View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_low_1 (Length: 754)
Name: NF20435_low_1
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 714; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 12 - 737
Target Start/End: Original strand, 39933987 - 39934712
Alignment:
| Q |
12 |
agcacagatgcaatgtatgtcacaaataatctacatcaagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39933987 |
agcacagatgcaatgtatgtcacaaataatctacatccagaaactgaatttaggaactagattgagagaaaggtactgaagaaattaatgacaatttatg |
39934086 |
T |
|
| Q |
112 |
atttctcatctaagtgaaaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934087 |
atttctcatctaagtgacaatgtgacatcatacatgtatttatagctacatagatgtgtaacagtactctaactaactttctacattggtttactaactg |
39934186 |
T |
|
| Q |
212 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934187 |
taactaattacaacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttt |
39934286 |
T |
|
| Q |
312 |
tcatagaatgtaggagagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcata |
411 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934287 |
tcatagaatgtaggagagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcata |
39934386 |
T |
|
| Q |
412 |
tttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttca |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934387 |
tttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttca |
39934486 |
T |
|
| Q |
512 |
tcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgc |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39934487 |
tcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgc |
39934586 |
T |
|
| Q |
612 |
tcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaacca |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934587 |
tcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaacca |
39934686 |
T |
|
| Q |
712 |
taacacggacatggaaacattatatg |
737 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39934687 |
taacacggacatggaaacattatatg |
39934712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 395 - 723
Target Start/End: Complemental strand, 39704652 - 39704324
Alignment:
| Q |
395 |
tcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaacct |
494 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
39704652 |
tcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaacct |
39704553 |
T |
|
| Q |
495 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaat |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
39704552 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattgaaat |
39704453 |
T |
|
| Q |
595 |
cattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacact |
694 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704452 |
cattgcagttgatgtgatcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacact |
39704353 |
T |
|
| Q |
695 |
aattgtggaaaaaaccataacacggacat |
723 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
39704352 |
aattgtggaaacaaccataacacagacat |
39704324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 406 - 734
Target Start/End: Complemental strand, 39695732 - 39695404
Alignment:
| Q |
406 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgattt |
505 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39695732 |
ttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgattt |
39695633 |
T |
|
| Q |
506 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttg |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39695632 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttg |
39695533 |
T |
|
| Q |
606 |
atgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaa |
705 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39695532 |
atgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaa |
39695433 |
T |
|
| Q |
706 |
aaaccataacacggacatggaaacattat |
734 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
39695432 |
caaccataacacagacatggaaacattat |
39695404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 373 - 731
Target Start/End: Original strand, 39928701 - 39929059
Alignment:
| Q |
373 |
catttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaac |
472 |
Q |
| |
|
|||||||||| | ||| ||| ||||||| || |||||| ||||||| | ||| || | ||| |||||||||||||| ||| | || | | ||||||| |
|
|
| T |
39928701 |
catttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtaggactaac |
39928800 |
T |
|
| Q |
473 |
atccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaag |
572 |
Q |
| |
|
||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |
|
|
| T |
39928801 |
atccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgtaaaaag |
39928900 |
T |
|
| Q |
573 |
caattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagc |
672 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39928901 |
caacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaacgc |
39929000 |
T |
|
| Q |
673 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacat |
731 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||||| |
|
|
| T |
39929001 |
ttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaacat |
39929059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 598 - 723
Target Start/End: Original strand, 38061603 - 38061728
Alignment:
| Q |
598 |
tgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaat |
697 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
|
|
| T |
38061603 |
tgcagttgatgtgctcttcagtgactgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaat |
38061702 |
T |
|
| Q |
698 |
tgtggaaaaaaccataacacggacat |
723 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
38061703 |
tgtggaaacaaacataacacagacat |
38061728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 573
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
497 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
573 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 583 - 658
Target Start/End: Complemental strand, 4847209 - 4847134
Alignment:
| Q |
583 |
aagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtcca |
658 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || | ||||||||||||||| || || |||||||||| |||| |
|
|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgtaacttctcca |
4847134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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