View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_high_33 (Length: 324)
Name: NF20435_high_33
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 3980389 - 3980097
Alignment:
| Q |
17 |
cattttggtcgaatggttgtatacaaaagaagaatacaagttacatagatggtttcttgaaatacacactcatgaaagtgccagacacgtcttcgtcatg |
116 |
Q |
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| T |
3980389 |
cattttggtcgaatggttgtatacaaaagaagaattcaagttacatagatggtttcttgaaatacacactcatgaaagtgccagacacgtcttcgtcatg |
3980290 |
T |
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| Q |
117 |
gtttagtaagacgttgaatcttgaggaatgccggaagtggtgtctgagaaatagttcgtgtgtagcgtatgcaaatattgatatacgtaacggaggaact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3980289 |
gtttagtaagacgttgaatcttgaggaatgccggaagtggtgtctgagaaatagttcgtgtgtagcgtatgcaaatattgatatacgtaacggaggaagt |
3980190 |
T |
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| Q |
217 |
ggatgtctgatatggtttaataatctgatagatgtgaggaaattctctcaatggggacaagatctttatgttagaatccctccttcagaatta |
309 |
Q |
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| T |
3980189 |
ggatgtctgatatggtttaataatctgatagatgtgaggaaattctctcaatggggacaagatctttatgttagaatccctccttcagaatta |
3980097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 23363205 - 23363169
Alignment:
| Q |
259 |
ttctctcaatggggacaagatctttatgttagaatcc |
295 |
Q |
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| T |
23363205 |
ttctctcattggggacaagatctttatgttagaatcc |
23363169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 23348572 - 23348604
Alignment:
| Q |
259 |
ttctctcaatggggacaagatctttatgttaga |
291 |
Q |
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| T |
23348572 |
ttctctcattggggacaagatctttatgttaga |
23348604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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