View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20434_low_2 (Length: 411)
Name: NF20434_low_2
Description: NF20434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20434_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 6 - 398
Target Start/End: Complemental strand, 55014979 - 55014587
Alignment:
| Q |
6 |
agaagatacttagatctgtataataatcatatccttgtaattaacctgttaaggattaatgggattaattagcaacaaaatatgctaaaaccccaacaaa |
105 |
Q |
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| T |
55014979 |
agaagatacttagatctgtataataatcatatccttgtaattaatctgttaaggattaatgggattaattagcaacaaaatatgctaaaaccccaacaaa |
55014880 |
T |
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| Q |
106 |
tggcgcattaatatatgtagttggctcggattttctataatcagccctgtcatccacataaacatcatcttctccaggtcctcccacaacagctccaaca |
205 |
Q |
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| T |
55014879 |
tggcgcattaatatatgtagttggctcagattttctataatcagccctgtcatccacataaacatcatcttctccaggtcctcccacaatagctcctaca |
55014780 |
T |
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| Q |
206 |
agaacatttgggttaggatttgttgaattgaagtatattgaaccttccttgcaagcaatctgttgaggatggtccttaatagaaggtagagatgagccac |
305 |
Q |
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| T |
55014779 |
agaacatttgggttaggatttgttgaattgaagtatattgaaccttccttgcaagcaatctgttgaggatggtccttaatagaaggtagagatgagccac |
55014680 |
T |
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| Q |
306 |
ggtgatgaatacgttgtggatagttgttaccataaccaaccatgtaagataaacccaaggggttatcacctaaagtgtaatcaacttgtctct |
398 |
Q |
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| T |
55014679 |
ggtgatgaatacgttgtggatagttgttaccataaccaaccatgtaagataaacccaaggggttatcacctaaaatgtaatcaacttgtctct |
55014587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 137
Target Start/End: Original strand, 12734329 - 12734377
Alignment:
| Q |
89 |
gctaaaaccccaacaaatggcgcattaatatatgtagttggctcggatt |
137 |
Q |
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| T |
12734329 |
gctaaaacaccaacaaaaggagcattgatatatgtagttggctccgatt |
12734377 |
T |
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