View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_high_25 (Length: 351)

Name: NF20435_high_25
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_high_25
NF20435_high_25
[»] chr4 (26 HSPs)
chr4 (146-335)||(47156634-47156823)
chr4 (145-257)||(47157315-47157427)
chr4 (150-272)||(18363574-18363696)
chr4 (139-193)||(34450809-34450863)
chr4 (150-272)||(36599232-36599354)
chr4 (145-191)||(52129421-52129467)
chr4 (145-213)||(34451417-34451485)
chr4 (65-140)||(26067288-26067363)
chr4 (143-277)||(24666768-24666902)
chr4 (144-189)||(26764301-26764346)
chr4 (143-187)||(14527582-14527626)
chr4 (145-189)||(36248399-36248443)
chr4 (65-125)||(46250823-46250883)
chr4 (143-194)||(13925648-13925699)
chr4 (157-220)||(51386468-51386531)
chr4 (145-187)||(24666129-24666171)
chr4 (151-189)||(26354236-26354274)
chr4 (144-182)||(34941501-34941539)
chr4 (150-184)||(36253492-36253526)
chr4 (65-126)||(24916072-24916133)
chr4 (75-144)||(28715371-28715440)
chr4 (84-144)||(4608653-4608713)
chr4 (145-189)||(6057003-6057047)
chr4 (144-184)||(6258155-6258195)
chr4 (145-189)||(13924793-13924837)
chr4 (145-189)||(42792775-42792819)
[»] chr1 (22 HSPs)
chr1 (145-232)||(16449555-16449642)
chr1 (145-232)||(16459129-16459216)
chr1 (144-277)||(26240787-26240920)
chr1 (144-184)||(27745555-27745595)
chr1 (144-203)||(21257907-21257966)
chr1 (71-141)||(35112429-35112499)
chr1 (157-217)||(12449288-12449348)
chr1 (143-187)||(24848432-24848476)
chr1 (65-144)||(9848388-9848467)
chr1 (144-187)||(26240113-26240156)
chr1 (151-182)||(42345867-42345898)
chr1 (141-183)||(2261553-2261595)
chr1 (145-187)||(24847783-24847825)
chr1 (72-126)||(43115248-43115302)
chr1 (150-186)||(2260858-2260894)
chr1 (150-186)||(14166914-14166950)
chr1 (145-189)||(27746162-27746206)
chr1 (145-189)||(31109239-31109283)
chr1 (145-189)||(31116688-31116732)
chr1 (65-141)||(31239101-31239177)
chr1 (145-201)||(33357721-33357777)
chr1 (145-189)||(50657145-50657189)
[»] chr2 (17 HSPs)
chr2 (144-222)||(127706-127784)
chr2 (145-293)||(127033-127183)
chr2 (144-187)||(20606927-20606970)
chr2 (146-222)||(38138698-38138774)
chr2 (65-139)||(12599561-12599635)
chr2 (146-184)||(44297423-44297461)
chr2 (145-190)||(18537496-18537541)
chr2 (145-194)||(44296860-44296909)
chr2 (65-141)||(3752432-3752508)
chr2 (145-189)||(30201992-30202036)
chr2 (65-144)||(38502282-38502362)
chr2 (145-192)||(44986812-44986859)
chr2 (65-122)||(20170515-20170572)
chr2 (145-189)||(1141300-1141344)
chr2 (145-189)||(7754971-7755015)
chr2 (150-222)||(21947759-21947831)
chr2 (150-186)||(23458631-23458667)
[»] chr8 (24 HSPs)
chr8 (143-232)||(202575-202664)
chr8 (143-232)||(317412-317501)
chr8 (144-221)||(26847096-26847173)
chr8 (137-184)||(42094753-42094800)
chr8 (138-189)||(42664001-42664052)
chr8 (145-187)||(36182127-36182169)
chr8 (144-189)||(9929199-9929244)
chr8 (144-189)||(22632972-22633017)
chr8 (143-192)||(42094007-42094056)
chr8 (150-230)||(22632327-22632407)
chr8 (147-187)||(36180689-36180729)
chr8 (72-131)||(15172362-15172421)
chr8 (145-187)||(4402293-4402335)
chr8 (66-144)||(11420375-11420453)
chr8 (155-189)||(16718381-16718415)
chr8 (145-187)||(16911052-16911094)
chr8 (65-123)||(34142882-34142940)
chr8 (84-141)||(2442283-2442340)
chr8 (145-186)||(19220913-19220954)
chr8 (145-189)||(5434032-5434076)
chr8 (145-189)||(27243446-27243490)
chr8 (145-189)||(27255021-27255065)
chr8 (150-182)||(33321502-33321534)
chr8 (144-184)||(44656326-44656366)
[»] chr7 (30 HSPs)
chr7 (144-293)||(46491588-46491737)
chr7 (145-189)||(42818557-42818601)
chr7 (65-144)||(10039910-10039989)
chr7 (150-231)||(10590303-10590384)
chr7 (145-187)||(3314955-3314997)
chr7 (143-189)||(7329072-7329118)
chr7 (145-183)||(30581276-30581314)
chr7 (71-141)||(32310802-32310872)
chr7 (149-187)||(36611555-36611593)
chr7 (145-186)||(3315470-3315511)
chr7 (145-189)||(767136-767180)
chr7 (145-189)||(34807928-34807972)
chr7 (145-189)||(41965781-41965825)
chr7 (144-187)||(2403447-2403490)
chr7 (144-187)||(44120357-44120400)
chr7 (150-217)||(44876910-44876977)
chr7 (150-220)||(10590941-10591011)
chr7 (145-187)||(17114145-17114187)
chr7 (71-141)||(38237444-38237514)
chr7 (150-187)||(1511852-1511889)
chr7 (65-126)||(4094251-4094312)
chr7 (72-117)||(6099958-6100003)
chr7 (144-189)||(24874582-24874627)
chr7 (144-189)||(28007156-28007201)
chr7 (145-222)||(36611465-36611542)
chr7 (144-189)||(42817797-42817842)
chr7 (157-189)||(767970-768002)
chr7 (65-141)||(14774406-14774482)
chr7 (65-141)||(15224859-15224935)
chr7 (65-93)||(24862546-24862574)
[»] chr5 (17 HSPs)
chr5 (143-222)||(2029018-2029097)
chr5 (144-231)||(39936254-39936340)
chr5 (144-189)||(39466884-39466929)
chr5 (139-189)||(35524116-35524166)
chr5 (145-222)||(24565573-24565650)
chr5 (145-222)||(24606609-24606686)
chr5 (150-186)||(8743108-8743144)
chr5 (145-220)||(23253458-23253534)
chr5 (145-189)||(39937910-39937954)
chr5 (145-189)||(40372164-40372208)
chr5 (71-126)||(4353017-4353072)
chr5 (145-184)||(27345928-27345967)
chr5 (146-189)||(39467643-39467686)
chr5 (144-258)||(2028336-2028450)
chr5 (145-187)||(38129126-38129168)
chr5 (79-144)||(35695295-35695360)
chr5 (65-125)||(42638898-42638957)
[»] chr3 (24 HSPs)
chr3 (66-141)||(8231641-8231716)
chr3 (150-232)||(2226661-2226743)
chr3 (144-269)||(53242665-53242791)
chr3 (147-188)||(29516554-29516595)
chr3 (143-188)||(53346501-53346546)
chr3 (144-188)||(54753576-54753620)
chr3 (145-187)||(18745376-18745418)
chr3 (145-187)||(20807937-20807979)
chr3 (145-187)||(47571945-47571987)
chr3 (150-187)||(33762694-33762731)
chr3 (150-187)||(54308458-54308495)
chr3 (157-189)||(9830584-9830616)
chr3 (145-189)||(15287567-15287611)
chr3 (144-200)||(53344734-53344790)
chr3 (145-184)||(55336-55375)
chr3 (145-224)||(17353802-17353881)
chr3 (145-192)||(47571196-47571243)
chr3 (145-192)||(49349676-49349723)
chr3 (144-187)||(52924439-52924482)
chr3 (145-187)||(4706962-4707004)
chr3 (145-187)||(20808613-20808655)
chr3 (145-187)||(49350276-49350318)
chr3 (156-205)||(14746890-14746939)
chr3 (145-189)||(31629341-31629385)
[»] chr6 (14 HSPs)
chr6 (143-189)||(2138475-2138521)
chr6 (65-131)||(13708001-13708067)
chr6 (65-131)||(13710089-13710155)
chr6 (65-131)||(13712177-13712243)
chr6 (65-131)||(13715492-13715558)
chr6 (65-131)||(13717580-13717646)
chr6 (144-188)||(5312240-5312284)
chr6 (144-187)||(13084885-13084928)
chr6 (145-187)||(2741405-2741447)
chr6 (65-141)||(4577967-4578044)
chr6 (65-141)||(16436872-16436948)
chr6 (145-189)||(16718998-16719042)
chr6 (145-181)||(19405085-19405121)
chr6 (65-141)||(29178431-29178507)
[»] scaffold0627 (1 HSPs)
scaffold0627 (151-189)||(6470-6508)
[»] scaffold0002 (1 HSPs)
scaffold0002 (147-183)||(97206-97242)


Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 146 - 335
Target Start/End: Original strand, 47156634 - 47156823
Alignment:
Q  146 gtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaattaaa 245  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47156634 gtgaattctagggtgagggttcaattaagtccctcatcggtggagcacccaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaattaaa 47156733  T
