View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_12 (Length: 443)

Name: NF20435_low_12
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_12
NF20435_low_12
[»] chr6 (17 HSPs)
chr6 (91-443)||(1607844-1608181)
chr6 (103-408)||(4856822-4857102)
chr6 (103-414)||(11550180-11550466)
chr6 (20-98)||(1607642-1607720)
chr6 (20-98)||(4856574-4856652)
chr6 (20-98)||(11550633-11550711)
chr6 (226-378)||(27434744-27434894)
chr6 (103-180)||(27434521-27434598)
chr6 (244-357)||(4749496-4749607)
chr6 (236-376)||(32681435-32681572)
chr6 (103-149)||(12514982-12515028)
chr6 (295-376)||(21992546-21992628)
chr6 (97-199)||(21992698-21992799)
chr6 (103-145)||(7823322-7823364)
chr6 (126-183)||(10195677-10195734)
chr6 (171-199)||(13705584-13705612)
chr6 (171-199)||(33452411-33452439)
[»] chr8 (42 HSPs)
chr8 (103-443)||(23136396-23136715)
chr8 (109-200)||(45531709-45531800)
chr8 (226-378)||(18666831-18666982)
chr8 (20-98)||(23136839-23136917)
chr8 (236-365)||(287367-287494)
chr8 (226-378)||(23160995-23161143)
chr8 (226-380)||(45250934-45251086)
chr8 (245-378)||(8362365-8362496)
chr8 (102-199)||(772660-772757)
chr8 (236-356)||(10895909-10896027)
chr8 (108-175)||(16251635-16251702)
chr8 (226-328)||(45531609-45531709)
chr8 (226-378)||(23689091-23689241)
chr8 (20-98)||(45531312-45531390)
chr8 (103-199)||(13402060-13402157)
chr8 (349-443)||(45531516-45531614)
chr8 (245-365)||(27521104-27521222)
chr8 (97-156)||(35135739-35135799)
chr8 (245-376)||(12167116-12167246)
chr8 (245-376)||(12411544-12411674)
chr8 (34-98)||(25064308-25064372)
chr8 (34-98)||(35137042-35137106)
chr8 (245-365)||(16291970-16292087)
chr8 (48-98)||(8351540-8351590)
chr8 (245-357)||(17894982-17895090)
chr8 (20-98)||(18667164-18667242)
chr8 (32-98)||(23160734-23160800)
chr8 (20-98)||(45250704-45250782)
chr8 (227-325)||(17890863-17890960)
chr8 (98-181)||(25063053-25063135)
chr8 (96-186)||(21580974-21581064)
chr8 (236-273)||(25113397-25113434)
chr8 (34-98)||(8362667-8362731)
chr8 (171-199)||(10894547-10894575)
chr8 (171-199)||(15605369-15605397)
chr8 (171-199)||(15624251-15624279)
chr8 (171-199)||(15624434-15624462)
chr8 (171-199)||(15648039-15648067)
chr8 (171-199)||(15648222-15648250)
chr8 (171-199)||(16250411-16250439)
chr8 (171-199)||(25063975-25064003)
chr8 (171-199)||(35136706-35136734)
[»] chr2 (16 HSPs)
chr2 (102-443)||(41747297-41747616)
chr2 (236-365)||(45049539-45049666)
chr2 (226-378)||(21119886-21120037)
chr2 (96-186)||(23258341-23258431)
chr2 (103-186)||(36721983-36722066)
chr2 (231-440)||(16311477-16311685)
chr2 (20-98)||(41747740-41747818)
chr2 (103-196)||(20103328-20103421)
chr2 (226-378)||(20103540-20103691)
chr2 (245-378)||(24972127-24972263)
chr2 (245-327)||(5243246-5243326)
chr2 (48-98)||(20103876-20103926)
chr2 (102-183)||(44748186-44748267)
chr2 (96-149)||(5244800-5244853)
chr2 (286-378)||(16139381-16139471)
chr2 (97-181)||(26249626-26249711)
[»] chr5 (6 HSPs)
chr5 (96-373)||(9662957-9663210)
chr5 (226-378)||(27588653-27588804)
chr5 (20-98)||(9662706-9662784)
chr5 (237-365)||(19205851-19205976)
chr5 (245-328)||(29857745-29857826)
chr5 (20-96)||(27588971-27589047)
[»] scaffold0059 (4 HSPs)
scaffold0059 (95-443)||(67058-67377)
scaffold0059 (95-443)||(75163-75482)
scaffold0059 (20-98)||(66859-66937)
scaffold0059 (20-98)||(74964-75042)
[»] chr4 (13 HSPs)
chr4 (103-443)||(35647903-35648217)
chr4 (236-365)||(24026-24153)
chr4 (226-378)||(18066663-18066813)
chr4 (251-366)||(14288096-14288208)
chr4 (97-183)||(292560-292645)
chr4 (103-180)||(18066959-18067036)
chr4 (96-183)||(14275727-14275821)
chr4 (256-365)||(13914686-13914793)
chr4 (59-98)||(14252905-14252944)
chr4 (236-266)||(13914744-13914774)
chr4 (236-264)||(10780355-10780383)
chr4 (236-264)||(10973964-10973992)
chr4 (171-199)||(37069772-37069800)
[»] chr3 (21 HSPs)
chr3 (226-443)||(20919298-20919513)
chr3 (226-443)||(20928260-20928475)
chr3 (110-443)||(37197768-37198069)
chr3 (245-378)||(2765960-2766090)
chr3 (20-98)||(37198166-37198244)
chr3 (226-378)||(50246533-50246684)
chr3 (236-353)||(6440819-6440934)
chr3 (20-98)||(20919634-20919712)
chr3 (20-98)||(20928596-20928674)
chr3 (244-366)||(9270698-9270817)
chr3 (104-187)||(20919202-20919284)
chr3 (104-187)||(20928164-20928246)
chr3 (287-376)||(20795286-20795375)
chr3 (287-376)||(30160569-30160658)
chr3 (35-98)||(50246299-50246362)
chr3 (245-357)||(6445126-6445234)
chr3 (48-98)||(20783743-20783793)
chr3 (48-98)||(38353822-38353872)
chr3 (245-352)||(37187491-37187596)
chr3 (97-199)||(30160404-30160507)
chr3 (96-183)||(42392264-42392351)
[»] chr7 (5 HSPs)
chr7 (229-374)||(7946423-7946567)
chr7 (226-378)||(29494016-29494165)
chr7 (20-98)||(29494326-29494404)
chr7 (20-98)||(7946185-7946263)
chr7 (171-199)||(7946572-7946600)
[»] chr1 (12 HSPs)
chr1 (226-378)||(22544097-22544247)
chr1 (236-366)||(46514413-46514541)
chr1 (226-378)||(15535168-15535318)
chr1 (245-378)||(45915019-45915151)
chr1 (234-365)||(11440862-11440991)
chr1 (245-365)||(8313970-8314088)
chr1 (244-329)||(3417360-3417443)
chr1 (287-376)||(19095450-19095539)
chr1 (20-98)||(45915313-45915391)
chr1 (103-146)||(3417245-3417288)
chr1 (236-266)||(8314028-8314058)
chr1 (171-199)||(15535320-15535348)
[»] scaffold0003 (2 HSPs)
scaffold0003 (226-378)||(52469-52619)
scaffold0003 (103-180)||(52765-52842)
[»] scaffold0018 (2 HSPs)
scaffold0018 (236-365)||(67191-67318)
scaffold0018 (233-266)||(67249-67282)
[»] scaffold0155 (2 HSPs)
scaffold0155 (226-376)||(26698-26847)
scaffold0155 (20-98)||(26994-27072)
[»] scaffold0289 (1 HSPs)
scaffold0289 (236-366)||(22067-22194)
[»] scaffold0216 (3 HSPs)
scaffold0216 (226-379)||(18074-18227)
scaffold0216 (20-98)||(18391-18469)
scaffold0216 (34-98)||(25588-25652)
[»] scaffold0022 (1 HSPs)
scaffold0022 (236-365)||(101142-101270)
[»] scaffold0490 (2 HSPs)
scaffold0490 (230-376)||(9194-9339)
scaffold0490 (171-199)||(9160-9188)
[»] scaffold0061 (1 HSPs)
scaffold0061 (96-149)||(34811-34864)
[»] scaffold0017 (1 HSPs)
scaffold0017 (96-149)||(163916-163969)
[»] scaffold0169 (1 HSPs)
scaffold0169 (122-196)||(24412-24486)
[»] scaffold0011 (1 HSPs)
scaffold0011 (97-183)||(18778-18864)
[»] scaffold0200 (1 HSPs)
scaffold0200 (96-149)||(3093-3146)


Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 91 - 443
Target Start/End: Complemental strand, 1608181 - 1607844
Alignment:
Q  91 tttgatatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatca 190  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1608181 tttgaaatctttatctttattataaagatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatca 1608082  T
Q  191 tccaatcaatccaatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagtttt 290  Q
    ||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1608081 tccaatcaatccaatcaaattgaattataact----------------catttattttttattagccaatcaaaatgattcatgacacatttatagtttt 1607998  T
Q  291 catcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctcc 390  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1607997 catcagccaatcaaaattgatcatgtcatgatttttttccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctcc 1607898  T
