View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_high_15 (Length: 419)

Name: NF20435_high_15
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_high_15
NF20435_high_15
[»] chr8 (21 HSPs)
chr8 (19-280)||(45156158-45156419)
chr8 (227-362)||(45155944-45156074)
chr8 (362-419)||(25595487-25595544)
chr8 (365-419)||(45156724-45156778)
chr8 (362-419)||(17895320-17895377)
chr8 (362-419)||(25228152-25228209)
chr8 (201-280)||(39872153-39872232)
chr8 (362-419)||(5540798-5540855)
chr8 (362-415)||(25592302-25592355)
chr8 (365-419)||(20520092-20520146)
chr8 (362-419)||(10663151-10663208)
chr8 (363-419)||(43682601-43682657)
chr8 (362-419)||(18722113-18722169)
chr8 (362-419)||(33878041-33878098)
chr8 (232-276)||(35348676-35348720)
chr8 (251-287)||(39870914-39870950)
chr8 (216-283)||(1797742-1797809)
chr8 (218-277)||(7130139-7130198)
chr8 (230-277)||(7130616-7130663)
chr8 (197-280)||(42432010-42432093)
chr8 (233-277)||(42431681-42431725)
[»] chr4 (21 HSPs)
chr4 (362-419)||(18910744-18910801)
chr4 (362-419)||(40617615-40617672)
chr4 (198-277)||(32304744-32304823)
chr4 (362-419)||(15431304-15431361)
chr4 (362-419)||(15437918-15437975)
chr4 (366-418)||(19861094-19861146)
chr4 (198-277)||(53260181-53260260)
chr4 (362-419)||(3798599-3798656)
chr4 (362-419)||(5721774-5721831)
chr4 (369-418)||(19865453-19865502)
chr4 (362-419)||(37104064-37104121)
chr4 (238-278)||(4675040-4675080)
chr4 (193-277)||(19487526-19487610)
chr4 (362-413)||(9717097-9717148)
chr4 (218-277)||(11660950-11661009)
chr4 (365-419)||(5680609-5680663)
chr4 (362-416)||(33410765-33410819)
chr4 (200-277)||(32303915-32303992)
chr4 (247-276)||(45549363-45549392)
chr4 (362-419)||(53093861-53093917)
chr4 (232-276)||(34981916-34981960)
[»] chr7 (14 HSPs)
chr7 (362-419)||(26556650-26556707)
chr7 (362-418)||(8276153-8276209)
chr7 (19-87)||(42133225-42133293)
chr7 (362-419)||(10431526-10431583)
chr7 (133-181)||(42133367-42133415)
chr7 (362-419)||(45287940-45287997)
chr7 (192-249)||(23284767-23284824)
chr7 (23-80)||(42172022-42172079)
chr7 (362-399)||(45291276-45291313)
chr7 (180-277)||(30859856-30859955)
chr7 (230-276)||(42629201-42629247)
chr7 (204-277)||(16488152-16488225)
chr7 (246-278)||(30665198-30665230)
chr7 (23-79)||(42154176-42154232)
[»] chr6 (11 HSPs)
chr6 (362-419)||(23379616-23379673)
chr6 (362-419)||(23388955-23389012)
chr6 (201-277)||(32879699-32879775)
chr6 (362-419)||(9953176-9953233)
chr6 (362-419)||(5738992-5739049)
chr6 (366-414)||(2371558-2371606)
chr6 (362-419)||(34501554-34501611)
chr6 (200-280)||(26622233-26622313)
chr6 (200-280)||(26728211-26728291)
chr6 (229-276)||(31778837-31778884)
chr6 (231-276)||(30746502-30746547)
[»] chr5 (21 HSPs)
chr5 (362-419)||(21336524-21336581)
chr5 (362-418)||(22937858-22937914)
chr5 (194-277)||(25994907-25994990)
chr5 (362-419)||(21827823-21827880)
chr5 (362-419)||(31863012-31863069)
chr5 (198-277)||(14410734-14410813)
chr5 (198-277)||(25994553-25994632)
chr5 (366-419)||(37214906-37214959)
chr5 (362-419)||(42061626-42061683)
chr5 (362-419)||(14376658-14376714)
chr5 (200-277)||(17854694-17854771)
chr5 (362-419)||(32837223-32837280)
chr5 (194-277)||(26093001-26093084)
chr5 (192-277)||(25868115-25868200)
chr5 (200-277)||(26092580-26092657)
chr5 (366-419)||(28441988-28442041)
chr5 (362-419)||(28788203-28788260)
chr5 (230-277)||(25868504-25868551)
chr5 (244-277)||(6408649-6408682)
chr5 (362-419)||(43490933-43490990)
chr5 (362-394)||(21333508-21333540)
[»] chr3 (18 HSPs)
chr3 (362-419)||(52198445-52198502)
chr3 (362-419)||(6445464-6445521)
chr3 (362-419)||(23299356-23299413)
chr3 (362-419)||(55032740-55032797)
chr3 (362-419)||(6922030-6922087)
chr3 (364-419)||(28265141-28265196)
chr3 (366-419)||(10884158-10884211)
chr3 (362-419)||(16185459-16185516)
chr3 (362-419)||(18645544-18645601)
chr3 (362-419)||(35411817-35411874)
chr3 (362-414)||(17532520-17532572)
chr3 (198-277)||(16280913-16280992)
chr3 (362-419)||(538155-538212)
chr3 (241-277)||(4041044-4041080)
chr3 (248-280)||(45003382-45003414)
chr3 (230-276)||(30478487-30478533)
chr3 (362-400)||(53815131-53815169)
chr3 (379-419)||(22994412-22994452)
[»] scaffold0012 (1 HSPs)
scaffold0012 (183-277)||(36136-36230)
[»] chr2 (15 HSPs)
chr2 (218-280)||(33710898-33710960)
chr2 (362-419)||(25869975-25870032)
chr2 (362-419)||(38006089-38006146)
chr2 (362-419)||(36809238-36809295)
chr2 (362-419)||(10600103-10600160)
chr2 (362-419)||(25821720-25821777)
chr2 (362-419)||(25873343-25873400)
chr2 (362-417)||(26358814-26358869)
chr2 (198-280)||(3816278-3816360)
chr2 (365-419)||(25139846-25139900)
chr2 (362-419)||(29439715-29439772)
chr2 (233-276)||(19004907-19004950)
chr2 (230-276)||(19004816-19004862)
chr2 (362-419)||(16788528-16788585)
chr2 (362-419)||(30275495-30275551)
[»] chr1 (13 HSPs)
chr1 (362-419)||(49499371-49499428)
chr1 (362-419)||(2793439-2793496)
chr1 (199-277)||(32713210-32713288)
chr1 (362-419)||(1951148-1951205)
chr1 (239-277)||(40198814-40198852)
chr1 (216-277)||(11434754-11434815)
chr1 (362-419)||(42021863-42021920)
chr1 (362-418)||(29644111-29644167)
chr1 (192-277)||(7013646-7013731)
chr1 (195-236)||(32306417-32306458)
chr1 (362-419)||(34733067-34733123)
chr1 (296-340)||(11434692-11434736)
chr1 (249-277)||(37920166-37920194)
[»] scaffold0080 (1 HSPs)
scaffold0080 (362-419)||(26385-26442)
[»] scaffold0015 (1 HSPs)
scaffold0015 (362-419)||(197371-197428)
[»] scaffold0005 (1 HSPs)
scaffold0005 (362-419)||(291103-291160)
[»] scaffold0035 (1 HSPs)
scaffold0035 (362-419)||(61737-61794)
[»] scaffold0027 (1 HSPs)
scaffold0027 (195-277)||(49227-49311)
[»] scaffold0270 (3 HSPs)
scaffold0270 (362-396)||(862-896)
scaffold0270 (362-396)||(4222-4256)
scaffold0270 (362-396)||(11352-11386)


Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 45156158 - 45156419
Alignment:
