View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_high_56 (Length: 226)
Name: NF20435_high_56
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_56 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 16686249 - 16686413
Alignment:
| Q |
24 |
ggtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgt |
123 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
16686249 |
ggtcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaagataattgaactgcaaatgaaggtggacgaagacccgagacctggtggttgt |
16686348 |
T |
|
| Q |
124 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16686349 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
16686413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 20863829 - 20863989
Alignment:
| Q |
28 |
aatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcat |
127 |
Q |
| |
|
|||||| |||| |||||||||||||||| || ||||| | |||||| || ||| |||||| |||||| || || ||||||||||| | ||| |||||| |
|
|
| T |
20863829 |
aatgaattgatggtgggagagaaaggaaggaggatgaggcaaaagacaaatgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcat |
20863928 |
T |
|
| Q |
128 |
acatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
188 |
Q |
| |
|
| ||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||| |
|
|
| T |
20863929 |
atatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagtgac |
20863989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 1674374 - 1674226
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||| ||||||| | ||||| || ||| |||||| |||||| || || |||| ||||| ||||||||||| |
|
|
| T |
1674374 |
tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggaattgaagaagaaggcagaggagaacactagaccaggtggttgttc |
1674275 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||||||||||||||| |||||||||| ||| || ||||||||||||||| |
|
|
| T |
1674274 |
atacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat |
1674226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 28)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 4557275 - 4557111
Alignment:
| Q |
24 |
ggtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgt |
123 |
Q |
| |
|
|||||||||| |||| | ||| |||||||||||||||||| ||||||||||||||| |||||| |||||| || || ||||| ||||||||||||||| |
|
|
| T |
4557275 |
ggtcaatgaattgatggagggggagaaaggaaagaagatgtggaaaaagataattgagatgaagacgaaggcggaggaggacacgagacctggtggttgt |
4557176 |
T |
|
| Q |
124 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
188 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4557175 |
tcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgac |
4557111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 4571122 - 4570958
Alignment:
| Q |
24 |
ggtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgt |
123 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||||||| |||||| ||||| || |||||| |||||| || || ||||| ||||||||||||||| |
|
|
| T |
4571122 |
ggtcaatgaattgatggtgggagataaaggaaagaagatgaggaaaaatataatggagatgaagaagaaggcggaggaggacacgagacctggtggttgt |
4571023 |
T |
|
| Q |
124 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
188 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4571022 |
tcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacacctaagtgac |
4570958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 4585786 - 4585628
Alignment:
| Q |
24 |
ggtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgt |
123 |
Q |
| |
|
|||||||||| |||| ||||||||||| ||||||||||||| | ||||| ||| || |||||| |||||| || || ||||| |||||||| |||||| |
|
|
| T |
4585786 |
ggtcaatgaattgatggtgggagagaatggaaagaagatgaggcaaaaggcaatcgagttgaagaagaaggcggaggaggacacgagacctggaggttgt |
4585687 |
T |
|
| Q |
124 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaaccta |
182 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4585686 |
tcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaaccta |
4585628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 4480841 - 4480693
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||| ||||| || || |||||| || ||| || || ||||||||||||||||||||||| |
|
|
| T |
4480841 |
tcaatgaattgttggtgggagagaaaggaaagaagatgaagcaaaaggccatggagttgaagaagatggcagaggaggacacaagacctggtggttgttc |
4480742 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| ||||||||||||||| |
|
|
| T |
4480741 |
atacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat |
4480693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 4504383 - 4504523
Alignment:
| Q |
28 |
aatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcat |
127 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| | ||||| || || |||||| |||||| || || |||||||||| |||||||||||||| |
|
|
| T |
4504383 |
aatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggccatggagttgaagaagaaggcagaggaggacacaagacttggtggttgttcat |
4504482 |
T |
|
| Q |
128 |
acatgaacttggaaaaagtgattatggaggttttgcttaaa |
168 |
Q |
| |
|
||||||||||||| |||||||||| ||| || ||||||||| |