Q  391 ataaacaaattcataaaataaaaatattt--tgtgttttaaaagcatggaagttt 443  Q
    |||||||||||||||||| |||| |||||  ||||||||||||||||||||||||    
T  1607897 ataaacaaattcataaaa-aaaagtattttctgtgttttaaaagcatggaagttt 1607844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 103 - 408
Target Start/End: Complemental strand, 4857102 - 4856822
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaatcc 202  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||         |||    
T  4857102 atctttattataatcatttcccctattttattttgatagtacacgtggcaaccttatattgaaaggtgcatttaatgttttcttatca---------tcc 4857012  T
Q  203 aatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatc 302  Q
    |||||||||||||||| ||||||||                ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4857011 aatcaaattgaattatgactcattt----------------attttttattaaccaatcaaaatgattcatgacacatttatagttttcatcagccaatc 4856928  T
Q  303 aaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattc 402  Q
    ||||||||||||||   |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4856927 aaaattgatcatgtctagatttttttcactatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattc 4856828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 103 - 414
Target Start/End: Original strand, 11550180 - 11550466
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaatcc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||         ||||    
T  11550180 atctttattataaacatttcccctattttattttgatagtacacgtggcaactttatattgaaaggtgcatttaatgttttcttatc---------atcc 11550270  T
Q  203 aatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatc 302  Q
    ||| ||||| |||||| ||||||||                ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11550271 aattaaattaaattatgactcattt----------------attttttattaaccaatcaaaatgattcatgacacatttatagttttcatcagccaatc 11550354  T
Q  303 aaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattc 402  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11550355 aaaattgatcatgtcttgatttttttccctatatattgacaatttgtttttcattgttttcatatatctcttccccatctcttcctccataaacaaattc 11550454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 1607720 - 1607642
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1607720 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctagacaatgttttgtatttgatat 1607642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 4856652 - 4856574
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4856652 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtcgaggcaatgttttgtatttgatat 4856574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 11550633 - 11550711
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11550633 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtcgaggcaatgttttgtatttgatat 11550711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 27434744 - 27434894
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||||||| |||||||||||||||||||||||||||| |||   |||||| ||||||  ||||||| || ||||||||||||||| |   |||||||||    
T  27434744 ttgaattatgactcatttattttttattagccaatcaagatggaccatgactcattta--gttttcaccaaccaatcaaaattgattacacaatgatttt 27434841  T
Q  326 ttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |  | || ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  27434842 tgtctctgtatatagacaatttgtttttcattattttcatgtgtctcttcccc 27434894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 27434521 - 27434598
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgt 180  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||    
T  27434521 atctctattataaacatttcccttattttattttgatagtatatgtggcaagcttatattgaaaggtgcagttaatgt 27434598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 4749496 - 4749607
Alignment:
Q  244 attttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgaca 343  Q
    ||||||| |||| |||||||||    ||||||| |||||||  |||| || |||||||||||||||||||||  |||||||||| |  |||||||  |||    
T  4749496 attttttcttagtcaatcaaaagagatcatgactcatttat--tttttatgagccaatcaaaattgatcatgacatgatttttttctatatatataaaca 4749593  T
Q  344 atttgtttttcatt 357  Q
    ||||||||||||||    
T  4749594 atttgtttttcatt 4749607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 32681435 - 32681572
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||||||||||||| |||| |||  ||||||| ||||||| ||||||  ||||||| ||   ||||||||||||| |||  |||||| |||   |||||    
T  32681435 actcatttattttttcttagacaaa-aaaatgaatcatgactcattta--gttttcaccattaaatcaaaattgattatgccatgattattttttctata 32681531  T
Q  336 tattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
    ||| |||||||| ||||||||| ||||||| ||| ||||||    
T  32681532 tatagacaatttatttttcattattttcatgtgtttcttcc 32681572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 12514982 - 12515028
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtg 149  Q
    |||||||||||||| |||||| |||||||||||||||| ||||||||    
T  12514982 atctttattataaatatttcctctattttattttgatattacacgtg 12515028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 21992628 - 21992546
Alignment:
Q  295 agccaatcaaaattgatcatgtaatgattttttccc-ctatatattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
    ||||||||||||| |||||||  ||||||||||    |||||||| |||||||||||||||||| ||||||| | ||||||||    
T  21992628 agccaatcaaaatggatcatgatatgattttttttttctatatatagacaatttgtttttcattattttcatctatctcttcc 21992546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 21992799 - 21992698
Alignment:
Q  97 atctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaat 196  Q
    |||||||||||||||||| | |||| | ||||||| |||| | |||||||||||||| ||||||||        ||||||||||||||||||||||||||    
T  21992799 atctttatctttattatatatatttgcgctatttt-tttttaaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaat 21992701  T
Q  197 caa 199  Q
    |||    
T  21992700 caa 21992698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 145
Target Start/End: Original strand, 7823322 - 7823364
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtaca 145  Q
    |||| |||||||||||||| || ||||||||||||||||||||    
T  7823322 atctctattataaacattttccttattttattttgatagtaca 7823364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 10195734 - 10195677
Alignment:
Q  126 tattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtttt 183  Q
    ||||||||||| ||||||||| |||||||||| | || | ||| ||||||||||||||    
T  10195734 tattttattttaatagtacacatggcaaccttttgttcataggagcatttaatgtttt 10195677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 13705612 - 13705584
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  13705612 catttaatgttttcttatcatccaatcaa 13705584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 33452439 - 33452411
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  33452439 catttaatgttttcttatcatccaatcaa 33452411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 175; Significance: 5e-94; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 103 - 443
Target Start/End: Original strand, 23136396 - 23136715
