View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_6 (Length: 512)
Name: NF20433_low_6
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 42 - 495
Target Start/End: Original strand, 47287061 - 47287514
Alignment:
| Q |
42 |
acgattaggatgtggaaatgtgggattaatgaagatagtatgaagaaaattaagattaatgtgatagagctcattttgggtgggttagaagagaaaagga |
141 |
Q |
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| T |
47287061 |
acgattaggatgtggaaatgtgggattaatgaagatagtatgaagaaaattaggattaatgtgatagagctcattttgggtgggttagaagagaaaagga |
47287160 |
T |
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| Q |
142 |
ggtagagtgttggaattgagtagctagtagttagattaatattttactagtaaagtgttggtgggatttgggtttgtttagtgtacgaaattaatgaaat |
241 |
Q |
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| T |
47287161 |
ggtagagtgttggaattgagtagctagtagttggattaatattttactagtaaagtgttggtgggatttgggtttgtttagtgtacgaaattaatgaaat |
47287260 |
T |
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| Q |
242 |
atatattgatttgaatgataaaatactacatgagatatatatatacatgcatgtggaattggtggtaagtgtctttgaaaggagtgatggattcggcaac |
341 |
Q |
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| T |
47287261 |
atatattgatttgaatgattaaatactacatgagatatatatatacatgcatgtggaattggtggtaagtgtctttgaaaggagtgatggattcggcaac |
47287360 |
T |
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| Q |
342 |
taaaggggcgattttgaaggaatgtagtttaaggccaagaagtatgattcctactaatatgcgacaaatcttgaatatatgttcatgaaagactgagcaa |
441 |
Q |
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| T |
47287361 |
taaaggggcaattttgaaggaatgtagtttaaggccaagaagtatgattcctactaatatgcgacaaatcttgaatacatgttcatgaaagactgagcaa |
47287460 |
T |
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| Q |
442 |
tggactcatgatacagttactaattactataattggagtatcatatggtatagt |
495 |
Q |
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| T |
47287461 |
tggactcatgatacagttactaattactataattggagtatcatatcgtatagt |
47287514 |
T |
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