View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_5 (Length: 528)
Name: NF20433_low_5
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 214 - 507
Target Start/End: Original strand, 47127200 - 47127516
Alignment:
| Q |
214 |
agatgacttgaagcttccggttgaagggcaatgtgatgcatttcgtaagttttccatgttaccgtttacattttcaattatcatcatgtggtaaagtgta |
313 |
Q |
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| T |
47127200 |
agatgacttgaagcttccggttgaagggcaatgtgatgcgtttcgtaagttttccatgttaccgtttacattttcaattatcatcatgtggtaaagtgta |
47127299 |
T |
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| Q |
314 |
taagtacaatgttnnnnnnnagtcgtaatattgtc---tagtattatgtttttgactttatttatgtttaaacttatgtg------------------ta |
392 |
Q |
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| T |
47127300 |
taagtacaatgtt--gggggagtcgtaatattgtctagtagtattatgtttttgactttattcatgtttaaacttatgtgggatctaaagtagcattaaa |
47127397 |
T |
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| Q |
393 |
taagacaatgattctgacgtgttata----actcactcactcgaaagtaattttttacttccagaattgagccaggaggaggctcaagatgtaattttta |
488 |
Q |
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| T |
47127398 |
taagacaatgattctgacgtgttataactcactcactcactcgaaagtaattttttacttccagaattgagccaggaggaggctcaagatgtaattttta |
47127497 |
T |
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| Q |
489 |
agcaggtacatgcatgcaa |
507 |
Q |
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| T |
47127498 |
agcaggtacatgcatgcaa |
47127516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 47126999 - 47127150
Alignment:
| Q |
17 |
cataggcgaccaaatttattaaaagctgggttttcaggtgcaaagttctataatatacatgtgttaattttatattttccaatgtaattctcatctcata |
116 |
Q |
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| T |
47126999 |
cataggcgaccaaatttattaaaagctgggttttcaggtgcaaagttctataatatacatgtgttaattttatattttccaatgtaattctcatctcata |
47127098 |
T |
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| Q |
117 |
tatatttacaaatgtatgtacatatttttaaaattgatacttagtaagttgc |
168 |
Q |
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| T |
47127099 |
tatatttacacatgtatgtacatatttttaaaattgatacttagtgagttgc |
47127150 |
T |
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