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaatcc 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||||||         |||    
T  23136396 atctttattataaacatttcccctattttattttgatagtagacgtgacaaccttatattgaaaggtacatttaatgttttcttatca---------tcc 23136486  T
Q  203 aatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatc 302  Q
    |||||||||||||||| ||||||||                ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  23136487 aatcaaattgaattatgactcattt----------------attttttattagccaatcaaaatgattcatgacac-tttatagttttcatcagccagtc 23136569  T
Q  303 aaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattc 402  Q
    ||||||||||||||  |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23136570 aaaattgatcatgtcgtgattttttccc-tatatattgaaaatttgtttttcattgttttcttatgtctcttccccatctcttcctccataaacaaattc 23136668  T
Q  403 ataaaataaaa------atattttgtgttttaaaagcatggaagttt 443  Q
    |||||| ||||      ||||| ||||||||||||||||||||||||    
T  23136669 ataaaaaaaaaaaaagtatattctgtgttttaaaagcatggaagttt 23136715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 45531800 - 45531709
Alignment:
Q  109 attataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaat 200  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  45531800 attataaatattttccctattttattttgatagtacacgtggcaaccttatattgaaaggtgcatttgatgttttcttatcatcaaatcaat 45531709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 18666831 - 18666982
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||  |||||| ||||||  |||||||||| ||||||||||| |||||||   ||||||    
T  18666831 ttgaattatgactcattcatttttttattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaatggatcatgccttgattt 18666928  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||| |||||||||| | |||||||||||||||| ||||||| ||||||||||||    
T  18666929 ttttccctatatataggcaatttgtttttcattattttcatgtgtctcttcccc 18666982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 23136839 - 23136917
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  23136839 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtcgagacaatgttttgtatttgatat 23136917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 287367 - 287494
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||  |||| || |||||||||||||||||||||  || |||||||  ||||||    
T  287367 actcatttattttttattagccaatcaaaatggatcatgactcatttat--tttttattagccaatcaaaattgatcatgacataattttttttcctata 287464  T
Q  336 tattgacaatttgtttttcattgttttcat 365  Q
    ||| ||||| |||||||||||| |||||||    
T  287465 tatagacaaattgtttttcattattttcat 287494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 23161143 - 23160995
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    |||||| || |||||||| ||||||||||| |||||||||||| ||||||||||||  ||||||||||  ||||||||||||||||||||  || |||||    
T  23161143 ttgaatcatgactcatttcttttttattagtcaatcaaaatgaatcatgacacatt--tagttttcataggccaatcaaaattgatcatgccataatttt 23161046  T
Q  326 ttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    || ||||| | ||  ||||||| ||||||||| ||||||||||||||||||||    
T  23161045 tt-ccctagaaataaacaattt-tttttcattattttcatatgtctcttcccc 23160995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 226 - 380
Target Start/End: Complemental strand, 45251086 - 45250934
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||||| ||||||| ||||| ||||  |||||| ||||||  |||||||||| |||||||||||||||||||   ||||||    
T  45251086 ttgaattatgactcattcatttttttattagccgatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattt 45250989  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccat 380  Q
    ||| || ||||||| |||||||||||||||||| ||||||| ||||||| ||||||    
T  45250988 ttttcc-tatatatagacaatttgtttttcattattttcatgtgtctctcccccat 45250934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 378
Target Start/End: Original strand, 8362365 - 8362496
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    ||||||||||||||||||| ||||  |||||| ||||||  |||||||||| |||||||||||||||||||   ||||||||| || ||||||| |||||    
T  8362365 ttttttattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgatttttttccttatatatagacaa 8362462  T
Q  345 tttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||||||||||||| |||| ||  |||||||||||    
T  8362463 tttgtttttcattatttttatgggtctcttcccc 8362496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 102 - 199
Target Start/End: Complemental strand, 772757 - 772660
Alignment:
Q  102 tatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaa 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| || ||||||||||||  ||||||| |||||||    
T  772757 tatctctattataaacatttcccctattttattttgatagtacacgtggcagcctaatattgaaatgttcatttaatgtttctttatcattcaatcaa 772660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 236 - 356
Target Start/End: Original strand, 10895909 - 10896027
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    |||||||||||||||||||| |||||||||||  ||||||| |||||||  ||||||| |||||||||||||||||||||  ||||||||||  | ||||    
T  10895909 actcatttattttttattagtcaatcaaaatggatcatgactcatttat--ttttcattagccaatcaaaattgatcatgacatgattttttttcttata 10896006  T
Q  336 tattgacaatttgtttttcat 356  Q
    ||| ||||| |||||||||||    
T  10896007 tatagacaaattgtttttcat 10896027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 16251635 - 16251702
Alignment:
Q  108 tattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcattt 175  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  16251635 tattataaacatttcccctattttattttgatagtacacgtgacaaccttatattaaaatgtgcattt 16251702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 328
Target Start/End: Complemental strand, 45531709 - 45531609
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||  ||||||||  |||||||||||||||||| | || ||||||||    
T  45531709 ttgaattatgactcatttattttttattagtcaatcaaaatgattcatggcacatt--tagttttctccagccaatcaaaattgattacgtcatgatttt 45531612  T
Q  326 ttc 328  Q
    |||    
T  45531611 ttc 45531609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 23689241 - 23689091
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||||| ||||| ||||||| ||||   ||||| ||||||  |||||||||| |||||||||||||||||||   ||||||    
T  23689241 ttgaattatgactcattcatttttttattagtcaatcaagatgaactatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattt 23689144  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||| || |||||||  ||||||||||||||||| ||||||| ||||||||||||    
T  23689143 ttttcc-tatatataaacaatttgtttttcattattttcatgtgtctcttcccc 23689091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 45531390 - 45531312
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||| |||||||||||| || ||||||||||||||| |||||||| || |||||||||||||||||||||||    
T  45531390 gtgtctatattcttcgacttcaagacgttcaaaatcagcaatataatttttattcgaggcaatgttttgtatttgatat 45531312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 13402060 - 13402157
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttct-tatcatccaatcaa 199  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||| ||| || ||||||||||||| | ||||||||||||||    