Q  19 ccataagtgttgttaatattcctggtctgaaagcaccgctaacattatgttgtagttgaagtctatcttttgaaatgttacttttacgaataaacaaaca 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45156158 ccataagtgttgttaatattcctggtctgaaagcaccgctaacattatgtggtagttgaagtctatcttttgaaatgttacttttacgaataaacaaaca 45156257  T
Q  119 aaccagggtccaaaaactagtactaaagttccatgacacaaaaaattaaatgttgttttcatttgaaattttgaaaccagcgtgagttaactcgcgtatg 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||    |||    
T  45156258 aaccagggtccaaaaactagtactaaagttccatgacaaaaaaaattaaatgttgttttcatttgaaattttgaaaacagcgtgaattaactcattcatg 45156357  T
Q  219 tgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    |||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||||||||    
T  45156358 tgttaattccagcgtgagataactcaagcagcgtgacttaagtcacgcatgtgtaaaaatta 45156419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 362
Target Start/End: Complemental strand, 45156074 - 45155944
Alignment:
Q  227 tcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaattatgttccgnnnnnnnnacacttacgttggttaactagtgtaggagta 326  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||         ||||||| ||| ||||| ||| | | |||||    
T  45156074 tcagcgtgagttaactcatgcagcgtgatttaagtcacgcatgtgtaaaaattaagttccttattttttacacttatgttagttaattagcgcaagagta 45155975  T
Q  327 ttttggtcatggcttggctgtagggcgcgagcgaaa 362  Q
    |||||||||     ||||||||||||||||||||||    
T  45155974 ttttggtca-----tggctgtagggcgcgagcgaaa 45155944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 25595487 - 25595544
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25595487 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgtgac 25595544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 45156724 - 45156778
Alignment:
Q  365 gtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  45156724 gtgacacgttttaatcaatgtcgaatgaacctcatcctgtgctccaaatcgtgac 45156778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 17895320 - 17895377
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  17895320 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgac 17895377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 25228209 - 25228152
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  25228209 atcgtaacacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgtgac 25228152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 280
Target Start/End: Original strand, 39872153 - 39872232
Alignment:
Q  201 tgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    ||||||||||| ||||  |||||||||| | ||||| ||| ||||||||||||| ||||||||| |||||||||||||||    
T  39872153 tgagttaactcacgtaaatgttaatttctgtgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaatta 39872232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 5540798 - 5540855
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  5540798 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 5540855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 415
Target Start/End: Original strand, 25592302 - 25592355
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcg 415  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  25592302 atcgtaacacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcg 25592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 20520146 - 20520092
Alignment:
Q  365 gtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  20520146 gtgacacgttttaaccaatgtcgaatgaacctcatcctgtgttccaaatcgtgac 20520092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 10663208 - 10663151
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||| ||||| ||||    
T  10663208 atcgtgacacgttttaaccaatgtcgattgaacctcattatgtgctccaaatcatgac 10663151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 43682601 - 43682657
Alignment:
Q  363 tcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||||||||| ||||||||||||||||||||| |||| || |||| |||||    
T  43682601 tcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgttccaaattgtgac 43682657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 18722113 - 18722169
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| | || |||||||||||||||| ||||||| ||||||||||    
T  18722113 atcgtgacacgttttaaccgatatcgaatgaacctcatc-tgtgctccaaatcgtgac 18722169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 33878041 - 33878098
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||| ||||||||  |||| ||||||| |||||    
T  33878041 atcgtgacacgttttaaccaatgtcgaataaacctcattctgtgttctaaattgtgac 33878098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 35348720 - 35348676
Alignment:
Q  232 gtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  35348720 gtgagttaattcatgcagcgtgacttaagtcacgcatgtataaaa 35348676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 39870950 - 39870914
Alignment:
Q  251 gtgatttaagtcacgcatgtgtaaaaattatgttccg 287  Q
    |||||||||||||||||||||||||||||| ||||||    
T  39870950 gtgatttaagtcacgcatgtgtaaaaattaagttccg 39870914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 1797809 - 1797742
Alignment:
Q  216 atgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaattatgt 283  Q
    |||||||||||  || ||||| ||| | | ||||||||| ||||||||| ||||||||||||||||||    
T  1797809 atgtgttaattctagggtgagttaacttacgcagcgtgacttaagtcacacatgtgtaaaaattatgt 1797742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 277
Target Start/End: Complemental strand, 7130198 - 7130139
Alignment:
Q  218 gtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||| ||| ||||||||| ||| ||| ||||||||| ||||||||||||||| ||||||    
T  7130198 gtgttcattccagcgtgagttaactcacgcagcgtgacttaagtcacgcatgtataaaaa 7130139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 7130616 - 7130663
Alignment:
Q  230 gcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||    
T  7130616 gcgtgagttaactcatgcagcgtgacttaagtcacgcatgcgtaaaaa 7130663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 280
