View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_high_54 (Length: 234)
Name: NF20435_high_54
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_54 |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 16686655 - 16686416
Alignment:
| Q |
1 |
agtttcattcatggtccattgacataaacatggacactagacacgacaatga------cactgacatgtcgacacctgcaataatttgagaaaaatataa |
94 |
Q |
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| T |
16686655 |
agtttcattcatggtccactgacacaaacatgaacactagacacgacaatgagactgacactgacatgtcgacacctgcaataatttgagaaaaatataa |
16686556 |
T |
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| Q |
95 |
taaatgtaactaaatatgtcggggtcatttaggtgtcaaatatcaatgtgtgtcgaacagtgaaaacactacaatagcatatcccttgaattcaattgga |
194 |
Q |
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| T |
16686555 |
taaatgtaactaaatatgtcggggtcatttaggtgtcaaatattaacgtgtgtcggacactgaaaatactacaatagcatatcccttgaattcaattgga |
16686456 |
T |
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| Q |
195 |
gaagatcaatgggtcaatataatactgcattgcataaaaa |
234 |
Q |
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| T |
16686455 |
gaagatcaatggatcaatatactactgcattgcataaaaa |
16686416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 164 - 234
Target Start/End: Original strand, 4585547 - 4585618
Alignment:
| Q |
164 |
tacaatagcat-atcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcataaaaa |
234 |
Q |
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| T |
4585547 |
tacaatagcatcatcccttaaattcagtaggagaatatcaatggatcaatataatactacattgcataaaaa |
4585618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 4570881 - 4570955
Alignment:
| Q |
161 |
cactacaatagcat-atcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcataaaaa |
234 |
Q |
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| T |
4570881 |
cactacaatagcctcatcccttaaattcaatagcagaagatcaatggatcaatataatactacattgcattaaaa |
4570955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 4585014 - 4585084
Alignment:
| Q |
69 |
cctgcaataatttgagaaaaatataataaatgtaactaaatatgtcggggtcatttaggtgtcaaatatcaa |
140 |
Q |
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| T |
4585014 |
cctgcaataatttgagaaaa-tagaataaatgtatttaaatgtgttggagtcgtttaggtgtcaaatatcaa |
4585084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 140
Target Start/End: Original strand, 4570452 - 4570495
Alignment:
| Q |
97 |
aatgtaactaaatatgtcggggtcatttaggtgtcaaatatcaa |
140 |
Q |
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| T |
4570452 |
aatgtaactaaatgtatcggggtcgtttaggtgtcaaatatcaa |
4570495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 4607099 - 4607040
Alignment:
| Q |
175 |
atcccttgaattcaattggagaagatcaatgggtcaatataatactgcattgcataaaaa |
234 |
Q |
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||||||| |||||||| ||| ||||||||||| |||| |||||| | ||||||||||||| |
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| T |
4607099 |
atcccttaaattcaataggaaaagatcaatggatcaacataataatacattgcataaaaa |
4607040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 4556557 - 4556605
Alignment:
| Q |
101 |
taactaaatatgtcggggtcatttaggtgtcaaatatcaatgtgtgtcg |
149 |
Q |
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| T |
4556557 |
taactaaatgtgtcggggtcgtttaggtttcaaatatcaacatgtgtcg |
4556605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 6736451 - 6736511
Alignment:
| Q |
26 |
aaacatggacactagacacgacaatgacactgacatgtcgacacctgcaataatttgagaa |
86 |
Q |
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| T |
6736451 |
aaacacggacactagacatgacaaagacactgacacgtcgacaccggtaataatttgagaa |
6736511 |
T |
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