T  13402060 atctctattataaacatttcccctattttatttggatagtacacggggcagcctaatattgaaatgttcatttaatgttttttctatcatccaatcaa 13402157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 45531614 - 45531516
Alignment:
Q  349 tttttcattgttttcatatgtctcttccccatctct---tcctccataaacaaattcataaaataaa-aatattttgtgttttaaaagcatggaagttt 443  Q
    ||||||||| ||||||||||||||||||||||||||   |||||||||||||||||||||| | |||  || || ||||||||||||||||||||||||    
T  45531614 tttttcattattttcatatgtctcttccccatctctttctcctccataaacaaattcataagagaaagtattttatgtgttttaaaagcatggaagttt 45531516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 27521222 - 27521104
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||||||| ||||||||||||||  |||||||  |||| |  ||||||| |||||||||||||||| ||||| ||||||||||  |||||| || || ||    
T  27521222 ttttttatcagccaatcaaaatggatcatgactaatttct--ttttcatgagccaatcaaaattgaccatgtcatgattttttttcctatacatagataa 27521125  T
Q  345 tttgtttttcattgttttcat 365  Q
    ||||||||||||| |||||||    
T  27521124 tttgtttttcattattttcat 27521104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 35135739 - 35135799
Alignment:
Q  97 atctttatctttattataaacatttcccctatttta-ttttgatagtacacgtggcaacct 156  Q
    |||||||||| |||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  35135739 atctttatctctattataaacatttgcactattttatttttgatagtacacgtggcaacct 35135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 12167246 - 12167116
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||| ||||| ||||||||||||  ||||||| |||||||  ||||||| ||||||||||||||||||||   |||||||||| | ||||||||  ||||    
T  12167246 ttttctattatccaatcaaaatggatcatgactcatttat--ttttcatgagccaatcaaaattgatcataacatgatttttt-cactatatataaacaa 12167150  T
Q  345 tttg--tttttcattgttttcatatgtctcttcc 376  Q
    ||||  ||||| ||| ||||||| | ||||||||    
T  12167149 tttggtttttttattattttcatctatctcttcc 12167116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 12411674 - 12411544
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||| ||||| ||||||||||||  ||||||| |||||||  ||||||| ||||||||||||||||||||   |||||||||| | ||||||||  ||||    
T  12411674 ttttctattatccaatcaaaatggatcatgactcatttat--ttttcatgagccaatcaaaattgatcataacatgatttttt-cactatatataaacaa 12411578  T
Q  345 tttg--tttttcattgttttcatatgtctcttcc 376  Q
    ||||  ||||| ||| ||||||| | ||||||||    
T  12411577 tttggtttttttattattttcatctatctcttcc 12411544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 25064308 - 25064372
Alignment:
Q  34 cgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||  | |||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  25064308 cgacttcaagatgttcaacatcaacaatataatttttagtcaaggcaatgttttgtatttgatat 25064372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 35137042 - 35137106
Alignment:
Q  34 cgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||  | |||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  35137042 cgacttcaagatgttcaacatcaacaatataatttttagtcaaggcaatgttttgtatttgatat 35137106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 365
Target Start/End: Original strand, 16291970 - 16292087
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||||||||| ||||||||||||  ||||||| |||||||  ||||||| || |||||||||||||||||   |||||||||  | ||||||||  ||||    
T  16291970 ttttttattatccaatcaaaatggatcatgactcatttat--ttttcatgagtcaatcaaaattgatcataacatgattttt--cactatatataaacaa 16292065  T
Q  345 tttg-tttttcattgttttcat 365  Q
    |||| ||||| ||| |||||||    
T  16292066 tttgattttttattattttcat 16292087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 8351540 - 8351590
Alignment:
Q  48 tcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  8351540 tcaacatcaacaatataatttttagtcaaggcaatgttttgtatttgatat 8351590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 17895090 - 17894982
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||||| ||||||||||||||    ||||||| |||||||  |||| || |||||||||||||||||||||  ||| ||||||   ||||||||  ||||    
T  17895090 ttttttcttagccaatcaaaagagatcatgactcatttat--tttttatgagccaatcaaaattgatcatgacatgctttttt--tctatatataaacaa 17894995  T
Q  345 tttgtttttcatt 357  Q
    |||||||||||||    
T  17894994 tttgtttttcatt 17894982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 18667164 - 18667242
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||||||||| || |||| |||| ||||| ||||||||||| || ||| ||||||||||||||||    
T  18667164 gtgtctacattttacgacttcaagacgttcaacatcaacaatataatttttagtcgagacaaggttttgtatttgatat 18667242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 23160800 - 23160734
Alignment:
Q  32 ttcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||||||  ||||||||||||||| || ||| |||| | ||| |||||||||||||||||    
T  23160800 ttcgacttcaaggcattcaaaatcagcaatataaatttaagtcaaagcattgttttgtatttgatat 23160734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 45250782 - 45250704
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||||||||| || |||| |||| ||||| ||||||||||| || ||| ||||||||||||||||    
T  45250782 gtgtctacattctacgacttcaagacgttcaacatcaacaatataatttttagtcaagacaacgttttgtatttgatat 45250704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 325
Target Start/End: Complemental strand, 17890960 - 17890863
Alignment:
Q  227 tgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||| || ||||||||||||||| ||||||||||||| | |   |||||| ||||||  ||||||| |||||||||||||||||| | | |||||||||    
T  17890960 tgaatgatgactcatttatttttttattagccaatcaagacggaccatgactcattta--gttttcaccagccaatcaaaattgattacgcaatgatttt 17890863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 25063053 - 25063135
Alignment:
Q  98 tctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtt 181  Q
    ||||||||||||||||| |||||| | ||||||| |||| | |||||||||||||||||  || | |||||  |||||||||||    
T  25063053 tctttatctttattatatacatttgcgctatttt-ttttaaaagtacacgtggcaacctattagtgaaaggatcatttaatgtt 25063135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 21580974 - 21581064
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttctt 186  Q
    ||||||||||||||||||| |||||  | ||||||| |||| | ||| ||||||||||| ||| | | | |||||||| |||| |||||||    
T  21580974 tatctttatctttattatatacattggcgctatttttttttaaaagtgcacgtggcaactttacaatgataggtgcatctaatattttctt 21581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 25113434 - 25113397
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcat 273  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  25113434 actcatttatttttcattagccaatcaaaatgaatcat 25113397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 8362667 - 8362731
Alignment:
Q  34 cgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||||| ||| || |||| |||| ||||| ||||||||||| ||  |||||||||||||||||||    
T  8362667 cgacttgaagacgttcaacatcaacaatataatttttagtcaagataatgttttgtatttgatat 8362731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 10894547 - 10894575
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  10894547 catttaatgttttcttatcatccaatcaa 10894575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 15605397 - 15605369