Target Start/End: Original strand, 42432010 - 42432093
Alignment:
Q  197 agcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    |||||||||||| || || |||||||||   | ||||||| ||| ||||| ||||||| |||| |||||||| |||||||||||    
T  42432010 agcgtgagttaattcacgcatgtgttaacacctgcgtgagttaactcatgtagcgtgacttaaatcacgcatatgtaaaaatta 42432093  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 42431725 - 42431681
Alignment:
Q  233 tgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||| ||| ||||||||| ||| ||||||||||||||||||||||    
T  42431725 tgagttaactcatgcagcatgacttaagtcacgcatgtgtaaaaa 42431681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 18910801 - 18910744
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18910801 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 18910744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 40617615 - 40617672
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||    
T  40617615 atcgtgactcgttttaatcaatgtcgaatgaacctcatcttgtgttctaaatcgtgac 40617672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 32304744 - 32304823
Alignment:
Q  198 gcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||| |  ||||||||||||||||||||| ||| |||  |||| ||| ||||||||||||||||||||||    
T  32304744 gcgtgagttaactcacacatgtgttaatttcagcgtgagttaactcacccagcatgacttaagtcacgcatgtgtaaaaa 32304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 15431361 - 15431304
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  15431361 atcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgac 15431304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 15437975 - 15437918
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  15437975 atcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgac 15437918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 366 - 418
Target Start/End: Original strand, 19861094 - 19861146
Alignment:
Q  366 tgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtga 418  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  19861094 tgacacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtga 19861146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 53260181 - 53260260
Alignment:
Q  198 gcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||| |||| || ||||||||||||| ||||| | ||| ||| ||||||||| |||||||||| |||||||||||    
T  53260181 gcgtgagttgactcacgcatgtgttaatttcggcgtgggttaactcacgcagcgtgacttaagtcacgtatgtgtaaaaa 53260260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 3798599 - 3798656
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| | || || ||||||||||    
T  3798599 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctttgttccaaatcgtgac 3798656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 5721774 - 5721831
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  5721774 atcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 5721831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 19865453 - 19865502
Alignment:
Q  369 cacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtga 418  Q
    |||||||||| ||||||||||||||||||||| ||||||| |||||||||    
T  19865453 cacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtga 19865502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 37104064 - 37104121
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  37104064 atcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 37104121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 278
Target Start/End: Complemental strand, 4675080 - 4675040
Alignment:
Q  238 taattcatgcagcgtgatttaagtcacgcatgtgtaaaaat 278  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  4675080 taattcatgcagcgtgacttaagtcacgcatgtgtaaaaat 4675040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 193 - 277
Target Start/End: Complemental strand, 19487610 - 19487526
Alignment:
Q  193 aaccagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||| |||||||||||||| || |  |||| |||| ||| |||| ||| ||| ||||||||| ||||||||||||||||||||||    
T  19487610 aacctgcgtgagttaactcacgcagatgtttattttagcatgagttaactcacgcagcgtgagttaagtcacgcatgtgtaaaaa 19487526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 413
Target Start/End: Complemental strand, 9717148 - 9717097
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaat 413  Q
    ||||||||||| ||||| |||||||||| |||||||||| ||||||||||||    
T  9717148 atcgtgacacgatttaaccaatgtcgaacgaacctcatcctgtgctctaaat 9717097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 277
Target Start/End: Original strand, 11660950 - 11661009
Alignment:
Q  218 gtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||||||||||| ||| |||  |||||||| |||||||||||| |||||||||    
T  11660950 gtgttaatttcagcgtgagttaactcacacagcgtgacttaagtcacgcaagtgtaaaaa 11661009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Complemental strand, 5680663 - 5680609
Alignment:
Q  365 gtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||||||| ||||||||||||||||||||  | |||||||||| |||||    
T  5680663 gtgacacgttttaaccaatgtcgaatgaacctcattctatgctctaaattgtgac 5680609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 416
Target Start/End: Original strand, 33410765 - 33410819
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgt 416  Q
    ||||||||||||||||| ||||||||||||||||||| | ||||||  |||||||    
T  33410765 atcgtgacacgttttaaccaatgtcgaatgaacctcaccttgtgcttcaaatcgt 33410819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 32303992 - 32303915
Alignment:
Q  200 gtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||| |  ||||||||||| | ||||||| ||| ||||||  ||||| |||||||||| |||||||||||    
T  32303992 gtgagttaactcacacatgtgttaattcctgcgtgagttaactcatgcgacgtgacttaagtcacgtatgtgtaaaaa 32303915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 276
Target Start/End: Original strand, 45549363 - 45549392
Alignment:
