View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_high_28 (Length: 342)
Name: NF20435_high_28
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 12 - 313
Target Start/End: Complemental strand, 8070274 - 8069973
Alignment:
| Q |
12 |
agcagagaggacattgtggattttgaaggcaactaaaagaggtaagattattggttcaagaactattggtaacttatatttcccatccattcgtaatata |
111 |
Q |
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| T |
8070274 |
agcagagaggacattgtggattttggaggcaaccaaacgaggtaagatcattggatcaagaactattagtaacttatatttcccatccattactaatata |
8070175 |
T |
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| Q |
112 |
ttattagtagatagactcaaacataatcatatgaacatataagtcaactgtgtgatagtaattataatgtgatgttcaataagacatcttttaaagtaat |
211 |
Q |
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| T |
8070174 |
ttattagtagatagactcaaacataatcatatgaacatataagtcaactgtgtgatagtaattataatgtgatgttcaataagacatcttttaaagtaat |
8070075 |
T |
|
| Q |
212 |
aatcaatctgatggatctattttcttcattggtaagaggaaaaacagtgttggagtttttgcaatttgttggatttggacaataggaggagtattgagtt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8070074 |
catcaatctgatggatctattttcttcattggtaagaggaaaaacagtgttggggtttttgcaatttgttggatttggacaataggaggagtattgagtt |
8069975 |
T |
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| Q |
312 |
ct |
313 |
Q |
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|| |
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| T |
8069974 |
ct |
8069973 |
T |
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