View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20434_low_7 (Length: 215)
Name: NF20434_low_7
Description: NF20434
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20434_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 201
Target Start/End: Complemental strand, 1213320 - 1213131
Alignment:
| Q |
15 |
aaaatcaaccaattgaaaaacttaaagggacaaaactgcattttagccnnnnnnnn--tatttgttatgttttttgtccccacaaaagtataaagattat |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1213320 |
aaaatcaaccaattgaaaaatttaaagggacaaaactgcattttagccaaaaaaaaaatatttgttatgttttttgtccccacaaaagtataaagattat |
1213221 |
T |
|
| Q |
113 |
tttt-gtttccattaaaaattacattttttaatccaaacaaaattatccagcaaataattttagttattgttgttaagttaacttatatt |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1213220 |
tttttgtttccattaaaaattacattttttaatccaaacaaaattatccagcaaataattttagttattgttgttaagttaacttatatt |
1213131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University