Q  247 cagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    ||||||||||||||||||||||||||||||    
T  45549363 cagcgtgatttaagtcacgcatgtgtaaaa 45549392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 53093917 - 53093861
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||| ||  ||||||||||||||||||||| ||||||| || |||||||    
T  53093917 atcgtgacacgttctac-caatgtcgaatgaacctcatcctgtgctccaattcgtgac 53093861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 34981916 - 34981960
Alignment:
Q  232 gtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    ||||||||| |||||| |||||| ||||||||| |||||||||||    
T  34981916 gtgagataactcatgcggcgtgacttaagtcacacatgtgtaaaa 34981960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 26556707 - 26556650
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  26556707 atcgtgacacgttttaaccaatgtcgaataaacctcatcatgtgctctaaatcgtgac 26556650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 362 - 418
Target Start/End: Complemental strand, 8276209 - 8276153
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtga 418  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  8276209 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatgtgctccaaatcgtga 8276153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 42133225 - 42133293
Alignment:
Q  19 ccataagtgttgttaatattcctggtctgaaagcaccgctaacattatgttgtagttgaagtctatctt 87  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||    
T  42133225 ccataagtgctgttaatattcctggtctgaaagcaccactaacatcatgtagtagtttaagtctatctt 42133293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 10431583 - 10431526
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||    
T  10431583 atcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgctctaaatcgtgac 10431526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 42133367 - 42133415
Alignment:
Q  133 aactagtactaaagttccatgacacaaaaaattaaatgttgttttcatt 181  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  42133367 aactattactaaagttccatgacacaaaatattaaatgttgttttcatt 42133415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 45287940 - 45287997
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| | || || ||||||||||    
T  45287940 atcgtgacacgttttaaccaatgtcgaatgaacctcatcttatgttccaaatcgtgac 45287997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 23284767 - 23284824
Alignment:
Q  192 aaaccagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcag 249  Q
    |||||||||||||||||||| || | ||||||||| ||||||||| ||| ||||||||    
T  23284767 aaaccagcgtgagttaactcacgcaggtgttaattccagcgtgagttaaatcatgcag 23284824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 42172022 - 42172079
Alignment:
Q  23 aagtgttgttaatattcctggtctgaaagcaccgctaacattatgttgtagttgaagt 80  Q
    ||||| |||||||||||||||||| |||||||| |||||||  ||| |||||||||||    
T  42172022 aagtgctgttaatattcctggtctaaaagcaccactaacatcttgtagtagttgaagt 42172079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 45291276 - 45291313
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcat 399  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  45291276 atcgtgacacgttttaaccaatgtcgaatgaacctcat 45291313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 30859955 - 30859856
Alignment:
Q  180 tttgaaattttgaaaccag-cgtgagttaactcgcgtatgtgttaattt-cagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||||||||||  |||||||||||||  | | |||||||||| | | ||||| ||| ||| || |||||| |||||||| |||||||||||||    
T  30859955 tttgaaattttgaaaccaaacgtgagttaactcatgcaggtgttaattttcggtgtgagttaactcacgcggcgtgacttaagtcatgcatgtgtaaaaa 30859856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 42629201 - 42629247
Alignment:
Q  230 gcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    ||||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  42629201 gcgtgagttaactcatgcagcgtgacttaagtcatgcatgtgtaaaa 42629247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 16488152 - 16488225
Alignment:
Q  204 gttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||| || |||||||||   | ||||||  ||| ||||||||||||| ||||||||| ||||||||||||    
T  16488152 gttaactcacgcatgtgttaacacctgcgtgaattaactcatgcagcgtgacttaagtcacacatgtgtaaaaa 16488225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Complemental strand, 30665230 - 30665198
Alignment:
Q  246 gcagcgtgatttaagtcacgcatgtgtaaaaat 278  Q
    ||||||||| |||||||||||||||||||||||    
T  30665230 gcagcgtgacttaagtcacgcatgtgtaaaaat 30665198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 42154176 - 42154232
Alignment:
Q  23 aagtgttgttaatattcctggtctgaaagcaccgctaacattatgttgtagttgaag 79  Q
    ||||| |||||||||||| ||||| |||||||| |||||||  ||| ||||||||||    
T  42154176 aagtgctgttaatattcccggtctaaaagcaccactaacatcttgtagtagttgaag 42154232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 23379616 - 23379673
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  23379616 atcgtgacacgttttaatcaatgtcgagtgaacctcatcatgtgctccaaatcgtgac 23379673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 23388955 - 23389012
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  23388955 atcgtgacacgttttaatcaatgtcgagtgaacctcatcatgtgctccaaatcgtgac 23389012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 201 - 277
Target Start/End: Complemental strand, 32879775 - 32879699
Alignment:
Q  201 tgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||| || ||||||||||||||||||||| ||| ||| ||||||||| |||||||||||| |||||||||    
T  32879775 tgagttaactcacgcatgtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcaagtgtaaaaa 32879699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 9953233 - 9953176
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||| ||||||||||    
T  9953233 atcgtgacacgttttaaccaatgtcgaatgaacctcattctgtgctccaaatcgtgac 9953176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 5738992 - 5739049