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  15605397 catttaatgttttcttatcatccaatcaa 15605369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 15624279 - 15624251
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  15624279 catttaatgttttcttatcatccaatcaa 15624251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 15624462 - 15624434
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  15624462 catttaatgttttcttatcatccaatcaa 15624434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 15648067 - 15648039
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  15648067 catttaatgttttcttatcatccaatcaa 15648039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 15648250 - 15648222
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  15648250 catttaatgttttcttatcatccaatcaa 15648222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 16250411 - 16250439
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  16250411 catttaatgttttcttatcatccaatcaa 16250439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 25063975 - 25064003
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  25063975 catttaatgttttcttatcatccaatcaa 25064003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 35136706 - 35136734
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  35136706 catttaatgttttcttatcatccaatcaa 35136734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 4e-88; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 102 - 443
Target Start/End: Original strand, 41747297 - 41747616
Alignment:
Q  102 tatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaatc 201  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||         ||    
T  41747297 tatctttattataaacattttccctattttattttgatagtacatgtggcaaccttatattgaaaggtgcatttaatgttttattatca---------tc 41747387  T
Q  202 caatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagtttt-catcagccaa 300  Q
    ||||||||||||||||| ||| ||||                |||||||||||| ||||||||||||||||||| || ||||||||||| |||| | |||    
T  41747388 caatcaaattgaattatgacttattt----------------attttttattagtcaatcaaaatgattcatgatac-tttatagtttttcatcggtcaa 41747470  T
Q  301 tcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaat 400  Q
    |||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41747471 tcaaaattgatcatgtcatgatttttttcc-tatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaat 41747569  T
Q  401 tcataaaataaaa----atattttgtgttttaaaagcatggaagttt 443  Q
    |||||||| ||||    ||||| ||||||||||||||||||||||||    
T  41747570 tcataaaaaaaaaaagtatattctgtgttttaaaagcatggaagttt 41747616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 45049539 - 45049666
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||||||| ||||||||||||||||||||||  ||||||| |||||||  ||||||| |||||||||||||||||||||  ||||||||||  ||||||    
T  45049539 actcatttaatttttattagccaatcaaaatggatcatgactcatttat--ttttcattagccaatcaaaattgatcatgacatgattttttttcctata 45049636  T
Q  336 tattgacaatttgtttttcattgttttcat 365  Q
    ||| ||||| |||||||||||| |||||||    
T  45049637 tatagacaaattgtttttcattattttcat 45049666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 21119886 - 21120037
Alignment:
Q  226 ttgaattataactcatttatttt-ttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||| ||||||||||||||| ||||  |||||| ||||||  ||||| |||| ||||| |||||||||||||   ||||||    
T  21119886 ttgaattatgactcattcattttattattagccaatcaagatgaaccatgactcattta--gtttttatcaaccaattaaaattgatcatgctttgattt 21119983  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |||  ||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  21119984 tttttcctatatatagacaatttgtttttcattattttcatgtgtctcttcccc 21120037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 23258341 - 23258431
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttctt 186  Q
    ||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  23258341 tatctctatctctattataaatatttcccctaatttattttgatagtacacgtggctaccttatattgaaaggtgcatttaatgttttctt 23258431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 103 - 186
Target Start/End: Original strand, 36721983 - 36722066
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttctt 186  Q
    |||| ||||||||||||||  |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  36721983 atctctattataaacatttttcctattttattttgatagtacacgtgacaaccttatattgaaaggtgcatttaatgttttctt 36722066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 231 - 440
Target Start/End: Complemental strand, 16311685 - 16311477
Alignment:
Q  231 ttataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttccc 330  Q
    |||| ||||||||||||||||||||  ||||||||||  ||||||| ||||||   |||| ||||||||||||||||| ||||||  |||||||||| ||    
T  16311685 ttatgactcatttattttttattagttaatcaaaatggatcatgactcatttaa--tttttatcagccaatcaaaatttatcatgccatgatttttttcc 16311588  T
Q  331 ctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctctt-cctccataaacaaattcataaaataaaaatattt--tgtgtttt 427  Q
    |||||||| |||| ||   |||||||| ||||||| ||||| || ||| |||||| || ||||||| || ||||||||| |||  |||||  ||||||||    
T  16311587 ctatatatagacatttaacttttcattattttcatgtgtct-tttcccgtctcttccccccataaaaaatttcataaaa-aaaggtattttatgtgtttt 16311490  T
Q  428 aaaagcatggaag 440  Q
    |||||||||||||    
T  16311489 aaaagcatggaag 16311477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 41747740 - 41747818
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  41747740 gtgtctatattatttgacttcaaggcgctcaaaatcaacaataccatttttagtcgaggcaatgttttgtatttgatat 41747818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 20103328 - 20103421
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaat 196  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||  || |||||||| |||||||||||||||||||| |||||| |||||    
T  20103328 atctctattataaacatttcccttattttattttgatagtacacgtgagaagcttatattgaaaggtgcatttaatgtttttttatcaaccaat 20103421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 20103540 - 20103691
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||||||||||| ||||||||||||| |||   |||||| ||||||  ||||||| ||  |||||||||||||| |   ||||||||    
T  20103540 ttgaattatgactcatttatttttttattagccaatcaagatggaccatgactcattta--gttttcaccaatcaatcaaaattgattacacaatgattt 20103637  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||  | |||||||| |||| ||||||||||||| ||||||| ||||||||||||    
T  20103638 ttctctctatatatagacactttgtttttcattattttcatgtgtctcttcccc 20103691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 24972263 - 24972127
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttttt-----cccctatatatt 339  Q
    ||||||||||| ||||||| ||||  |||||| ||||||  |||||||||| |||||||||||||||||||   |||||||||       || ||||||     
T  24972263 ttttttattagtcaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattttttttttcttccaatatata 24972166  T
Q  340 gacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  24972165 gacaatttgtttttcattattttcatgtgtctcttcccc 24972127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 327