Q  246 attagaacatttatacattttcacatagaatcctacccctatctcttttccttttacattctttcaaattcatcatgaatatgttagaac 335  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47156734 attagaacatttatacattttcacatagaatcctacccatatctcttttccttttacattctttcaaattcatcatgaatatgttagaac 47156823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 47157427 - 47157315
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaattaa 244  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||| ||||||||||| ||||||||||  ||||||||  ||||  ||    
T  47157427 ggtgaattctagggtgagggttcaattaaatccctcaccggtggagcacctaaaaaataccatttgattgaatcaatgattcagattgatcgaaaacaaa 47157328  T
Q  245 aattagaacattt 257  Q
    ||| |||||||||    
T  47157327 aatgagaacattt 47157315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 18363696 - 18363574
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaattaaaatta 249  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||  | |||| |||||| |||| |||||||| |  ||||| ||| ||||| ||| | |    
T  18363696 attctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattga 18363597  T
Q  250 gaacatttatacattttcacata 272  Q
    |||||| || ||||||| |||||    
T  18363596 gaacatctagacattttaacata 18363574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Original strand, 34450809 - 34450863
Alignment:
Q  139 tttgaaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac 193  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34450809 tttgtaggtgaattctagggtgagggatcaattaagtccctcaccggtggagcac 34450863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 272
Target Start/End: Original strand, 36599232 - 36599354
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaattaaaatta 249  Q
    |||||| ||||||||||||||||||| ||||||||||||| |||  | |||| |||||| |||| |||||||| |  ||||| ||| ||||| ||| | |    
T  36599232 attctagggtgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataaaattga 36599331  T
Q  250 gaacatttatacattttcacata 272  Q
    |||||| || ||||||| |||||    
T  36599332 gaacatctagacattttaacata 36599354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 52129421 - 52129467
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagc 191  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||    
T  52129421 ggtggattctaaggtgagggttcaattaagtccctcactggtggagc 52129467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 213
Target Start/End: Complemental strand, 34451485 - 34451417
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatt 213  Q
    |||| |||||| |||||||| |||||||||| ||||||||||| |||| | |||||| |||||||||||    
T  34451485 ggtggattctagggtgagggatcaattaagtacctcaccggtgaagcatataaaaaataccatttgatt 34451417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 26067363 - 26067288
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttt 140  Q
    ||||| ||||||| ||| ||||||||||| |||||  |||| |||||| ||||||||||||| |||||||| ||||    
T  26067363 atattgtaacaaactattcttatctttttcaatgacaccaacgatataacaaatataatataaattcatatatttt 26067288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 24666902 - 24666768
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaatt 242  Q
    |||||| ||| || |||||||||||||||||||||||| | |||||| ||   |||||| ||| ||||||| |||||||| |  ||||| ||| |||||     
T  24666902 aaggtggattatagggtgagggttcaattaagtccctccctggtggaccatgaaaaaaataccgtttgattgaatcaatggttgagatttattgaaaata 24666803  T
Q  243 aaaattagaacatttatacattttcacatagaatc 277  Q
    | | | ||||||| || ||||||| ||||| ||||    
T  24666802 agattgagaacatctagacattttaacatacaatc 24666768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 26764346 - 26764301
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||||||||||||||||| || || |||||||||||||||    
T  26764346 aggtgaattctaaggtgagggttctatcaaatccctcaccggtgga 26764301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 14527626 - 14527582
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||    
T  14527626 aaggtggattctagggtgagggatcaattaagtccctcaccggtg 14527582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 36248399 - 36248443
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||||||||||||||||||  ||||||| |||||||||||||||    
T  36248399 ggtgaattctaaggtgagggagcaattaaatccctcaccggtgga 36248443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 46250823 - 46250883
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatat 125  Q
    ||||| ||||||||||||||||||||||| |||||  ||||  ||||| ||||||||||||    
T  46250823 atattgtaacaaattatacttatctttttcaatgataccaacaatataacaaatataatat 46250883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 13925699 - 13925648
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcaca 194  Q
    |||||| ||||||| ||||||| |||| ||||||||||||||||||| ||||    
T  13925699 aaggtggattctaaagtgagggatcaactaagtccctcaccggtggaccaca 13925648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 51386468 - 51386531
Alignment:
Q  157 ggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaa 220  Q
    ||||||||||||||||||||||||||| ||| | |||  |||||| ||||||  ||||||||||    
T  51386468 ggtgagggttcaattaagtccctcaccagtgaaccacgtaaaaaataccattaaatttaatcaa 51386531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 24666129 - 24666171
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| |||||||| ||||||||||||||||||||||    
T  24666129 ggtggattctagggtgagggatcaattaagtccctcaccggtg 24666171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 26354274 - 26354236
Alignment:
Q  151 ttctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  26354274 ttctagggtgagggttcaattaagtccctcacaggtgga 26354236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 34941501 - 34941539
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcac 182  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  34941501 aggtggattctagggtgagggttcaattaagtccctcac 34941539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 184
Target Start/End: Original strand, 36253492 - 36253526
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccg 184  Q
    |||||||||||||||||| ||||||||||||||||    
T  36253492 attctaaggtgagggttctattaagtccctcaccg 36253526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Complemental strand, 24916133 - 24916072
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 126  Q
    ||||| ||||||||||||||||||||||| ||| |   |||| ||||| |||||||||||||    
T  24916133 atattgtaacaaattatacttatctttttcaataacaacaataatataacaaatataatata 24916072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 144
Target Start/End: Original strand, 28715371 - 28715440
Alignment:
Q  75 aaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 144  Q
    ||||||||||||| ||||| |||||  ||||  ||||||||||| ||||||| |||| ||||| ||||||    
T  28715371 aaattatacttatttttttcaatgacaccaacaatatagcaaatgtaatataaattcttatctgtttgaa 28715440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 4608653 - 4608713
Alignment:
Q  84 ttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 144  Q
    |||| |||||||||||  ||||  ||||| ||||||||||||| |||| ||||||||||||    
T  4608653 ttatatttttaaatgacaccaacaatataacaaatataatataaattcttatctttttgaa 4608713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 6057047 - 6057003