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||| |||||||| ||||||||||||||||||||| | ||||| ||||||||||    
T  5738992 atcgtgacgcgttttaaccaatgtcgaatgaacctcatcctttgctccaaatcgtgac 5739049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 414
Target Start/End: Complemental strand, 2371606 - 2371558
Alignment:
Q  366 tgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatc 414  Q
    ||||||||||||| |||||||||||||||||| || |||||||||||||    
T  2371606 tgacacgttttaaccaatgtcgaatgaacctcgtcctgtgctctaaatc 2371558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 34501611 - 34501554
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||   |||||||||||||||||||| | ||||| ||||||||||    
T  34501611 atcgtgacacgttttagctaatgtcgaatgaacctcatcctatgctccaaatcgtgac 34501554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 26622233 - 26622313
Alignment:
Q  200 gtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    |||||||||||| || | ||||||||||||||| ||| ||| | | ||||| ||||||| ||||| |||||||||| ||||    
T  26622233 gtgagttaactcacgcaggtgttaatttcagcgcgagttaacttacgcagcatgatttatgtcacacatgtgtaaagatta 26622313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 280
Target Start/End: Original strand, 26728211 - 26728291
Alignment:
Q  200 gtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    |||||||||||| || | ||||||||||||||| ||| ||| | | ||||| ||||||| ||||| |||||||||| ||||    
T  26728211 gtgagttaactcacgcaggtgttaatttcagcgcgagttaacttacgcagcatgatttatgtcacacatgtgtaaagatta 26728291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 31778884 - 31778837
Alignment:
Q  229 agcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    |||||||| ||| |||||| |||||| |||||||||||||||||||||    
T  31778884 agcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgtaaaa 31778837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 30746502 - 30746547
Alignment:
Q  231 cgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    |||||| ||| |||| |||||||| |||||||||||||||||||||    
T  30746502 cgtgagttaaatcatacagcgtgacttaagtcacgcatgtgtaaaa 30746547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 21336524 - 21336581
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  21336524 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgctctaaatcgtgac 21336581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 22937858 - 22937914
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtga 418  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  22937858 atcgtgacacgttttaatcaatgtcgaatgaacctcatcttgtgctccaaatcgtga 22937914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 25994907 - 25994990
Alignment:
Q  194 accagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||||||| || | |||||||||   ||||||| ||| ||||||||||||| ||||||||||||||||||||||    
T  25994907 accagcgtgagttaactcacgcaagtgttaattctcgcgtgagttaactcatgcagcgtgacttaagtcacgcatgtgtaaaaa 25994990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 21827823 - 21827880
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||    
T  21827823 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgttctaaatcgtgac 21827880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 31863069 - 31863012
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  31863069 atcgtgacacgatttaaacaatgtcgaatgaacttcatcatgtgctctaaatcgtgac 31863012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 14410734 - 14410813
Alignment:
Q  198 gcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||| || | |||||||||||||| |||| ||| ||| ||||||||| ||||||||| ||||||||||||    
T  14410734 gcgtgagttaactcacgcacgtgttaatttcagcatgagttaactcacgcagcgtgacttaagtcacacatgtgtaaaaa 14410813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 277
Target Start/End: Complemental strand, 25994632 - 25994553
Alignment:
Q  198 gcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||| || | ||||||||||| ||||||| ||| ||| || |||||| ||||||||||||||||||||||    
T  25994632 gcgtgagttaactcacgcaggtgttaatttctgcgtgagttaactcaggcggcgtgacttaagtcacgcatgtgtaaaaa 25994553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 37214959 - 37214906
Alignment:
Q  366 tgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  37214959 tgacacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgac 37214906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 42061683 - 42061626
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||  ||||||||||    
T  42061683 atcgtgacacgatttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgac 42061626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 14376658 - 14376714
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  14376658 atcgtgacacgttttaa-caatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 14376714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 277
Target Start/End: Original strand, 17854694 - 17854771
Alignment:
Q  200 gtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||| |  | ||||||||||||||||||| ||| ||| |||| ||||  |||||||||||||||||||||    
T  17854694 gtgagttaactcacacaagtgttaatttcagcgtgagttaactcacgcagtgtgacctaagtcacgcatgtgtaaaaa 17854771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 32837280 - 32837223
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| |||||||||||||| |||||| | ||||| ||||||||||    
T  32837280 atcgtgacacgttttaaccaatgtcgaatgaaactcatcctatgctccaaatcgtgac 32837223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 277
Target Start/End: Original strand, 26093001 - 26093084
Alignment:
Q  194 accagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||| ||||||| || | ||||||||| | |||| || |||||||| | |||||| ||||||||| ||||||||||||    
T  26093001 accagcgtgacttaactcacgcacgtgttaattcctgcgtaagttaattcatacggcgtgacttaagtcacacatgtgtaaaaa 26093084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 277
Target Start/End: Complemental strand, 25868200 - 25868115
Alignment:
Q  192 aaaccagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||| ||||||||| || | |||||||     ||||||| ||| ||||||||||||| ||||||||| ||||||||||||    
T  25868200 aaaccagcgttagttaactcacgcacgtgttaacacatgcgtgagttaactcatgcagcgtgacttaagtcacacatgtgtaaaaa 25868115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 277
Target Start/End: Complemental strand, 26092657 - 26092580
Alignment:
Q  200 gtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||| || | ||||||||||| ||||||| ||| ||||||  | ||| |||||||||||| |||||||||    
T  26092657 gtgagttaactctcgcaggtgttaatttctgcgtgagttaactcatgcgacatgacttaagtcacgcaagtgtaaaaa 26092580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 419
Target Start/End: Original strand, 28441988 - 28442041
Alignment:
Q  366 tgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||  |||||| || ||||||||||| ||||||||||||||||||    
T  28441988 tgacacgttttagccaatgttgagtgaacctcatcctgtgctctaaatcgtgac 28442041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 28788203 - 28788260
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||| ||||||||| | || || ||||||||||    
T  28788203 atcgtgacacgttttaaccaatgtcgaataaacctcatcctatgttccaaatcgtgac 28788260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 25868504 - 25868551
Alignment:
Q  230 gcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||| ||| | ||||||||||| ||||||||||||||||||||||    
T  25868504 gcgtgagttaacttatgcagcgtgacttaagtcacgcatgtgtaaaaa 25868551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Complemental strand, 6408682 - 6408649
Alignment:
Q  244 atgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||| ||||||||||||||||||||||    
T  6408682 atgcagcgtgacttaagtcacgcatgtgtaaaaa 6408649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 43490990 - 43490933
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||| ||||||||| ||||| | ||||||||||||| |||||||  |||||||||    
T  43490990 atcgtgatacgttttaaccaatgccaaatgaacctcatcctgtgctcctaatcgtgac 43490933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 394
Target Start/End: Original strand, 21333508 - 21333540
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaac 394  Q
    ||||||||||||||||| |||||||||||||||    
T  21333508 atcgtgacacgttttaaccaatgtcgaatgaac 21333540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 52198502 - 52198445
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  52198502 atcgtgacacattttaaccaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 52198445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 6445464 - 6445521
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  6445464 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgac 6445521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 23299356 - 23299413
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||    
T  23299356 atcgtgacacgttttaatcaatgtcgaatgaacctcatcttgtgctccaaattgtgac 23299413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 55032740 - 55032797
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||    
T  55032740 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatgtgcttcaaatcgtgac 55032797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 6922087 - 6922030
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||| | |||||| |||||||||||||||||||||| ||||||||||    
T  6922087 atcgtgacacgttttcaccaatgttgaatgaacctcatcatgtgctccaaatcgtgac 6922030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Complemental strand, 28265196 - 28265141
Alignment:
Q  364 cgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||    
T  28265196 cgtgacacgttttaaccaatgtcgaatgaacttcatcatgtgcttcaaatcgtgac 28265141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 366 - 419
Target Start/End: Complemental strand, 10884211 - 10884158
Alignment:
Q  366 tgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||||||||||||||||| ||| ||||||  ||||||||||    
T  10884211 tgacacgttttaatcaatgtcgaatgaacctaatcctgtgcttcaaatcgtgac 10884158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 16185459 - 16185516
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||  ||||||||| ||||||||||| ||||||||||| ||||||    
T  16185459 atcgtgacacgttttagccaatgtcgagtgaacctcatcctgtgctctaaaacgtgac 16185516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 18645544 - 18645601
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  18645544 atcgtgacacgatttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 18645601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 35411874 - 35411817
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||| ||||||||||||||||||||| |||| || ||||||||||    
T  35411874 atcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgttccaaatcgtgac 35411817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 414
Target Start/End: Original strand, 17532520 - 17532572
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatc 414  Q
    ||||||||||||||||| |||| |||||||||||||||| ||||||| |||||    
T  17532520 atcgtgacacgttttaaccaatatcgaatgaacctcatcctgtgctcaaaatc 17532572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 277
Target Start/End: Original strand, 16280913 - 16280992
Alignment:
Q  198 gcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||| |  | ||||||||||| ||||||| ||| ||| || |||||| |||||||||||| |||||||||    
T  16280913 gcgtgagttaactcacccaagtgttaatttcggcgtgagttaactcacgcggcgtgacttaagtcacgcaagtgtaaaaa 16280992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 538212 - 538155
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||| ||||||||||| ||||||||||||||| ||||  ||||||| ||||||||||    
T  538212 atcgtaacacgttttaaccaatgtcgaatgaacttcattctgtgctccaaatcgtgac 538155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 4041044 - 4041080
Alignment:
Q  241 ttcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||| ||||||||||||||||||||||    