Target Start/End: Complemental strand, 5243326 - 5243246
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttttt 327  Q
    |||| ||||| ||||||||||||  ||||||| |||||||  ||||||| ||||||||||||||||||||   ||||||||||    
T  5243326 ttttctattatccaatcaaaatggatcatgactcatttat--ttttcatgagccaatcaaaattgatcataacatgatttttt 5243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 20103876 - 20103926
Alignment:
Q  48 tcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  20103876 tcaacatcaacaatataatttttagtcaaggcaatgttttgtatttgatat 20103926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 44748186 - 44748267
Alignment:
Q  102 tatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtttt 183  Q
    ||||| ||| || |||||||||| | |||||||||||||||||||||| |||  ||||||| ||||||  ||||| ||||||    
T  44748186 tatctctatcattaacatttcccttcttttattttgatagtacacgtgacaaaattatattgaaaggtatatttattgtttt 44748267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 5244853 - 5244800
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtg 149  Q
    ||||||||||||||||||| | |||| | |||||||||||| | ||||||||||    
T  5244853 tatctttatctttattatatatatttgcactattttattttaaaagtacacgtg 5244800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 378
Target Start/End: Original strand, 16139381 - 16139471
Alignment:
Q  286 gttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||||||| || |||||||||||||||||||  |||||||||  | || | ||| |||| ||||||||||||| ||| |||  |||||||||||    
T  16139381 gttttcaccaaccaatcaaaattgatcatgccatgattttt--ctctgtgtatagacactttgtttttcattatttccatgcgtctcttcccc 16139471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 26249711 - 26249626
Alignment:
Q  97 atctttatctttattataaacatttccccta-ttttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtt 181  Q
    |||||||||||||||||| |||||| | ||| |||| |||| | ||||||||||||||| | ||| | |||||  |||||||||||    
T  26249711 atctttatctttattatatacatttgcgctattttttttttaaaagtacacgtggcaacttaatagtgaaaggatcatttaatgtt 26249626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 6e-84; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 96 - 373
Target Start/End: Complemental strand, 9663210 - 9662957
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaa 195  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         
T  9663210 tatctttatctttattataaacattttccctattttattttgatagtacacgtgacaaccttatattaaaaggtgcatttaatgttttcttatca----- 9663116  T
Q  196 tcaatccaatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatca 295  Q
        ||||||||||||||||||| ||||||||                |||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  9663115 ----tccaatcaaattgaattatgactcattt----------------attttttattagccaatcaaaatgattcataacacatttctagttttcatca 9663036  T
Q  296 gccaatcaaaattgatcatgtaatga-ttttttcccctatatattgacaatttgtttttcattgttttcatatgtctct 373  Q
    |||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9663035 gccaatcaaaattgttcatgtcatgatttttttcccctatatattgacaatttgtttttcattgttttcatatgtctct 9662957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 27588653 - 27588804
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||||  |||||| ||||||  |||||||||| |||||||||||||||||||   ||||||    
T  27588653 ttgaattatgactcatttatttttttattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattt 27588750  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |||  || |||||| |||||||||||||||||| ||||||| ||||||||||||    
T  27588751 tttttccaatatatagacaatttgtttttcattattttcatgtgtctcttcccc 27588804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 9662784 - 9662706
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9662784 gtgtctatattattcgacttcaagatgctcaaaatcagcaatacaatttttagtcgaggcaatgttttgtatttgatat 9662706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 237 - 365
Target Start/End: Complemental strand, 19205976 - 19205851
Alignment:
Q  237 ctcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatat 336  Q
    |||| ||||||| |||||||||||| |||||  ||||||| ||| |||  ||||||| |||||||||||||||||||| | ||||||||||  |||||||    
T  19205976 ctcacttattttatattagccaatctaaatggatcatgactcatctat--ttttcatgagccaatcaaaattgatcatatcatgatttttt-tcctatat 19205880  T
Q  337 attgacaatttgtttttcattgttttcat 365  Q
    || || ||||||||||||||| |||||||    
T  19205879 atagataatttgtttttcattattttcat 19205851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 29857745 - 29857826
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttc 328  Q
    |||| ||||| ||||||||||||  ||||||| |||||||  ||||||| || |||||||||||||||||   |||||||||||    
T  29857745 ttttctattatccaatcaaaatggatcatgactcatttat--ttttcatgagtcaatcaaaattgatcataacatgattttttc 29857826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 27588971 - 27589047
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgat 96  Q
    ||||||| ||| | |||||||||| || | || |||| ||||| |||||||| || || ||||||||||||||||||    
T  27588971 gtgtctacattctacgacttcaagacgttgaacatcaacaatataatttttaatcaagacaatgttttgtatttgat 27589047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 95 - 443
Target Start/End: Complemental strand, 67377 - 67058
Alignment:
Q  95 atatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatcca 194  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||           
T  67377 atatctttatctttattataaacatttgcactatttt-ttttgaaagtacacatggcaaccttatattgaaaggtgcatttaatgttttctta------- 67286  T
Q  195 atcaatccaatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatc 294  Q
      | || ||||||||||||||||| |||                |||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |    
T  67285 --ccattcaatcaaattgaattatgact----------------catttattttttattagccaatcaaaatgatttatgacacatt--tagttttcacc 67206  T
Q  295 agccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataa 394  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  67205 agccaatcaaaattgatcatgtcatg-tttttttccctatatatttacaatttgtttttcattattttcatatgtctcttccccatc-cttcctccataa 67108  T
Q  395 acaaattcataaaataaa-aatattttgtgttttaaaagcatggaagttt 443  Q
    |||||||||||||| |||  || || ||||||||||||||||||||||||    
T  67107 acaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttt 67058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 95 - 443
Target Start/End: Complemental strand, 75482 - 75163
Alignment:
Q  95 atatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatcca 194  Q
    ||||||||||||||||||||||||||| | ||||||| |||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||           
T  75482 atatctttatctttattataaacatttgcactatttt-ttttgaaagtacacatggcaaccttatattgaaaggtgcatttaatgttttctta------- 75391  T
Q  195 atcaatccaatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatc 294  Q
      | || ||||||||||||||||| |||                |||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |    
T  75390 --ccattcaatcaaattgaattatgact----------------catttattttttattagccaatcaaaatgatttatgacacatt--tagttttcacc 75311  T
Q  295 agccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataa 394  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  75310 agccaatcaaaattgatcatgtcatg-tttttttccctatatatttacaatttgtttttcattattttcatatgtctcttccccatc-cttcctccataa 75213  T