|
|
| T |
4504483 |
acatgaacttggacaaagtgattaaggacgtcttgcttaaa |
4504523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 4579578 - 4579418
Alignment:
| Q |
28 |
aatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcat |
127 |
Q |
| |
|
|||||| |||| ||||||||||||| ||||||||||| | ||||| |||||| |||||| ||||| || || ||||| |||||||| || ||||||| |
|
|
| T |
4579578 |
aatgaattgatggtgggagagaaagcaaagaagatgaggcaaaaggcaattgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcat |
4579479 |
T |
|
| Q |
128 |
acatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
188 |
Q |
| |
|
||||||||||||| |||||||||| |||||| || || |||||||||| ||| |||||||| |
|
|
| T |
4579478 |
acatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcgaacttaagtgac |
4579418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 4592379 - 4592227
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| ||||||| ||| || |||||| |||||| || || |||| |||||||| |||||||| |
|
|
| T |
4592379 |
tcaatgaattgatggtgggagagaaaggaaagaagatgaggaaaaaggcaatcgagttgaagaagaaggcagaggagaacacgagacctggaggttgttc |
4592280 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaa |
178 |
Q |
| |
|
||| ||||||||||| ||| |||| | |||||| ||||||||| ||||||||| |
|
|
| T |
4592279 |
atatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa |
4592227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 4606958 - 4607037
Alignment:
| Q |
109 |
agacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac |
188 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
4606958 |
agaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgac |
4607037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 4516469 - 4516321
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| | || |||||||| |||||||||||||||| | ||||| || ||| |||||| |||||| || || ||||||||||| ||||||||||| |
|
|
| T |
4516469 |
tcaatgaattaatggtgggagataaaggaaagaagatgaggcaaaaggccatggaattgaagaagaaggcagaggaggacacaagaccaggtggttgttc |
4516370 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||| ||||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
4516369 |
atatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaat |
4516321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 4613700 - 4613855
Alignment:
| Q |
24 |
ggtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgt |
123 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| |||| | ||||| |||||| |||||| |||||| || || ||||| ||||| || |||||| |
|
|
| T |
4613700 |
ggtcaatgaattgatggtgggagagaaaggaaagaaaatgaggcaaaaggcaattgagttgaagaagaaggcagaggaggacacgagaccaggaggttgt |
4613799 |
T |
|
| Q |
124 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaac |
179 |
Q |
| |
|
||||| ||||||||||| |||||||| | ||||| |||| |||||||||||||| |
|
|
| T |
4613800 |
tcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaac |
4613855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 4563842 - 4563708
Alignment:
| Q |
43 |
ggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcatacatgaacttggaaa |
142 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||| |||||| ||| | || ||| |||| ||| |||| ||||||||||||||||||||||| | |
|
|
| T |
4563842 |
ggagagaaaggaaagaagatgcggcaaaaggcaattgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggaca |
4563743 |
T |
|
| Q |
143 |
aagtgattatggaggttttgcttaaacaaaatcaa |
177 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |
|
|
| T |
4563742 |
aagtgatcaaggaggttttgcttaaacaaaatcaa |
4563708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 171
Target Start/End: Complemental strand, 3171889 - 3171744
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||| | ||| | || || |||||| |||||| || || || |||||| |||||||||||| |
|
|
| T |
3171889 |
tcaacgaattgatggtgggagagaaaggaaagaagatgaggcaaagggccatggagttgaagaagaaggcagaggaggatacaagatttggtggttgttc |
3171790 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
||||||||||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
3171789 |
atacatgaacttggataaagtgattaaggaggtcttgcttaaacaa |
3171744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 104 - 185
Target Start/End: Complemental strand, 4560576 - 4560495
Alignment:
| Q |
104 |
acacaagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagt |
185 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||| |
|
|
| T |
4560576 |
acacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagt |
4560495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 4598303 - 4598166
Alignment:
| Q |
42 |
gggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcatacatgaacttggaa |
141 |
Q |
| |
|
|||||| ||||||||||| |||| | |||||| |||||| ||||||||||||| || || || || |||| ||| |||||||||||||||||||| || |
|
|
| T |
4598303 |
gggagataaaggaaagaaaatgaggcaaaagacaattgatttgaagatgaaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagag |
4598204 |
T |
|
| Q |
142 |
aaagtgattatggaggttttgcttaaacaaaatcaaac |
179 |