T  4041044 ttcatgcagcgtgacttaagtcacgcatgtgtaaaaa 4041080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 45003414 - 45003382
Alignment:
Q  248 agcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    |||||||||||||||||||||||||||||||||    
T  45003414 agcgtgatttaagtcacgcatgtgtaaaaatta 45003382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 30478533 - 30478487
Alignment:
Q  230 gcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    ||||||| ||| |||||| |||| |||||||||||||||||||||||    
T  30478533 gcgtgagttaactcatgcggcgttatttaagtcacgcatgtgtaaaa 30478487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 53815169 - 53815131
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatc 400  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  53815169 atcgtgacacattttaaccaatgtcgaatgaacctcatc 53815131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 22994412 - 22994452
Alignment:
Q  379 tcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||| ||||||| |||||||| ||||||||||    
T  22994412 tcaatgtcgaatgcacctcattatgtgctccaaatcgtgac 22994452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 277
Target Start/End: Original strand, 36136 - 36230
Alignment:
Q  183 gaaattttgaaaccagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||||||||| ||||||||||| || | ||||||||| ||||||||| ||  ||| ||||||||| |||||||||| | |||||||||    
T  36136 gaaattttgaaaccagcatgagttaactcacgcacgtgttaattccagcgtgagttagctcacgcagcgtgacttaagtcacgtaagtgtaaaaa 36230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 33710960 - 33710898
Alignment:
Q  218 gtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    ||||||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||    
T  33710960 gtgttaatttcagcgtgagttaactcacgcagcgtgacttaagtcacgcatgtgtaaaaatta 33710898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 25870032 - 25869975
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  25870032 atcgtgacacgttttaatcaatgtcgaatgaacttcatcctgtgctccaaatcgtgac 25869975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 38006089 - 38006146
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||    
T  38006089 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgctccaaatcgtgac 38006146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 36809238 - 36809295
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||||    
T  36809238 atcgtgacacgttttaaccaatgtcgaatgaatctcatcctgtgctccaaatcgtgac 36809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 10600160 - 10600103
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| | || || ||||||||||    
T  10600160 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctatgttccaaatcgtgac 10600103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 25821720 - 25821777
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||| ||||||||||||||||||||| |||| || ||||||||||    
T  25821720 atcgtgacacattttaaccaatgtcgaatgaacctcatcctgtgttccaaatcgtgac 25821777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 25873400 - 25873343
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||| ||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  25873400 atcgtgacacggtttaaccaatgtcgaatgaacctcatcctgtgctccaaatcatgac 25873343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 362 - 417
Target Start/End: Complemental strand, 26358869 - 26358814
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtg 417  Q
    ||||||||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  26358869 atcgtgacacgatttaaccaatgccgaatgaacctcatcctgtgctccaaatcgtg 26358814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Original strand, 3816278 - 3816360
Alignment:
Q  198 gcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaatta 280  Q
    |||||||||||||  || | ||||||||| || |||||| ||| ||| ||||||||| ||||||||| ||| |||||||||||    
T  3816278 gcgtgagttaacttacgcaggtgttaattacaacgtgagttaactcacgcagcgtgacttaagtcacacatatgtaaaaatta 3816360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 419
Target Start/End: Original strand, 25139846 - 25139900
Alignment:
Q  365 gtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||  |||||| ||||||||||||| ||||||| ||||||||||    
T  25139846 gtgacacgttttaactaatgtctaatgaacctcatcttgtgctccaaatcgtgac 25139900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 29439772 - 29439715
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| |||| |||||||||| ||||| ||||||  ||||||||||    
T  29439772 atcgtgacacgttttaaccaatatcgaatgaacttcatcctgtgcttcaaatcgtgac 29439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 19004907 - 19004950
Alignment:
Q  233 tgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||    
T  19004907 tgagttaactcatgcggcgtgatttaagtcacgcatgtgtaaaa 19004950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 19004862 - 19004816
Alignment:
Q  230 gcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaa 276  Q
    ||||||| ||| |||||| |||||| |||||||||||||||||||||    
T  19004862 gcgtgagttaactcatgcggcgtgacttaagtcacgcatgtgtaaaa 19004816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 16788585 - 16788528
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| |||| |||||| |||  |||| || |||||||||||||||    
T  16788585 atcgtgacacgttttaaccaatatcgaataaactccatcctgcgctctaaatcgtgac 16788528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 30275495 - 30275551
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| |||||||||||||| |||||| |  |||| ||||||||||    
T  30275495 atcgtgacacgttttaaccaatgtcgaatgaa-ctcatcctacgctccaaatcgtgac 30275551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 49499371 - 49499428
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||    
T  49499371 atcgtgacacgttttaaccaatgtcgaatgaacctcatcatatgctccaaatcgtgac 49499428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 2793496 - 2793439
