View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_high_7 (Length: 534)
Name: NF20435_high_7
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 4310793 - 4311132
Alignment:
| Q |
19 |
taatcatcatgcttgtttcattaaattccaggttgtgcattctaagaccttttctttttaataacacaactcttatactattaaatgtatccgttattgt |
118 |
Q |
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| T |
4310793 |
taatcatcatgcttgtttcattaaattccagggtgtgcattctaagaccttttctttttaataacgcaactcttatactattaaatgtatacgttatcgt |
4310892 |
T |
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| Q |
119 |
ccactaagtgaataaaattcactttcgatacgacatctctaaatgcaactccctctagagttttatgatttgtttccaaaatttgattcaagtagtctaa |
218 |
Q |
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| T |
4310893 |
ccactaagtgaataaaattcactttcgatacgacatctctaaatgcaactccctctagagttttatgatttgtctccaaaatttgattcaagtagtctaa |
4310992 |
T |
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| Q |
219 |
tccaaagacaattacagaaattggtttcacaagacccttnnnnnnnnnctacgagtgtaactagaactagctgcaaaactgggtccgtccagctctttac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4310993 |
tccaaagacaattacagaaattggtttcacaagacccttaaaagaaaactacgagtgtaactagaactagctgcaaaactgggtccgtccagctctttac |
4311092 |
T |
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| Q |
319 |
tcattcacaactgataacttatatgcaatatatgtaccaa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
4311093 |
tcattcacaactgataacttatatgcaatatatgtaccaa |
4311132 |
T |
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