Q |
| |
|
|||||||||| |||||| || |||||||| |||||||| |
|
|
| T |
4598203 |
aaagtgattaaggaggtgtttcttaaacagaatcaaac |
4598166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 4267149 - 4267295
Alignment:
| Q |
25 |
gtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgtt |
124 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| | ||||||| |||| | | || |||||| |||||| || || |||||||||||||||||| || |
|
|
| T |
4267149 |
gtcaatgaattgatggtgggagagaaaggaaatatgatgaagcaaaatgtcttggagttgaagaggaaggcagaagagaacacaagacctggtggttttt |
4267248 |
T |
|
| Q |
125 |
catacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
4267249 |
catacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
4267295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 4515104 - 4515253
Alignment:
| Q |
25 |
gtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgtt |
124 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| || |||| ||||||| | || || |||| | |||||| ||||| ||||| |||| ||| || | || |
|
|
| T |
4515104 |
gtcaatgaattgatggtgggagagaaaggaaataaaatgaggaaaaaggttatggagttgaaaaagaaggcagacgaggacactagacttggcgggtctt |
4515203 |
T |
|
| Q |
125 |
catacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||||| |||||||||| |||||||| | |||||| ||||||||||||||| |
|
|
| T |
4515204 |
catacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat |
4515253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 4505988 - 4505857
Alignment:
| Q |
43 |
ggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcatacatgaacttggaaa |
142 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| | || || |||| | || ||| | || || |||||||||||||||||||||| |||||||||||| | |
|
|
| T |
4505988 |
ggagagaaaggaaacaagatgaggaaaaaggtcatggagttgaaaaagagggcaaaggaggatacaagacctggtggttgttcattcatgaacttggaca |
4505889 |
T |
|
| Q |
143 |
aagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||| |
|
|
| T |
4505888 |
aagttattaaggaggtgttgcttaaacaaaat |
4505857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 177
Target Start/End: Complemental strand, 4574439 - 4574305
Alignment:
| Q |
43 |
ggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttcatacatgaacttggaaa |
142 |
Q |
| |
|
||||| |||||||||||||||| | |||| ||||| ||||||| ||||| || | ||||| |||||||| ||||||||||||| |||||||| | |
|
|
| T |
4574439 |
ggagataaaggaaagaagatgaggcaaaaagccattgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggaga |
4574340 |
T |
|
| Q |
143 |
aagtgattatggaggttttgcttaaacaaaatcaa |
177 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||| |
|
|
| T |
4574339 |
aagtgattaaggaggtgttgcttaaacaaaatcaa |
4574305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 174
Target Start/End: Complemental strand, 4617170 - 4617022
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||| |||||| ||||| || || |||||| |||||| || || |||| ||||| ||||||||||| |
|
|
| T |
4617170 |
tcaatgaagtgatagccggagataaaggaaagaaaatgaagcaaaaggccatggagttgaagaagaaggcagaggagaacactagaccaggtggttgttc |
4617071 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||||||||||||| | ||||| |||| ||| || ||||||||||||||| |
|
|
| T |
4617070 |
atacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat |
4617022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 174
Target Start/End: Complemental strand, 4493039 - 4492955
Alignment:
| Q |
90 |
gaaggccgacgaagacacaagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
|||||| || || |||||| |||||||||||||||||||||||||||||| |||||||| | ||| || ||||||||||||||| |
|
|
| T |
4493039 |
gaaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat |
4492955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 168
Target Start/End: Original strand, 4490339 - 4490481
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| | ||||| | || |||||| |||||| | || ||||| |||| |||||| |||| |
|
|
| T |
4490339 |
tcaatgaattgatggtgggagagaaaggaaagaagatgaggcaaaaggcgacggagttgaagaagaaggcagcggaggacacgagactcggtggtagttc |
4490438 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaa |
168 |
Q |
| |
|
||||||||||||||| |||||||||| ||| || |||||||| |
|
|
| T |
4490439 |
atacatgaacttggacaaagtgattaaggatgtcatgcttaaa |
4490481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 4392087 - 4392154
Alignment:
| Q |
103 |
gacacaagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaaca |
170 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||||| ||| |||||| |||||| ||||||||||| |
|
|
| T |
4392087 |
gacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca |
4392154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 4299813 - 4299869
Alignment:
| Q |
115 |
ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| |||| ||||||| ||||||||||| |
|
|
| T |
4299813 |
ggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaa |
4299869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 4568124 - 4568076
Alignment:
| Q |
103 |
gacacaagacctggtggttgttcatacatgaacttggaaaaagtgatta |