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  2793496 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 2793439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 199 - 277
Target Start/End: Complemental strand, 32713288 - 32713210
Alignment:
Q  199 cgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||||| || | |||||||||| |||||||| ||| ||| ||||||||| |||||||||| |||||| ||||    
T  32713288 cgtgagttaactcacgcaagtgttaattttagcgtgagttaactcacgcagcgtgacttaagtcacgtatgtgttaaaa 32713210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 1951148 - 1951205
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| || |||||||||||||||||| | ||||| ||||||||||    
T  1951148 atcgtgacacgttttaaccactgtcgaatgaacctcatcctatgctccaaatcgtgac 1951205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 277
Target Start/End: Complemental strand, 40198852 - 40198814
Alignment:
Q  239 aattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  40198852 aattcatgcagcgtgacttaagtcacgcatgtgtaaaaa 40198814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 277
Target Start/End: Complemental strand, 11434815 - 11434754
Alignment:
Q  216 atgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||| ||||||||| ||| ||| |||| |||| |||||||| |||||||||||||    
T  11434815 atgtgttaattccagcgtgagttaactcacgcagtgtgacttaagtcaggcatgtgtaaaaa 11434754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 42021920 - 42021863
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||| ||||||||||| |||||||||||||||||||||   ||||| ||||||||||    
T  42021920 atcgtaacacgttttaaccaatgtcgaatgaacctcatccgatgctccaaatcgtgac 42021863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 29644111 - 29644167
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtga 418  Q
    ||||| ||||||||||  |||||||||||||| |||||| ||||||| |||||||||    
T  29644111 atcgtaacacgttttagccaatgtcgaatgaatctcatcctgtgctccaaatcgtga 29644167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 7013646 - 7013731
Alignment:
Q  192 aaaccagcgtgagttaactcgcgtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||| |||||||||||| || || | ||||||||| |  |||||| ||| | ||||  |||||||||||| |||||||||||||||    
T  7013646 aaactagcgtgagttaattcacgcaggtgttaattcctacgtgagttaacttatgcgacgtgatttaagttacgcatgtgtaaaaa 7013731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 32306458 - 32306417
Alignment:
Q  195 ccagcgtgagttaactcgcgtatgtgttaatttcagcgtgag 236  Q
    ||||||||||||||||| || | |||||||||||||||||||    
T  32306458 ccagcgtgagttaactcacgcaagtgttaatttcagcgtgag 32306417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Original strand, 34733067 - 34733123
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||  ||||||||||||||||||||| ||||||| ||||| ||||    
T  34733067 atcgtgacacattttac-caatgtcgaatgaacctcatcctgtgctccaaatcctgac 34733123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 11434736 - 11434692
Alignment:
Q  296 acacttacgttggttaactagtgtaggagtattttggtcatggct 340  Q
    |||||| |||| ||||||||| | |||||||||||||||||||||    
T  11434736 acacttgcgttagttaactagcgcaggagtattttggtcatggct 11434692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 37920166 - 37920194
Alignment:
Q  249 gcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    |||||||||||||||||||||||||||||    
T  37920166 gcgtgatttaagtcacgcatgtgtaaaaa 37920194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 26442 - 26385
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||  ||||||||||    
T  26442 atcgtgacacgttttaaccaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 26385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 197428 - 197371
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||  ||||||||||    
T  197428 atcgtgacacattttaatcaatgtcgaatgaacctcatcctgtgcttcaaatcgtgac 197371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 291160 - 291103
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||||||    
T  291160 atcgtgacacgttttaaccaatgtcgaatgaaccttatcctgtgctccaaatcgtgac 291103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 362 - 419
Target Start/End: Complemental strand, 61794 - 61737
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacctcatcatgtgctctaaatcgtgac 419  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |  ||||||||||    
T  61794 atcgtgacacgttttaaccaatgtcgaatgaacctcatcttgtgtttcaaatcgtgac 61737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 277
Target Start/End: Complemental strand, 49311 - 49227
Alignment:
Q  195 ccagcgtgagttaactcgc--gtatgtgttaatttcagcgtgagataattcatgcagcgtgatttaagtcacgcatgtgtaaaaa 277  Q
    ||||||||||||||||| |  | | ||||||||| | | ||||| ||| |||||| ||||||||||||||| |||||||||||||    
T  49311 ccagcgtgagttaactctcacgcaagtgttaattcctgtgtgagttaactcatgcggcgtgatttaagtcatgcatgtgtaaaaa 49227  T

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Target: scaffold0270 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Original strand, 862 - 896
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacct 396  Q
    ||||||||||||||||| |||||||||||||||||    
T  862 atcgtgacacgttttaaccaatgtcgaatgaacct 896  T

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Target: scaffold0270; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Original strand, 4222 - 4256
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacct 396  Q
    ||||||||||||||||| |||||||||||||||||    
T  4222 atcgtgacacgttttaaccaatgtcgaatgaacct 4256  T

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Target: scaffold0270; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 396
Target Start/End: Original strand, 11352 - 11386
Alignment:
Q  362 atcgtgacacgttttaatcaatgtcgaatgaacct 396  Q
    ||||||||||||||||| |||||||||||||||||    
T  11352 atcgtgacacgttttaaccaatgtcgaatgaacct 11386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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