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||||| | |||||||||||||||||||    
T  6057047 ggtggattctagggtgagggttctactaagtccctcaccggtgga 6057003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 6258195 - 6258155
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  6258195 aggtggattctaaggtgagggagcaattaagtccctcaccg 6258155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 13924793 - 13924837
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| |||||||| |||||||| |||||||||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtgga 13924837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 42792775 - 42792819
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| |||||||||||||||||| ||||    
T  42792775 ggtggattctagggtgagggtccaattaagtccctcaccgatgga 42792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 9e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 16449555 - 16449642
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattg 232  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||   || |||||||||||||| |||||||| |||||||||    
T  16449555 ggtggattctagggtgagggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaatcaatggtcaagattg 16449642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 145 - 232
Target Start/End: Original strand, 16459129 - 16459216
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattg 232  Q
    |||| |||||| ||||||||||||||||||||||||||||||| |||||   || |||||||||||||| |||||||| |||||||||    
T  16459129 ggtggattctagggtgagggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaatcaatggtcaagattg 16459216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 277
Target Start/End: Complemental strand, 26240920 - 26240787
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaatta 243  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||| ||   | |||| ||| ||||||| |||||||| |  ||||| ||| ||||| |    
T  26240920 aggtggattctagggtgagggttcaattaagtccctcaccggtggaccatgaagaaaataccgtttgattgaatcaatggttgagatttattgaaaataa 26240821  T
Q  244 aaattagaacatttatacattttcacatagaatc 277  Q
     | | ||||||| || ||||||| ||||| ||||    
T  26240820 tattgagaacatctagacattttaacatacaatc 26240787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 27745555 - 27745595
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  27745555 aggtggattctaaggtgagggttcaattaagtccctcaccg 27745595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 21257966 - 21257907
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaaca 203  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||| |||||  ||||||||    
T  21257966 aggtgcattctaaggtgagggttcaattaagttcctcaccagtgaagcaccaaaaaaaca 21257907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 35112499 - 35112429
Alignment:
Q  71 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||||| ||||||||||||||| ||| |  | ||| ||||||||||||||||||| |||| |||||||||    
T  35112499 taacaaactatacttatctttttcaataacactaataatatagcaaatataatataaattcttatcttttt 35112429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 12449348 - 12449288
Alignment:
Q  157 ggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaat 217  Q
    |||||||| |||||||||||||||||||||||| |||| | |||| ||||||  |||||||    
T  12449348 ggtgagggatcaattaagtccctcaccggtggaccacaaacaaaataccattaaatttaat 12449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 24848476 - 24848432
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||    
T  24848476 aaggtggattctagggtgagggttctattaagtccctcaccggtg 24848432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 9848467 - 9848388
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 144  Q
    ||||| ||| ||||||||||||| ||||| ||| | | |||||||||| |||||||| |||| |||| | ||||||||||    
T  9848467 atattgtaataaattatacttatttttttcaataatgtcaatgatataacaaatatattataaattcttttctttttgaa 9848388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 26240113 - 26240156
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||    
T  26240113 aggtggattctagggtgagggatcaattaagtccctcaccggtg 26240156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 182
Target Start/End: Complemental strand, 42345898 - 42345867
Alignment:
Q  151 ttctaaggtgagggttcaattaagtccctcac 182  Q
    ||||||||||||||||||||||||||||||||    
T  42345898 ttctaaggtgagggttcaattaagtccctcac 42345867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 2261595 - 2261553
Alignment:
Q  141 tgaaggtgaattctaaggtgagggttcaattaagtccctcacc 183  Q
    |||||||||||| || |||||||||||||||||| ||||||||    
T  2261595 tgaaggtgaattttagggtgagggttcaattaagcccctcacc 2261553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 24847783 - 24847825
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  24847783 ggtggattctagggtgagggttctattaagtccctcaccggtg 24847825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Complemental strand, 43115302 - 43115248
Alignment:
Q  72 aacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 126  Q
    ||||||||||  |||||||||| |||||  |||||||||| ||||||||||||||    
T  43115302 aacaaattatgtttatcttttttaatgacaccaatgatattgcaaatataatata 43115248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 2260858 - 2260894
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggt 186  Q
    |||||| |||||||||||||| |||||||||||||||    
T  2260858 attctagggtgagggttcaatcaagtccctcaccggt 2260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 14166950 - 14166914
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggt 186  Q
    |||||| |||||||| |||||||||||||||||||||    
T  14166950 attctagggtgagggctcaattaagtccctcaccggt 14166914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 27746206 - 27746162
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| ||||||  |||||||||||||||||||||||||| |||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtgga 27746162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31109239 - 31109283
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| |||||| ||||||||||||||||    
T  31109239 ggtggattctagggtgagggtccaattaggtccctcaccggtgga 31109283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 31116732 - 31116688
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| |||||| ||||||||||||||||    
T  31116732 ggtggattctagggtgagggtccaattaggtccctcaccggtgga 31116688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 31239177 - 31239101
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||| ||||||| ||||||||||||||| || ||   |||  ||||| ||||||||||||| |||| |||||||||    
T  31239177 atattgtaacaaactatacttatctttttcaaggatatcaagaatataacaaatataatataaattcttatcttttt 31239101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 33357777 - 33357721
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaa 201  Q
    |||| |||||| |||||||| |||  |||||||||||||||||||||| | ||||||    
T  33357777 ggtggattctagggtgagggatcagataagtccctcaccggtggagcagaaaaaaaa 33357721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 50657189 - 50657145
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| ||||||||| |||||  |||||||||||||||||||||||    
T  50657189 ggtggattctaaggcgagggagcaattaagtccctcaccggtgga 50657145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 127784 - 127706
