View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20433_low_8 (Length: 474)
Name: NF20433_low_8
Description: NF20433
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20433_low_8 |
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| [»] scaffold0421 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Original strand, 30033012 - 30033458
Alignment:
| Q |
18 |
caaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatgggga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30033012 |
caaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatgggga |
30033111 |
T |
|
| Q |
118 |
ctcactggctcttgaacttcttcatagaacttgtccattatggtctgatgtgtgtgtg-aagagattttatgacacttcaattagacacttagctacata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
30033112 |
ctcactggctcttgaacttcttcatagaacttgtccattatggtctgatgtgtgtgtgcaagagattttatgacacttcaattagacacttggctacata |
30033211 |
T |
|
| Q |
217 |
aagtctaaggtggcaccataatttatggaggtatgttacttgaaacaaatattttaggcaatatccctcnnnnnnnnnnnnttaggcaataaaagaatgt |
316 |
Q |
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|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30033212 |
aagtctaa-gtggcaccataatttatagaggtatgttacttgaaacaaatattttaggcaatatccctcaaaaaaaaaaaattaggcaataaaagaatgt |
30033310 |
T |
|
| Q |
317 |
tgaaaagagtaagtgtttgagagagcatctaataaaagagtgagtattagatatagtgtttaaaagagaaatttgctagcattctccgtagtaaaaacat |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
30033311 |
tgaaaagagtaagtgtttgagagagcatctaataaaagagtgagtattagagatagtgtttaaaagaaaaatttgctagcattctccgtaataaaaacat |
30033410 |
T |
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| Q |
417 |
aattaattgtgtttctgtgatcataactcaattagaccctatgctact |
464 |
Q |
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||||||||||||||| |||| |||||||||||||||||||| |||||| |
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| T |
30033411 |
aattaattgtgtttccgtgaccataactcaattagaccctaggctact |
30033458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 30229223 - 30229446
Alignment:
| Q |
18 |
caaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatgggga |
117 |
Q |
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|||||||||| | | ||| |||||||||||||| || || |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| |
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| T |
30229223 |
caaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatgagga |
30229322 |
T |
|
| Q |
118 |
ctcactggctcttgaacttcttcatagaacttgtccattatggtctgatgtgtgtgtgaagagattttatg--acacttcaattagacacttagctacat |
215 |
Q |
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||||||||||||||||||||| || |||| |||||||||||| | || |||||| | |||||||| ||| ||||||||| |||||||| |||||| |
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| T |
30229323 |
ctcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgtgag---agagatttgatgtaacacttcaactagacactgagctacca |
30229419 |
T |
|
| Q |
216 |
aaagtctaaggtggcaccataatttat |
242 |
Q |
| |
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|||| | ||||| ||||||| |||||| |
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| T |
30229420 |
aaagcccaaggttgcaccatgatttat |
30229446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 30049112 - 30049264
Alignment:
| Q |
18 |
caaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatgggga |
117 |
Q |
| |
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|||||||||| | | ||| ||||||||||||||||| || |||| |||| ||||||||||||||||||| |||||||||||||| ||||| ||||| ||| |
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| T |
30049112 |
caaaggtatagctaatgaattatcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgagga |
30049211 |
T |
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| Q |
118 |
ctcactggctcttgaacttcttcatagaacttgtccattatggtctgatgtgt |
170 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||| || ||||| |
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| T |
30049212 |
ctcactggctcttgaacttcttcattgaatttgtccattatggtgtggtgtgt |
30049264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 170
Target Start/End: Original strand, 30063453 - 30063605
Alignment:
| Q |
18 |
caaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatgggga |
117 |
Q |
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|
|||||||||| | | ||| ||||||||||||||||| || |||| |||| ||||||||||||||||||| |||||||||||||| ||||| ||||| ||| |
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| T |
30063453 |
caaaggtatagctaatgaattatcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtattgaccatgagga |
30063552 |
T |
|
| Q |
118 |
ctcactggctcttgaacttcttcatagaacttgtccattatggtctgatgtgt |
170 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||| || ||||| |
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| T |
30063553 |
ctcactggctcttgaacttcttcattgaatttgtccattatggtgtggtgtgt |
30063605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 32 - 159
Target Start/End: Complemental strand, 30219838 - 30219711
Alignment:
| Q |
32 |
gtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatggggactcactggctcttg |
131 |
Q |
| |
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|||||| ||||| ||||||||| || |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
30219838 |
gtgagtcatcaattggaatagctaattccagaaacccaaaaacatatgaacatatcacagagctattgaaatattgtccatgtggactcactggctcttg |
30219739 |
T |
|
| Q |
132 |
aacttcttcatagaacttgtccattatg |
159 |
Q |
| |
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||||||||||| ||| |||||||||||| |
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| T |
30219738 |
aacttcttcattgaatttgtccattatg |
30219711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 260
Target Start/End: Original strand, 30049303 - 30049372
Alignment:
| Q |
191 |
acttcaattagacacttagctacataaagtctaaggtggcaccataatttatggaggtatgttacttgaa |
260 |
Q |
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|||||| |||||||||| ||||||||||| ||||||||||||||||||||| | ||||| |||||||| |
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| T |
30049303 |
acttcagttagacactttgctacataaagcataaggtggcaccataatttatacaagtatggtacttgaa |
30049372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 30063644 - 30063695
Alignment:
| Q |
191 |
acttcaattagacacttagctacataaagtctaaggtggcaccataatttat |
242 |
Q |
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|||||| |||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
30063644 |
acttcagttagacactttgctacataaagcataaggtggcaccataatttat |
30063695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 13833 - 13769
Alignment:
| Q |
49 |
atagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatattgtccatg |
113 |
Q |
| |
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||||| || |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
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|
| T |
13833 |
atagctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaatattgtccatg |
13769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 13729 - 13680
Alignment:
| Q |
193 |
ttcaattagacacttagctacataaagtctaaggtggcaccataatttat |
242 |
Q |
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||||||| ||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
13729 |
ttcaatttaacagttagctacataaagtctaaagtggcaccataatttat |
13680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 399
Target Start/End: Complemental strand, 26767812 - 26767760
Alignment:
| Q |
347 |
aataaaagagtgagtattagatatagtgtttaaaagagaaatttgctagcatt |
399 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||| | ||||||||||| |
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| T |
26767812 |
aataaaagagtgagtattagatagagtgttcaaaagaaagtgttgctagcatt |
26767760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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