Q  395 acaaattcataaaataaa-aatattttgtgttttaaaagcatggaagttt 443  Q
    |||||||||||||| |||  || || ||||||||||||||||||||||||    
T  75212 acaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttt 75163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 66937 - 66859
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||| |||||||||||| || ||||||||||||||| | ||||||||| |||||||||||||||||| ||||    
T  66937 gtgtctatattcttcgacttcaagacgttcaaaatcagcaatatagtttttagtcgaggcaatgttttgtattttatat 66859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 75042 - 74964
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||| |||||||||||| || ||||||||||||||| | ||||||||| |||||||||||||||||| ||||    
T  75042 gtgtctatattcttcgacttcaagacgttcaaaatcagcaatatagtttttagtcgaggcaatgttttgtattttatat 74964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 4e-79; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 103 - 443
Target Start/End: Original strand, 35647903 - 35648217
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaatcc 202  Q
    |||| |||||||| ||||| ||||||||||||||||||||||| | | |||||||||||| |||| |||||||||| |||||||||||         |||    
T  35647903 atctctattataagcattttccctattttattttgatagtacatgagacaaccttatattgaaagatgcatttaatattttcttatca---------tcc 35647993  T
Q  203 aatcaaattgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatc 302  Q
    |||||||||||||||| ||| ||||                |||||||||||||||||||||||||||||| |||||||||  |||||||  ||||||||    
T  35647994 aatcaaattgaattatgacttattt----------------attttttattagccaatcaaaatgattcataacacattta--gttttcactagccaatc 35648075  T
Q  303 aaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattc 402  Q
    ||||||| |||||| ||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35648076 aaaattgttcatgtcatgattttttttcctatatattgacaatttgtttttcattattttcatatgtctcttccccatctcttcctccataaacaaattc 35648175  T
Q  403 ataaaataaa-aatattttgtgttttaaaagcatggaagttt 443  Q
    |||||| ||| ||| || ||||||||||||||||||||||||    
T  35648176 ataaaagaaagaattttctgtgttttaaaagcatggaagttt 35648217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 24153 - 24026
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||||||||||||||||||||||||||||||  | ||||| |||||||  ||||||| |||||||||||||||||||||  ||||||||||  ||||||    
T  24153 actcatttattttttattagccaatcaaaatggataatgactcatttat--ttttcattagccaatcaaaattgatcatgacatgattttttttcctata 24056  T
Q  336 tattgacaatttgtttttcattgttttcat 365  Q
    ||| ||||| |||||||||||| |||||||    
T  24055 tatagacaaattgtttttcattattttcat 24026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 18066813 - 18066663
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||||||| |||||||||||||||||||||||||||| |||   |||||| ||||||  ||||||| || ||||||||||||||| |   |||||||||    
T  18066813 ttgaattatgactcatttattttttattagccaatcaagatggaccatgactcattta--gttttcaccaaccaatcaaaattgattacacaatgatttt 18066716  T
Q  326 ttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |  | || ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  18066715 tgtctctgtatatagacaatttgtttttcattattttcatgtgtctcttcccc 18066663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 366
Target Start/End: Complemental strand, 14288208 - 14288096
Alignment:
Q  251 attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtt 350  Q
    |||||||||||||||||| ||||||| |||||||  ||||||| |||||||||||||||||||||  |||| ||||||||||||||||  |||| ||| |    
T  14288208 attagccaatcaaaatgaatcatgactcatttat--ttttcattagccaatcaaaattgatcatgacatga-tttttcccctatatatacacaacttggt 14288112  T
Q  351 tttcattgttttcata 366  Q
    ||||||| ||||||||    
T  14288111 tttcattattttcata 14288096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 292645 - 292560
Alignment:
Q  97 atctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtttt 183  Q
    |||||||||||||||||| | |||| | ||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||    
T  292645 atctttatctttattatatatatttacgctatttttttttta-agtacacgtggcagccttatattaaaaggtgcatttaatgtttt 292560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 18067036 - 18066959
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgt 180  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||    
T  18067036 atctctattataaacatttcccttattttattttgatagtatatgtggcaagcttatattgaaaggtgcagttaatgt 18066959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 14275727 - 14275821
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacg-------tggcaaccttatattaaaaggtgcatttaatgtttt 183  Q
    ||||| ||||| |||||||||||||||| |||||||||||||| ||||||||       || |||||||||||| ||||||||||||||||||||    
T  14275727 tatctctatctctattataaacatttcctctattttattttgacagtacacgtgacaactgacaaccttatattgaaaggtgcatttaatgtttt 14275821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 13914793 - 13914686
Alignment:
Q  256 ccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttca 355  Q
    |||||||||||   ||||||| |||||||  |||| || ||||||||||||||||||||   ||||||||||  ||||||||| ||||| ||||||||||    
T  13914793 ccaatcaaaatagatcatgactcatttat--tttttattagccaatcaaaattgatcattacatgattttttttcctatatatagacaaattgtttttca 13914696  T
Q  356 ttgttttcat 365  Q
    || |||||||    
T  13914695 ttattttcat 13914686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 98
Target Start/End: Complemental strand, 14252944 - 14252905
Alignment:
Q  59 aatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||| ||||||||||| |||||||||||||||||||||||    
T  14252944 aatataatttttagtcaaggcaatgttttgtatttgatat 14252905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 266
Target Start/End: Complemental strand, 13914774 - 13914744
Alignment:
Q  236 actcatttattttttattagccaatcaaaat 266  Q
    |||||||||||||||||||||||||||||||    
T  13914774 actcatttattttttattagccaatcaaaat 13914744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 10780355 - 10780383
Alignment:
Q  236 actcatttattttttattagccaatcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  10780355 actcatttattttttattagccaatcaaa 10780383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 10973964 - 10973992
Alignment:
Q  236 actcatttattttttattagccaatcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  10973964 actcatttattttttattagccaatcaaa 10973992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 37069800 - 37069772
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  37069800 catttaatgttttcttatcatccaatcaa 37069772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 6e-78; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 20919298 - 20919513
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||| ||||    
T  20919298 ttgaattatgactcatttattttttattagccaatcaaaatgattcatgacacattta--gttttcaccagccaatcaaaattgatcatgtcatgttttt 20919395  T
Q  326 ttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattcataaaataaa-aatattttgtgt 424  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||  || || |||||    
