View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_high_20 (Length: 395)
Name: NF20435_high_20
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 31776342 - 31776720
Alignment:
| Q |
1 |
agattgattctgaaagcacatatgttaaggaataaaacatccaagacaggccttgatgtgacggatcataaatgcttggcaactgctgcaagtagagata |
100 |
Q |
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| T |
31776342 |
agattgattctgaaagcacatatgttaaggaataaaacatccaagacaggccttgatgtgacggatcataaatgcttggcaactgctgcaagtagagata |
31776441 |
T |
|
| Q |
101 |
aatggatctatcattacaagcttaagtatcttaattttagagacttaaatttgatgcacaagaaagtcatggtgacatgattggcttcaattcacatgcc |
200 |
Q |
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| T |
31776442 |
aatggatctatcattacaagcttaagtatcttaattttagagacttaaattcgatgcacaagaaagtcatggtgacatgattggcttcaattcacatgtc |
31776541 |
T |
|
| Q |
201 |
aacagaagtgtgtgaaatattgtttacaagcaaagcaacatacatgaaacttcagcaaagatgcagaaagcaaaaccaaatcccaacttgaggtggtgtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
31776542 |
aacagaagtgtgtgaaatattgtttacaagcaaagcaacatacatgaaacttcagcaaagatgcaggaagcaaaaccaaatcccaacatgaggtggtgtt |
31776641 |
T |
|
| Q |
301 |
cactgatgtgtgtcccctagaatttagagccatgtgcagttgctcctttcgcacaccctctagacagccactgaaaaag |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31776642 |
cactgatgtgtgtcccctagaatttagagccatgtgcagttgctcctttcgcacaccctctagacggccactgaaaaag |
31776720 |
T |
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