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    ||||| |||||| ||||||||||||||||||||| ||||||||| |||||| | |||||||||||||||| ||||||||    
T  127784 aggtggattctagggtgagggttcaattaagtccttcaccggtgaagcacaaataaaacaccatttgattgaatcaatg 127706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 293
Target Start/End: Original strand, 127033 - 127183
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac--acaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaatt 242  Q
    |||| |||||| ||||||||||||| ||||||||||| | ||||| |||  | |||||| ||||||||||| |||||||| || | |||  || |||||     
T  127033 ggtggattctagggtgagggttcaactaagtccctcatcagtggaccacaaaaaaaaaataccatttgattaaatcaatggtccaaattatttgaaaata 127132  T
Q  243 aaaattagaacatttatacattttcacatagaatcctacccctatctcttt 293  Q
    ||||| ||||||||||    ||| |||| | ||||||||| ||||||||||    
T  127133 aaaataagaacatttagttctttccacacacaatcctacctctatctcttt 127183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 20606970 - 20606927
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  20606970 aggtgaattctagggtgagggttcaattaagtccctcaccggtg 20606927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 38138774 - 38138698
Alignment:
Q  146 gtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    ||||||| |||||||||| |||||||||||||||||| |||||| ||   | |||| ||||||||||||||| ||||    
T  38138774 gtgaattttaaggtgaggattcaattaagtccctcactggtggatcatgaataaaataccatttgatttaattaatg 38138698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 139
Target Start/End: Complemental strand, 12599635 - 12599561
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttt 139  Q
    ||||||||| |||||||| |||||||||| ||| |  ||||| ||||| ||||||||||||| |||| |||||||    
T  12599635 atattataataaattatatttatctttttcaattataccaataatataacaaatataatataaattcttatcttt 12599561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 44297461 - 44297423
Alignment:
Q  146 gtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  44297461 gtgaattctagggtgagggttcaattaagtccctcaccg 44297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 18537541 - 18537496
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggag 190  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||    
T  18537541 ggtggattctatgatgagggttcaattaagtccctcaccggtggag 18537496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 44296860 - 44296909
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcaca 194  Q
    ||||||||||| ||||||||| |||||||||||||||| |||||| ||||    
T  44296860 ggtgaattctagggtgagggtccaattaagtccctcactggtggaccaca 44296909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 3752432 - 3752508
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||| ||||||| |||| |||| ||||| ||||| ||| || ||||||||||| ||||||| |||| |||||||||    
T  3752432 atattgtaacaaactatatttatatttttcaatgaggccgataatatagcaaatgtaatataaattcttatcttttt 3752508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 30202036 - 30201992
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||||||||||||  |||||||||||||||||||||||    
T  30202036 ggtggattctaaggtgagggagcaattaagtccctcaccggtgga 30201992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 38502362 - 38502282
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagc-aaatataatatatattcatatctttttgaa 144  Q
    ||||| ||||||| ||||||||||||||| |||||  ||||  ||||| | |||||||||||| |||| ||||||||||||    
T  38502362 atattgtaacaaactatacttatctttttcaatgataccaacaatataacaaaatataatataaattcttatctttttgaa 38502282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 44986812 - 44986859
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 192  Q
    ||||||||||| |||||||| |||||||||||||||| ||||| ||||    
T  44986812 ggtgaattctagggtgagggatcaattaagtccctcatcggtgaagca 44986859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 20170515 - 20170572
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataa 122  Q
    ||||| ||||||||||||||||||||||| |||||   |||| ||||| |||||||||    
T  20170515 atattgtaacaaattatacttatctttttcaatgatatcaataatataacaaatataa 20170572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 1141300 - 1141344
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||||||||||||  |||| ||||||||||||||||||    
T  1141300 ggtggattctaaggtgagggagcaatgaagtccctcaccggtgga 1141344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 7755015 - 7754971
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| |||||||| |||||||||||| |||||||||||    
T  7755015 ggtggattctagggtgagggatcaattaagtccttcaccggtgga 7754971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 21947759 - 21947831
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    ||||||| ||||||| |||||||| ||||||| | ||| || ||| |||| | |||||| |||||||||||||    
T  21947759 attctaatgtgaggggtcaattaaatccctcatcagtgaaggacaaaaaagataccattagatttaatcaatg 21947831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 23458667 - 23458631
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggt 186  Q
    |||||| |||||||||| |||||||||||||||||||    
T  23458667 attctacggtgagggtttaattaagtccctcaccggt 23458631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 202575 - 202664
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattg 232  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||   || |||||||||||||| ||| |||| |||||||||    
T  202575 aaggtgaattctaggatgagggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaataaatggtcaagattg 202664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 232
Target Start/End: Original strand, 317412 - 317501
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattg 232  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||||   || |||||||||||||| ||| |||| |||||||||    
T  317412 aaggtgaattctaggatgagggttcaattaagtccctcaccggtgaagcaccacaataacaccatttgattgaataaatggtcaagattg 317501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 26847096 - 26847173
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaat 221  Q
    ||||| |||||| ||||||||| ||||||||||||||||||||| | |||  |||||| |||||| ||||||||||||    
T  26847096 aggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacggaaaaaataccattagatttaatcaat 26847173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 42094800 - 42094753
Alignment:
Q  137 tttttgaaggtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    ||||| ||||||||||||| |||||||| |||||||||||||||||||    
T  42094800 ttttttaaggtgaattctagggtgagggatcaattaagtccctcaccg 42094753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 42664052 - 42664001
Alignment:
Q  138 ttttgaaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||||||| || |||||||||||||||||||||||||| ||||||    
T  42664052 tttttaaggtgaattttagggtgagggttcaattaagtccctcactggtgga 42664001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 36182169 - 36182127
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  36182169 ggtgaattctatggcgagggttcaattaagtccctcaccggtg 36182127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 9929199 - 9929244
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||||||||||||||||||| || | |||||||||||||||||||    
