View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_4 (Length: 533)
Name: NF20433_low_4
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 42934508 - 42935031
Alignment:
| Q |
1 |
gtccatttcacacttttcttcaataccttcaatccacaaaagttttggacactttccaaaaccaagcaaacaacactgaagaaggaatcactatctttgt |
100 |
Q |
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| T |
42934508 |
gtccatttcacacttttcttcaataccttcaatccacaaaagttttggacactttccaaaaccaagcaaacaacactgaagaaggaatcactatctttgt |
42934607 |
T |
|
| Q |
101 |
tccaaaagacagttctttcgcatcattgaagaaaccttctttatccaaactcaaagatgatgagataaaacaagtgattcttttccatgctttgccacat |
200 |
Q |
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| T |
42934608 |
tccaaaagacagttctttcgcatcattgaagaaaccttctttatccaaactcaaagatgatgagataaaacaagtgattcttttccatgctttgccacat |
42934707 |
T |
|
| Q |
201 |
ttctattcacttgctgatttcaaaaaccttagccaaactgcctcaactccaacatttgccggtggtgattacactttgaatttcaccgataattccggaa |
300 |
Q |
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| T |
42934708 |
ttctattcacttgctgatttcaaaaaccttagccaaactgcctcaactccaacatttgccggtggtgattacactttgaatttcaccgataattccggaa |
42934807 |
T |
|
| Q |
301 |
ctgtcaaaattaattcaggatggtcaatcactaaggtgactagtgcagttcatgctactgatcctgttgcaatttatcaagttgataaggttttgcttcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934808 |
ctgtcaaaattaattcaggatggtcaatcactaaggtgactagtgcagttcatgctactgatcctgttgcaatttatcaagttgataaggttttgcttcc |
42934907 |
T |
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| Q |
401 |
tgaggcaatatttggcactgatattccacctgttccggctcctgcacccacaccagaaattgcgcctgcagccgattctccaactgaacaaagtgctgac |
500 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42934908 |
tgaggcaatatttggcactgatattccacctgttctggctcctgcacccacaccagaaattgcgcctgcagccgattctccaactgaacaaagtgctgac |
42935007 |
T |
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| Q |
501 |
agcaaatcgtcttcaccttcatct |
524 |
Q |
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| T |
42935008 |
agcaaatcgtcttcaccttcatct |
42935031 |
T |
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