View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_27 (Length: 243)
Name: NF20433_low_27
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 3872061 - 3871899
Alignment:
| Q |
62 |
catgttctttctccttcatcattcattattgaacctgtttatctgagcccagaaagctataactaaattttctatgtataaattccaaacacattttact |
161 |
Q |
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| T |
3872061 |
catgttctttctccttgatcattcattattgaacttgttcatctaagcccggaaagctagatctaaattctctatgtatcaattccaaacccattttacg |
3871962 |
T |
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| Q |
162 |
acatccacataaaagaaatttctcacaaatccattccataaactattctacgaaggttgccta |
224 |
Q |
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| T |
3871961 |
acatccacataaaataaatttctcacaaatccattccataaactattctactaaggtttccta |
3871899 |
T |
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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 45991979 - 45991901
Alignment:
| Q |
134 |
tatgtataaattccaaacacattttactacatccacataaaa-gaaatttctcacaaatccattccataaactattctac |
212 |
Q |
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| T |
45991979 |
tatgtatcaattctaaac-cattttacgacatccacataaaaagaaatttctcacagatccattccataaactattctac |
45991901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 46151899 - 46151821
Alignment:
| Q |
134 |
tatgtataaattccaaacacattttactacatccacataaaa-gaaatttctcacaaatccattccataaactattctac |
212 |
Q |
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||||||| ||||| |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46151899 |
tatgtatcaattctaaac-cactttacgacatccacataaaaagaaatttctcacaaatccattccataaactattctac |
46151821 |
T |
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