T  9929199 aggtgaattctaaggtgagggctctactaagtccctcaccggtgga 9929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 22633017 - 22632972
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  22633017 aggtggattctagggtgagggatcaattaagtccctcaccggtgga 22632972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 42094007 - 42094056
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 192  Q
    |||||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  42094007 aaggtggattctagggtgagggatcaattaagtccctcaccggtgaagca 42094056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 230
Target Start/End: Original strand, 22632327 - 22632407
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagat 230  Q
    |||||| |||||||| |||||||||||||||||||||||| ||   ||| || ||| || |||||||| ||||||| ||||    
T  22632327 attctagggtgagggatcaattaagtccctcaccggtggaccatgaaaataaaaccgttagatttaattaatgatctagat 22632407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 36180689 - 36180729
Alignment:
Q  147 tgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  36180689 tgaattctagggtgagggtttaattaagtccctcaccggtg 36180729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 15172362 - 15172421
Alignment:
Q  72 aacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 131  Q
    |||||||||| ||||||||||| |||||  ||||  ||||||||||||||||||| ||||    
T  15172362 aacaaattattcttatctttttcaatgacaccaacaatatagcaaatataatataaattc 15172421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 4402335 - 4402293
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  4402335 ggtggattctagggtgagggttctattaagtccctcaccggtg 4402293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 11420375 - 11420453
Alignment:
Q  66 tattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 144  Q
    |||| |||||||| || | ||||||||| |||||  ||||  ||||| ||||||||||||| |||| ||||||||||||    
T  11420375 tattgtaacaaatcattcatatctttttcaatgataccaacaatataacaaatataatataaattcttatctttttgaa 11420453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 16718415 - 16718381
Alignment:
Q  155 aaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||| ||||||||||||||||||||||||    
T  16718415 aaggtgagggctcaattaagtccctcaccggtgga 16718381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 16911094 - 16911052
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| |||||||| ||||||||||||||||||||||    
T  16911094 ggtggattctagggtgagggctcaattaagtccctcaccggtg 16911052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 34142882 - 34142940
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataat 123  Q
    ||||| ||||||| |||||||||||||||||||||  ||||  ||||| ||||||||||    
T  34142882 atattgtaacaaactatacttatctttttaaatgataccaacaatataacaaatataat 34142940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Complemental strand, 2442340 - 2442283
Alignment:
Q  84 ttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    |||||||||| |||||| ||||| ||||| ||||||||||||| |||  |||||||||    
T  2442340 ttatctttttcaatgaaaccaataatataacaaatataatataaatttttatcttttt 2442283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Original strand, 19220913 - 19220954
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggt 186  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  19220913 ggtgaattctaggatgagggttcaattaagtccgtcaccggt 19220954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 5434032 - 5434076
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| ||||||||||| |||||||||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtgga 5434076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 27243446 - 27243490
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  27243446 ggtggattataaggcgagggatcaattaagtccctcaccggtgga 27243490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 27255021 - 27255065
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| ||| ||||| ||||| ||||||||||||||||||||||||    
T  27255021 ggtggattataaggcgagggatcaattaagtccctcaccggtgga 27255065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 182
Target Start/End: Original strand, 33321502 - 33321534
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcac 182  Q
    |||||||||||| ||||||||||||||||||||    
T  33321502 attctaaggtgatggttcaattaagtccctcac 33321534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 44656366 - 44656326
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    ||||| |||||||||||||||  ||||||||||||||||||    
T  44656366 aggtggattctaaggtgagggagcaattaagtccctcaccg 44656326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 293
Target Start/End: Complemental strand, 46491737 - 46491588
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaatta 243  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||||  |   |||||| ||||||||||| |||||||| || | |||  || ||||| |    
T  46491737 aggtggattctagggtgagggttcaactaagtccctcaccggtggactatcaaaaaaataccatttgattaaatcaatggtccaaattatttgaaaataa 46491638  T
Q  244 aaattagaacatttatacattttcacatagaatcctacccctatctcttt 293  Q
    |||| ||||||||||    ||| |||| | ||||||||| ||||||||||    
T  46491637 aaataagaacatttagttctttccacacacaatcctacctctatctcttt 46491588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 42818601 - 42818557
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  42818601 ggtgaattctagggtgagggttcaattaagtccctcaccggtgga 42818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Original strand, 10039910 - 10039989
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 144  Q
    ||||| |||||||||||| |||||||||| |||||  ||||  ||||||||||||||||||| |||  ||||||||||||    
T  10039910 atattgtaacaaattatatttatctttttcaatgacaccaacaatatagcaaatataatataaattattatctttttgaa 10039989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 231
Target Start/End: Original strand, 10590303 - 10590384
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagatt 231  Q
    |||||| |||||| |||||||||||||||||| ||||| |||||  |||||||| |||| |||| |||||| | ||||||||    
T  10590303 attctagggtgagagttcaattaagtccctcatcggtgaagcaccaaaaaaacatcattagattgaatcaagggtcaagatt 10590384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 3314955 - 3314997
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  3314955 ggtggattctacggtgagggttcaattaagtccctcaccggtg 3314997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 7329118 - 7329072
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||    
T  7329118 aaggtgacttctagggtgagggttcaattaagtccctcactggtgga 7329072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 30581314 - 30581276
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcacc 183  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  30581314 ggtgaattctagggtgagggttcaattaagtccctcacc 30581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 32310872 - 32310802
Alignment:
Q  71 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||||||||||||||||||||| ||||| | |||| |||||  |||||| ||||| |||| |||||||||    
T  32310872 taacaaattatacttatctttttcaatgatgtcaattatataaaaaatattatataaattcttatcttttt 32310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 36611555 - 36611593
Alignment:
Q  149 aattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  36611555 aattctagggtgagggttcaattaagtccctcaccggtg 36611593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 3315511 - 3315470
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggt 186  Q
    |||| ||||||||||||||| |||||||||||||||||||||    
T  3315511 ggtggattctaaggtgagggctcaattaagtccctcaccggt 3315470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 767136 - 767180
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 767180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 34807928 - 34807972
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||| |||||||||||||  |||||||||||||||||||||||    
T  34807928 ggtgaagtctaaggtgagggagcaattaagtccctcaccggtgga 34807972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 41965825 - 41965781
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||    
T  41965825 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 41965781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 2403490 - 2403447
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||||||||| | ||||||||||| |||||||||||||||||    
T  2403490 aggtgaattctaggatgagggttcaactaagtccctcaccggtg 2403447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Original strand, 44120357 - 44120400
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  44120357 aggtggattctaaggtgagggagcaattaagtccctcaccggtg 44120400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 44876977 - 44876910
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaat 217  Q
    |||||| |||||||| ||||||||||||||||||| |||| |||| | |||| ||||||  |||||||    
T  44876977 attctagggtgagggatcaattaagtccctcaccgatggaccacaaacaaaataccattaaatttaat 44876910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 10591011 - 10590941
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaa 220  Q
    |||||||||||||||||||||||| ||||||||| ||| | |||  |||||||| | || |||| ||||||    
T  10591011 attctaaggtgagggttcaattaactccctcacctgtgaaacaccaaaaaaacatcgttagattgaatcaa 10590941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 17114145 - 17114187
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| ||||||||||||||||||||||||| |||||    
T  17114145 ggtggattctagggtgagggttcaattaagtccctcatcggtg 17114187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Original strand, 38237444 - 38237514
Alignment:
Q  71 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||||||||||||||| ||||| |||||  | ||  ||||| ||||||||||||| |||| |||||||||    
T  38237444 taacaaattatacttatttttttcaatgacacaaacaatataacaaatataatataaattcttatcttttt 38237514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 1511852 - 1511889
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  1511852 attctaaggtgatggttctattaagtccctcaccggtg 1511889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 4094251 - 4094312
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 126  Q
    ||||| ||||||| ||||||||| ||||| || ||| |||| |||||| |||||||||||||    
T  4094251 atattgtaacaaactatacttatatttttcaaagaaaccaacgatataacaaatataatata 4094312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 6099958 - 6100003
Alignment:
Q  72 aacaaattatacttatctttttaaatgaagccaatgatatagcaaa 117  Q
    |||||||||||||||||||||||||||   ||||| ||||||||||    
T  6099958 aacaaattatacttatctttttaaatgtcaccaataatatagcaaa 6100003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 24874627 - 24874582
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||| |||||| |||||||||||||||| |||||||| |||||||    
T  24874627 aggtggattctagggtgagggttcaattaggtccctcatcggtgga 24874582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 28007156 - 28007201
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||| |||||| ||||||||  |||||||||||||||||||||||    
T  28007156 aggtggattctagggtgagggagcaattaagtccctcaccggtgga 28007201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 36611542 - 36611465
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    |||| |||||| ||||||||||||||||| || |||||||||||| ||   | |||| |||||| |||||||| ||||    
T  36611542 ggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatg 36611465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 42817797 - 42817842
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||||| ||||| ||| ||||||||||||||| |||||||    
T  42817797 aggtgaattctagggtgatggtccaattaagtccctcatcggtgga 42817842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 768002 - 767970
Alignment:
Q  157 ggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||||||| |||||||||||||||||||||||    
T  768002 ggtgagggtccaattaagtccctcaccggtgga 767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 14774406 - 14774482
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||| ||||||||||||||||||||||| |||||   ||||   ||| ||||||| ||||| |||| |||||||||    
T  14774406 atattgtaacaaattatacttatctttttcaatgatatcaatagcataacaaatattatataaattcttatcttttt 14774482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 15224859 - 15224935
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||| ||||||||||||||||||||||| |||||   ||||   ||| ||||||| ||||| |||| |||||||||    
T  15224859 atattgtaacaaattatacttatctttttcaatgatatcaatagcataacaaatattatataaattcttatcttttt 15224935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 24862574 - 24862546
Alignment:
Q  65 atattataacaaattatacttatcttttt 93  Q
    |||||||||||||||||||||||||||||    
T  24862574 atattataacaaattatacttatcttttt 24862546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 2029097 - 2029018
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    |||||| |||||| |||||||| |||||||||||||||||||||| |||||| | |||||| ||||| ||| ||||||||    
T  2029097 aaggtggattctagggtgagggctcaattaagtccctcaccggtgaagcacaaataaaacaacatttaattgaatcaatg 2029018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 39936254 - 39936340
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagatt 231  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||   ||||||||||||  ||||||| |||| | ||||||    
T  39936254 aggtggattctaaggtgagggttcaattaagtccctcacc-atggagcactagaaaaacaccattaaatttaatgaatggttaagatt 39936340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 39466884 - 39466929
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  39466884 aggtgaattctagggtgagggtccaattaagtccctcaccggtgga 39466929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 35524116 - 35524166
Alignment:
Q  139 tttgaaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  35524116 tttgaaggtggattctaggatgagagttcaattaagtccctcaccggtgga 35524166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 24565573 - 24565650
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||| ||   | |||| |||||| |||||||| ||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatg 24565650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 222
Target Start/End: Original strand, 24606609 - 24606686
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatg 222  Q
    |||| |||||| ||||||||||||||||| ||||||||||||||| ||   | |||| |||||| |||||||| ||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatg 24606686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 8743144 - 8743108