151 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||| |||||||||| |
|
|
| T |
4568124 |
gacacaagacctggtgattcttcatacatgaacttggacaaagtgatta |
4568076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 4469952 - 4469809
Alignment:
| Q |
25 |
gtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgtt |
124 |
Q |
| |
|
||||||||| |||| || |||||||| ||||||||||||| | ||||||| || || | |||| ||||| || || || || |||||||| ||| || |
|
|
| T |
4469952 |
gtcaatgaattgatggttggagagaatggaaagaagatgagggaaaagatcatggagttcaagaagaaggtggaggaggataccagacctggaggtgttt |
4469853 |
T |
|
| Q |
125 |
catacatgaacttggaaaaagtgattatggaggttttgcttaaa |
168 |
Q |
| |
|
|||||| ||||||||| ||||| |||| ||| || ||||||||| |
|
|
| T |
4469852 |
catacaagaacttggacaaagtcattaaggatgtcttgcttaaa |
4469809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 4601848 - 4601789
Alignment:
| Q |
115 |
ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||| |||| |||||| ||||||||||||||| |
|
|
| T |
4601848 |
ggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat |
4601789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 174
Target Start/End: Complemental strand, 4461273 - 4461123
Alignment:
| Q |
24 |
ggtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgt |
123 |
Q |
| |
|
|||||| ||| |||| || ||||||| ||||||||||||| | ||||| | || ||| | |||| ||||| || || || || |||||||| ||| | |
|
|
| T |
4461273 |
ggtcaacgaattgatggttggagagattggaaagaagatgaggcaaaaggtcatggaattcaagaagaaggtggaggaggataccagacctggaggtgtt |
4461174 |
T |
|
| Q |
124 |
tcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||||||| ||||||||| ||||| |||| ||| || ||||||||||||||| |
|
|
| T |
4461173 |
tcatacaagaacttggacaaagtcattaaggatgtcttgcttaaacaaaat |
4461123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 4622204 - 4622145
Alignment:
| Q |
112 |
cctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
4622204 |
cctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa |
4622145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 24103148 - 24103002
Alignment:
| Q |
25 |
gtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgtt |
124 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | || | |||| |||||| || || |||||||| ||||||||| || |
|
|
| T |
24103148 |
gtcaatgaattgatggtgggagagaacggaaagacgatgaagcaaaaggtcttggagttcaagaagaaggcagaagagaacacaagatctggtggttttt |
24103049 |
T |
|
| Q |
125 |
catacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||| ||||||||||| |
|
|
| T |
24103048 |
catacatgaacttggacaaagttattaaggaggtcatgcttaaacaa |
24103002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 28000083 - 28000231
Alignment:
| Q |
26 |
tcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgttc |
125 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||| ||||||| | ||||| || || |||||| ||||| || || |||| ||||| ||||||||||| |
|
|
| T |
28000083 |
tcaatgaattgatggtgggagagaatggaaaaaagatgaggcaaaaggccatggagttgaagaaaaaggcagaggagaacactagaccaggtggttgttc |
28000182 |
T |
|
| Q |
126 |
atacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
||||||||||||||| |||||||||| ||| || ||| ||||||||||| |
|
|
| T |
28000183 |
atacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat |
28000231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 3702 - 3848
Alignment:
| Q |
25 |
gtcaatgaactgatagtgggagagaaaggaaagaagatgaagaaaaagataattgaactgaagatgaaggccgacgaagacacaagacctggtggttgtt |
124 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||| | ||||| | || | |||| |||||| || || |||| ||||| |||||| ||| |
|
|
| T |
3702 |
gtcaatgaattgacggtgggagagaaaggaaagaagatgaggcaaaaggccgtggagttaaagaagaaggcagaggagaacactagaccaggtggtcgtt |
3801 |
T |
|
| Q |
125 |
catacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
||||||||||| |||| ||||| |||| ||||||||||||||||||| |
|
|
| T |
3802 |
catacatgaacctggacaaagttattaaggaggttttgcttaaacaa |
3848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 4757 - 4815
Alignment:
| Q |
113 |
ctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaa |
171 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
4757 |
ctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa |
4815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 1281184 - 1281114
Alignment:
| Q |
104 |
acacaagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaat |
174 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| || |||||||||| ||| | ||||||||||||||| |
|
|
| T |
1281184 |
acactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat |
1281114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
| Q |
115 |
ggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaa |
168 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| |
|
|
| T |
3086479 |
ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa |
3086426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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