View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_high_43 (Length: 285)
Name: NF20435_high_43
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 24 - 270
Target Start/End: Original strand, 33278297 - 33278542
Alignment:
| Q |
24 |
gcacatgttctctgaaaaacttacactgctatagaaatttcatttttgtttaacatgcactgtattttgttatattatttgctcactcctacttttacaa |
123 |
Q |
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| T |
33278297 |
gcacatgttctctgaaaaacttacactgctatagaaatttcatttttgtttaacatgcactgtattttgttacattatttgctcactcctacttttacta |
33278396 |
T |
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| Q |
124 |
atttactttttagccaaaatttctcatgttaatatcaaattcaaaattaagtttatattacagtcctatgctttaaaaagttatcaacgaaattggtagt |
223 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||| |
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| T |
33278397 |
atttaccttttagccaaaatttctcatgttaatatcaaattcaaaattaagtttata-tacagtcctatgctttaaaaaattatcaaagaaattgctagt |
33278495 |
T |
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| Q |
224 |
ttcaaattttgaacaaaatttatatgatagctttaaaatggtttaat |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33278496 |
ttcaaattttgaacaaaatttatatgatagctttaaaatggtttaat |
33278542 |
T |
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