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggt 186  Q
    |||||||||||| ||||||||||||||||||||||||    
T  8743144 attctaaggtgaaggttcaattaagtccctcaccggt 8743108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 23253534 - 23253458
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcac-acaaaaaacaccatttgatttaatcaa 220  Q
    |||| |||||| ||||||||| ||||||||||||||||||||| | |||   |||||| |||||| |||||||||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccacgtaaaaaaaaaccattagatttaatcaa 23253458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 39937954 - 39937910
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| |||||||||||| ||||||||||||||||||||    
T  39937954 ggtggattctagggtgagggttcagttaagtccctcaccggtgga 39937910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 40372208 - 40372164
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||    
T  40372208 ggtggattctagggtgagggttcaattaagttcctcaccggtgga 40372164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 4353017 - 4353072
Alignment:
Q  71 taacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatata 126  Q
    ||||||||||||||||||||||| ||| |  ||||| ||||| |||||||||||||    
T  4353017 taacaaattatacttatctttttcaattacaccaataatataacaaatataatata 4353072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 27345967 - 27345928
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  27345967 ggtggattctagggtgagggttcaattaagtccctcaccg 27345928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 39467686 - 39467643
Alignment:
Q  146 gtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||| |||||||||| |||||||||||||| |||||||    
T  39467686 gtgaattctagggtgagggtttaattaagtccctcatcggtgga 39467643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 2028336 - 2028450
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaatta 243  Q
    ||||| ||| || ||||||||||||| |||||||||| ||| |||| |||   ||||||||||||||||| ||| | || || | |||  || ||||| |    
T  2028336 aggtggattttagggtgagggttcaactaagtccctcgccgatggaccaccacaaaaacaccatttgattaaattattggtccaaattatttgaaaataa 2028435  T
Q  244 aaattagaacattta 258  Q
    |||| ||||||||||    
T  2028436 aaataagaacattta 2028450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 38129126 - 38129168
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||||||||||||  |||||||||||||||||||||    
T  38129126 ggtggattctaaggtgagggagcaattaagtccctcaccggtg 38129168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 35695360 - 35695295
Alignment:
Q  79 tatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatctttttgaa 144  Q
    ||||||||||||||| |||||  ||||  ||||| || |||||||||| ||| |||||||||||||    
T  35695360 tatacttatctttttcaatgacaccaacaatataccacatataatataaatttatatctttttgaa 35695295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 42638957 - 42638898
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatat 125  Q
    ||||| ||||||| |||| |||||||||| |||||  ||||||||||| ||||||||||||    
T  42638957 atattgtaacaaaatatatttatctttttcaatgataccaatgatata-caaatataatat 42638898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 8231641 - 8231716
Alignment:
Q  66 tattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    |||||||||||||||||||||||||||| |||||| ||||  | |||| |||||||||||| |||| |||||||||    
T  8231641 tattataacaaattatacttatctttttcaatgaaaccaacaaaatagaaaatataatataaattcttatcttttt 8231716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 2226743 - 2226661
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattg 232  Q
    |||||| ||||||||||||||||| |||||||| |||| |||||   || |||||||||||||| |||||||| |||||||||    
T  2226743 attctagggtgagggttcaattaattccctcacaggtgaagcaccacaataacaccatttgattgaatcaatggtcaagattg 2226661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 269
Target Start/End: Original strand, 53242665 - 53242791
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgatcaagattgattcaaaatta 243  Q
    ||||| ||| || |||||||  |||||||||||||||| ||||||| |||  | |||| ||||||||||| |||||||| | |||||| ||| ||||| |    
T  53242665 aggtggattatagggtgaggaatcaattaagtccctcatcggtggaccacgaagaaaataccatttgattgaatcaatggttaagatttattgaaaataa 53242764  T
Q  244 aaatt-agaacatttatacattttcac 269  Q
    || || ||||||| || ||||||||||    
T  53242765 aatttgagaacatctagacattttcac 53242791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 29516595 - 29516554
Alignment:
Q  147 tgaattctaaggtgagggttcaattaagtccctcaccggtgg 188  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  29516595 tgaattctacggtgagggttcaattaagtccctcaccggtgg 29516554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 188
Target Start/End: Complemental strand, 53346546 - 53346501
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtgg 188  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  53346546 aaggtgaattctacagtgagggttcaattaagtccctcaccggtgg 53346501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 54753576 - 54753620
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgg 188  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||    
T  54753576 aggtgaattctacggtgagggttcaattaagtccctcaccagtgg 54753620  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 18745418 - 18745376
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||||||||| |||||||||||||| ||||||||||||||||    
T  18745418 ggtgaattctagggtgagggttcaatcaagtccctcaccggtg 18745376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Original strand, 20807937 - 20807979
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  20807937 ggtggattctagggtgagggttcaattaagtccctcaccggtg 20807979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 47571987 - 47571945
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||||||||| |||||||| ||||||||||||||||||||||    
T  47571987 ggtgaattctagggtgagggatcaattaagtccctcaccggtg 47571945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 187
Target Start/End: Complemental strand, 33762731 - 33762694
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||||||||||||||| |||||||||||||||||||    
T  33762731 attctaaggtgagggttctattaagtccctcaccggtg 33762694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 187
Target Start/End: Original strand, 54308458 - 54308495
Alignment:
Q  150 attctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||| |||||||||||||||||||||||||||||||    
T  54308458 attctagggtgagggttcaattaagtccctcaccggtg 54308495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 9830584 - 9830616
Alignment:
Q  157 ggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||||||||||||||||||||||||||||    
T  9830584 ggtgagggttcaattaagtccctcaccggtgga 9830616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 15287567 - 15287611
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||||||| |||||||||||||||||||||||    
T  15287567 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 15287611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 53344790 - 53344734
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaa 200  Q
    ||||| |||||| |||||||| ||||| |||||||||||||||| |||||| |||||    
T  53344790 aggtggattctagggtgagggatcaatcaagtccctcaccggtgaagcacataaaaa 53344734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 55375 - 55336
