View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20434_high_1 (Length: 552)
Name: NF20434_high_1
Description: NF20434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20434_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 519; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 16 - 538
Target Start/End: Original strand, 36354263 - 36354785
Alignment:
| Q |
16 |
atttgtttcataatgaaataacctccatatttgaagacatgtattgtatgataacaaacaagattttatataataacgtttttcaaagtatgataactaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354263 |
atttgtttcataatgaaataacctccatatttgaagacatgtattgtatgataacaaacaagattttatataataacgtttttcaaagtatgataactaa |
36354362 |
T |
|
| Q |
116 |
aatgtacatatatattacatacaggaggtagagttgcataatagtaaccaagttcttagagcaaaggtttgttgttgtctctctgtcctgtatatgtaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354363 |
aatgtacatatatattacatacaggaggtagagttgcataatagtaaccaagttcttagagcaaaggtttgttgttgtctctctgtcctgtatatgtaat |
36354462 |
T |
|
| Q |
216 |
gtttgaaatcatcatatcaattactaattatggcattttatttttatttattgctttgtagatatcagaaagtgagcagaggaacaaccataatgttaat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36354463 |
gtttgaaatcatcatatcaattactaattatggcattttatttttatttattgctttgtagatatcagaaagtgagcagaggagcaaccataatgttaat |
36354562 |
T |
|
| Q |
316 |
gtgttgcctgggggcacaagctttgaatgcatgcaacctcagcagcagttcgactctcgtggctacttccaagtgaacgaattacaacccaatgatcagt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354563 |
gtgttgcctgggggcacaagctttgaatgcatgcaacctcagcagcagttcgactctcgtggctacttccaagtgaacgaattacaacccaatgatcagt |
36354662 |
T |
|
| Q |
416 |
atgccaggcaagatcagatgtctcttcaatttgtgtaaggtaattagctccctttctagacccttcacattcattctatatataacttcatgataattgt |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354663 |
atgccaggcaagatcagatgtctcttcaatttgtgtaaggtaattagctccctttctagacccttcacattcattctatatataacttcatgataattgt |
36354762 |
T |
|
| Q |
516 |
tgttaactttaaatgaactaatt |
538 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36354763 |
tgttaactttaaatgaactaatt |
36354785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University