View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20434_low_5 (Length: 266)
Name: NF20434_low_5
Description: NF20434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20434_low_5 |
 | |
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| [»] scaffold0190 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 7637083 - 7636856
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7637083 |
tatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
7636984 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgt |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7636983 |
tagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgt |
7636884 |
T |
|
| Q |
218 |
aaaatcaatatgatacaatattgttaag |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7636883 |
aaaatcaatatgatacaatattgttaag |
7636856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 7615269 - 7615061
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |
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|
| T |
7615269 |
tatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttattacggtttttgctggaatagaagaaggtagta |
7615170 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgt |
217 |
Q |
| |
|
| || ||||||||||||||| | | |||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||| | ||| |||||| |
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|
| T |
7615169 |
tagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgt |
7615070 |
T |
|
| Q |
218 |
aaaatcaat |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
7615069 |
aaaatcaat |
7615061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 7628669 - 7628499
Alignment:
| Q |
56 |
tcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggag |
155 |
Q |
| |
|
|||||||||||||||||| || |||||| ||| |||||||| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |
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|
| T |
7628669 |
tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggag |
7628570 |
T |
|
| Q |
156 |
ggaatgggaaatgaccc-caatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaat |
226 |
Q |
| |
|
| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7628569 |
gcaatgggaaatgaccctcaattt-gtggatgttgtgtccaactaatgcaacgtgaggtgtgtaaaatcaat |
7628499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 7606255 - 7606070
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||| || | | |||||||| ||||||||||||||||||| |
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|
| T |
7606255 |
tatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagta |
7606156 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgc |
203 |
Q |
| |
|
||||||||||||| ||||||||| || ||||||||| |||||||| |||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
7606155 |
ttgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaagtgacccacatttcatggatgtcgtgaccaactaatgc |
7606070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 7656237 - 7656424
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | || | ||||| ||||||||||||| ||| | |
|
|
| T |
7656237 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaagaagctagca |
7656336 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgt |
208 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||| |||||||||||| || | ||||||||| | || ||||||||||||||| |
|
|
| T |
7656337 |
ttgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatggatatggt---caactaatgcagcgt |
7656424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 39075160 - 39075095
Alignment:
| Q |
104 |
agaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga |
169 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
39075160 |
agaagaaggtagtgttgatattcaagtttgtcttccttatgatattttggaggctatgggaaatga |
39075095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 39097623 - 39097553
Alignment:
| Q |
102 |
atagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccc |
172 |
Q |
| |
|
|||||||||||||||||||| || ||||||| ||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
39097623 |
atagaagaaggtagtattgatgttgaagtttgcctttcttatgatattttggaggctatgggaaatgaccc |
39097553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 34 - 242
Target Start/End: Original strand, 8913705 - 8913913
Alignment:
| Q |
34 |
gatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagtattgaccttcaagtttg |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
8913705 |
gatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttg |
8913804 |
T |
|
| Q |
134 |
tcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatac |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8913805 |
tcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgtaaaatcaatatgatac |
8913904 |
T |
|
| Q |
234 |
aatattgtt |
242 |
Q |
| |
|
||||||||| |
|
|
| T |
8913905 |
aatattgtt |
8913913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 8936192 - 8936412
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8936192 |
tatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttattacagtatttgccggaatagaagaaggtagta |
8936291 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagcgtgaggtgtgt |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||| | ||| |||||| |
|
|
| T |
8936292 |
ttgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatgaccctcaattcatggatgttgcgtccaactaatgcaacatgatgtgtgt |
8936391 |
T |
|
| Q |
218 |
aaaatcaatatgatacaatat |
238 |
Q |
| |
|
||||||||| || |||||||| |
|
|
| T |
8936392 |
aaaatcaatttggtacaatat |
8936412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 8941837 - 8942024
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| | ||||| |||||||||||||||||||||||| || | | |||||||| ||||||||||||||||||| |
|
|
| T |
8941837 |
tatggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaaggtagta |
8941935 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaatgcagc |
206 |
Q |
| |
|
||||||||||||| ||||||||| ||| ||||||||| |||||||| |||||| |||||||||||| ||| |||| ||||||||| |
|
|
| T |
8941936 |
ttgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaagtgacccacgtttcatggatgtcgtgaccaaataatgcagc |
8942024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 40147465 - 40147640
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||| |||||| ||||||||| |||| | ||||| |||||||| |||| |||||||||||| | |
|
|
| T |
40147465 |
tatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaaggtagca |
40147564 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtc |
193 |
Q |
| |
|
| ||| ||||||| |||||||||| |||||||||||| |||||||||||||| | ||||||||||||||||| |
|
|
| T |
40147565 |
tggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtc |
40147640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 8102474 - 8102323
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
||||| ||| |||||||||||||||| || ||||||||||| |||||| ||||| || |||||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
8102474 |
tatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagta |
8102375 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga |
169 |
Q |
| |
|
| ||||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
8102374 |
tggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
8102323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 6500518 - 6500335
Alignment:
| Q |
18 |
tatggtaatgattttggatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaaggtagta |
117 |
Q |
| |
|
||||||||||||||||||||||| || || |||||| |||| |||| | |||||||| |||| | ||| |||||||| |||| |||| ||||||||| |
|
|
| T |
6500518 |
tatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttgctggaaaagaataaggtagta |
6500419 |
T |
|
| Q |
118 |
ttgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaat |
201 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||||| | |||| | ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6500418 |
tagaccttcaagtttgtcttccttacaagactttggaagcaatgagttatgaccctaatttcatggatgctgtgtccaactaat |
6500335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 4390 - 4292
Alignment:
| Q |
103 |
tagaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatgaccccaatttcatggatgttgtgtccaactaat |
201 |
Q |
| |
|
||||||| ||||| || |||||| |||| ||||||||| |||| |||||||||| ||| ||||||| || | || ||||||||||||||| |||||| |
|
|
| T |
4390 |
tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctgagtttatggatgttgtgtcctactaat |
4292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 156
Target Start/End: Complemental strand, 34174053 - 34174002
Alignment:
| Q |
105 |
gaagaaggtagtattgaccttcaagtttgtcttcctcgtgagattttggagg |
156 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| |||||||||| |
|
|
| T |
34174053 |
gaagaaggtagtattgatattcaagtttgtcttccttatgatattttggagg |
34174002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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