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccg 184  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  55375 ggtgaattctaggatgagggttcaattaagtccctcaccg 55336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 17353802 - 17353881
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacaccatttgatttaatcaatgat 224  Q
    |||||||||||  ||||||||||||||||||||| ||||| ||||| | | |||| | ||| |  |||||||||||||||    
T  17353802 ggtgaattctagtgtgagggttcaattaagtcccacaccgatggagaagagaaaataaaccgtcagatttaatcaatgat 17353881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 47571196 - 47571243
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 192  Q
    |||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  47571196 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagca 47571243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Original strand, 49349676 - 49349723
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtggagca 192  Q
    |||| |||||| |||||||| |||||||||||||||||||||| ||||    
T  49349676 ggtggattctagggtgagggatcaattaagtccctcaccggtgaagca 49349723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 52924482 - 52924439
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||| |||||||||||||||  |||||||||||||||||||||    
T  52924482 aggtggattctaaggtgagggagcaattaagtccctcaccggtg 52924439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 4707004 - 4706962
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| ||||||||||| |||||||||||||||||||    
T  4707004 ggtggattctagggtgagggttctattaagtccctcaccggtg 4706962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 20808655 - 20808613
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| ||||||||||||| |||||||||||||||||    
T  20808655 ggtggattctagggtgagggttcaagtaagtccctcaccggtg 20808613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 49350318 - 49350276
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||| |||||| |||||||||||||||||||||||| ||||||    
T  49350318 ggtggattctagggtgagggttcaattaagtccctcgccggtg 49350276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 14746939 - 14746890
Alignment:
Q  156 aggtgagggttcaattaagtccctcaccggtggagcacacaaaaaacacc 205  Q
    |||||||||| ||||||||||||||| ||||||| |||  ||||||||||    
T  14746939 aggtgagggtccaattaagtccctcatcggtggaccacgaaaaaaacacc 14746890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Original strand, 31629341 - 31629385
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||||||| ||||||||| |||||||||||| ||||||| |||||    
T  31629341 ggtgaattttaaggtgagtgttcaattaagttcctcaccagtgga 31629385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 2138475 - 2138521
Alignment:
Q  143 aaggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  2138475 aaggtgaattctagggtgagggtccaattaggtccctcaccggtgga 2138521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 13708001 - 13708067
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 131  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13708001 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13708067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 13710089 - 13710155
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 131  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13710089 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13710155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 13712177 - 13712243
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 131  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13712177 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13712243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 13715492 - 13715558
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 131  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13715492 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13715558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Original strand, 13717580 - 13717646
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattc 131  Q
    |||||||||||||||||||||||||||| ||||||  |||||  ||||  |||||||||||| ||||    
T  13717580 atattataacaaattatacttatcttttaaaatgagaccaatagtataaaaaatataatataaattc 13717646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 5312240 - 5312284
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtgg 188  Q
    ||||||||||||  |||||||||||||||||||||||||| ||||    
T  5312240 aggtgaattctacagtgagggttcaattaagtccctcaccagtgg 5312284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 13084928 - 13084885
Alignment:
Q  144 aggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||    
T  13084928 aggtgaattctagggtgagggttcaactaagtctctcaccggtg 13084885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 187
Target Start/End: Complemental strand, 2741447 - 2741405
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtg 187  Q
    ||||||||||||||||| |||| ||| ||||||||||||||||    
T  2741447 ggtgaattctaaggtgatggtttaatcaagtccctcaccggtg 2741405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 4577967 - 4578044
Alignment:
Q  65 atattataacaaattatacttatcttttt-aaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||| ||||||||||||||||| ||||| |||| |  | ||  ||||||||||||||||||| |||| |||||||||    
T  4577967 atattctaacaaattatacttattttttttaaataacactaacaatatagcaaatataatataaattcttatcttttt 4578044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 16436872 - 16436948
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    |||||| |||||| ||||||||| ||||  |||||   |||| |||||| |||||||||||| |||| |||||||||    
T  16436872 atattacaacaaactatacttatattttacaatgacatcaataatatagaaaatataatataaattcttatcttttt 16436948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 16719042 - 16718998
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    |||| |||||| ||||| || ||||||||||||||||||||||||    
T  16719042 ggtggattctagggtgacggatcaattaagtccctcaccggtgga 16718998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 19405121 - 19405085
Alignment:
Q  145 ggtgaattctaaggtgagggttcaattaagtccctca 181  Q
    ||||||||||||||||||||||||||||  |||||||    
T  19405121 ggtgaattctaaggtgagggttcaattagatccctca 19405085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 29178507 - 29178431
Alignment:
Q  65 atattataacaaattatacttatctttttaaatgaagccaatgatatagcaaatataatatatattcatatcttttt 141  Q
    ||||| ||||||| |||| |||| ||||| |||||  | ||| ||||||||||||||||||| |||| | |||||||    
T  29178507 atattttaacaaactataattatatttttcaatgagactaataatatagcaaatataatataaattcttgtcttttt 29178431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 6470 - 6508
Alignment:
Q  151 ttctaaggtgagggttcaattaagtccctcaccggtgga 189  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  6470 ttctagggtgagggttcaattaagtccctcaccgatgga 6508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 97206 - 97242
Alignment:
Q  147 tgaattctaaggtgagggttcaattaagtccctcacc 183  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  97206 tgaattctaaggtgatggttcaatcaagtccctcacc 97242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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