccttggttggaaaaagttgcatgaaattgctttaggtatagctaaaggagttgagtatcttcatcaaggttgtga 10930686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 9171555 - 9171764
Alignment:
Q  14 agatagtttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcac 113  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  9171555 agatagtttccttagatgggacaagttgcaacaaattgctctaggaatagccaatggaattgagtatctgcaccaaggttgtgatcaaagaattcttcac 9171654  T
Q  114 tttgacatcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtacta 213  Q
    |||||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  9171655 tttgacattaatcctcataacgtcttactagatgacaatttcaccccaaaaattacagacttcggtttggctaagttgtgctcaaaaaatcaaagtacta 9171754  T
Q  214 tatctatgac 223  Q
    |||| |||||    
T  9171755 tatcaatgac 9171764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 1664 - 1867
Alignment:
Q  20 tttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgac 119  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | |||||||||    
T  1664 tttccttggatgggataaattgcaacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgac 1763  T
Q  120 atcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatcta 219  Q
    ||||||||||||||  ||||| | ||||||||||| || || ||||| ||||| || ||||||||||||||||| |||||||||||||||| | |||| |    
T  1764 atcaatcctcataatatcttgctagatgacaatttcactcccaaaatcacagattttggtttggctaagatgtgttcgaaaaatcaaagtaatgtatcca 1863  T
Q  220 tgac 223  Q
    ||||    
T  1864 tgac 1867  T

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Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 15910442 - 15910239
Alignment:
Q  20 tttccttggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgac 119  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||| | |||||||||    
T  15910442 tttccttggatgggataaattgcaacaaattgctctaggcatagctaatggcattgagtatctccaccaaggttgtgatcaaagaattttacactttgac 15910343  T
Q  120 atcaatcctcataacgtcttgatcgatgacaatttaaccccaaaaattacagacttcggtttggctaagatgtgctcgaaaaatcaaagtactatatcta 219  Q
    ||||||||||||||  ||||| | ||||||||||| || || ||||| ||||| || ||||||||||||||||| |||||||||||||||| | |||| |    
T  15910342 atcaatcctcataatatcttgctagatgacaatttcactcccaaaatcacagattttggtttggctaagatgtgttcgaaaaatcaaagtaatgtatcca 15910243  T
Q  220 tgac 223  Q
    ||||    
T  15910242 tgac 15910239  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 27696131 - 27696255
Alignment:
Q  60 atagccaatggaatcgagtatcttcaccaaggttgtgatcaaagaattcttcactttgacatcaatcctcataacgtcttgatcgatgacaatttaaccc 159  Q
    ||||| || ||||| ||||||||||| |||||||||||| || ||||||| || ||||| ||||| ||||||||||| ||| | || |||||||| || |    
T  27696131 atagcgaagggaattgagtatcttcatcaaggttgtgataaacgaattctccattttgatatcaaacctcataacgtattgctagacgacaatttcacac 27696230  T
Q  160 caaaaattacagacttcggtttggc 184  Q
    | |||||| | || || ||||||||    
T  27696231 ccaaaatttctgattttggtttggc 27696255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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