T  20919396 ttccc-tatatattgacaatttgtttttctttattttcatatgtctcttccccatcccttcctccataaacaaattcataaaagaaagtattttctgtgt 20919494  T
Q  425 tttaaaagcatggaagttt 443  Q
    |||||||||||||||||||    
T  20919495 tttaaaagcatggaagttt 20919513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 226 - 443
Target Start/End: Original strand, 20928260 - 20928475
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||| ||| ||||    
T  20928260 ttgaattatgactcatttattttttattagccaatcaaaatgattcatgacacattta--gttttcaccagccaatcaaaattgatcatgtcatgttttt 20928357  T
Q  326 ttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattcataaaataaa-aatattttgtgt 424  Q
    ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||| |||  || || |||||    
T  20928358 ttccc-tatatattgacaatttgtttttctttattttcatatgtctcttccccatcccttcctccataaacaaattcataaaagaaagtattttctgtgt 20928456  T
Q  425 tttaaaagcatggaagttt 443  Q
    |||||||||||||||||||    
T  20928457 tttaaaagcatggaagttt 20928475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 110 - 443
Target Start/End: Original strand, 37197768 - 37198069
Alignment:
Q  110 ttataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaatcaatccaatcaaa 209  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||         ||||||||||    
T  37197768 ttataaacatttcccctattttattttgatagtacatgtggcaaccttatattgaaagttgcatttaatgttttcttatca---------tccaatcaaa 37197858  T
Q  210 ttgaattataactcatttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattg 309  Q
    ||||||||| ||||                ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  37197859 ttgaattatgactc----------------atttattttttattaaccaatcaaaatgattcatgacacatt--tagttttcatcagccaatcaaaattg 37197940  T
Q  310 atcatgtaatga-ttttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttccccatctcttcctccataaacaaattcataaaa 408  Q
    ||||||| |||| |||||| |||||||||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||||||||||    
T  37197941 atcatgtcatgattttttttccctatatattgacaatttgcttttcat----------tgtctcttccccatctcttcctccataaacaaattcataaaa 37198030  T
Q  409 taaaaa--tattt--tgtgttttaaaagcatggaagttt 443  Q
     |||||  |||||  ||||||||||||||||||||||||    
T  37198031 aaaaaaagtattttctgtgttttaaaagcatggaagttt 37198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 245 - 378
Target Start/End: Complemental strand, 2766090 - 2765960
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    ||||||||||| ||||||| ||||  ||| || ||||||  |||||||||| ||||||||||||||||||||  ||||||||| || ||||||| |||||    
T  2766090 ttttttattagtcaatcaagatgaaccataactcattta--gttttcatcaaccaatcaaaattgatcatgtcttgatttttttcc-tatatatagacaa 2765994  T
Q  345 tttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||||||||||||| ||||||| ||||||||||||    
T  2765993 tttgtttttcattattttcatgtgtctcttcccc 2765960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 37198166 - 37198244
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||||||||||||||||||| ||||||||  ||||||||||||||||| |||||||||||||||||||||||    
T  37198166 gtgtctatattattcgacttcaaggcgttcaaaatctacaatacaatttttagtcgaggcaatgttttgtatttgatat 37198244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 50246684 - 50246533
Alignment:
Q  226 ttgaattataactcatttatttttt--attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatt 323  Q
    ||||||||| ||||||| |||||||  ||||||||||||| ||||  |||||| ||||||  |||||||||| |||||||||| ||||||||   |||||    
T  50246684 ttgaattatgactcattcattttttttattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaagtgatcatgccttgatt 50246587  T
Q  324 ttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |||| || ||||||| |||||||||||||||||| ||||||| || |||||||||    
T  50246586 tttttcc-tatatatagacaatttgtttttcattattttcatgtgactcttcccc 50246533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 6440934 - 6440819
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||| |||||||||||| |||||||||||||| ||||||| |||||||  ||||||| || |||| |||||||||||||  |||||||||| |||||||    
T  6440934 actcaattattttttatttgccaatcaaaatgaatcatgactcatttat--ttttcattagtcaattaaaattgatcatgacatgatttttttccctata 6440837  T
Q  336 tattgacaatttgttttt 353  Q
    ||| ||||| ||| ||||    
T  6440836 tatagacaacttgatttt 6440819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 20919634 - 20919712
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||| |||||||||||| || ||||||||||||||| | ||||||||| |||||||||||||||||| ||||    
T  20919634 gtgtctatattcttcgacttcaagacgttcaaaatcagcaatatagtttttagtcgaggcaatgttttgtattttatat 20919712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 20928596 - 20928674
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||||| |||||||||||| || ||||||||||||||| | ||||||||| |||||||||||||||||| ||||    
T  20928596 gtgtctatattcttcgacttcaagacgttcaaaatcagcaatatagtttttagtcgaggcaatgttttgtattttatat 20928674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 366
Target Start/End: Complemental strand, 9270817 - 9270698
Alignment:
Q  244 attttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgaca 343  Q
    |||||||||| |||||| ||||| | ||||||| |||||||  ||||||| ||||||| |||||||||||||  ||||||||||  ||||||||| ||||    
T  9270817 attttttatttgccaattaaaataaatcatgactcatttat--ttttcattagccaattaaaattgatcatgacatgatttttt-tcctatatatagaca 9270721  T
Q  344 atttgtttttcattgttttcata 366  Q
    | ||| |||||||| ||||||||    
T  9270720 acttgcttttcattattttcata 9270698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 20919202 - 20919284
Alignment:
Q  104 tctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttctta 187  Q
    |||||||||||||||||| | ||||||| |||| | ||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  20919202 tctttattataaacatttgcactatttttttttaa-agtacacatggcaaccttatattgaaagatgcatttaatgttttctta 20919284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 20928164 - 20928246
Alignment:
Q  104 tctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttctta 187  Q
    |||||||||||||||||| | ||||||| |||| | ||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  20928164 tctttattataaacatttgcactatttttttttaa-agtacacatggcaaccttatattgaaagatgcatttaatgttttctta 20928246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 20795375 - 20795286
Alignment:
Q  287 ttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
    ||||||| |||||||||||||  ||||||  ||||||||||   |||||||| |||||||||||||||||| ||||||| | ||||||||    
T  20795375 ttttcatgagccaatcaaaatgaatcatgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcc 20795286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 30160569 - 30160658
Alignment:
Q  287 ttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
    ||||||| ||||||||||||| |||||||  ||||||||||   |||||||| |||||||| ||||||||| ||||||| | ||||||||    
T  30160569 ttttcatgagccaatcaaaatggatcatgatatgatttttttttctatatatagacaatttatttttcattattttcatctatctcttcc 30160658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 50246362 - 50246299
Alignment:
Q  35 gacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||||| || |||| |||| ||||| ||||||||||| || ||||||||||||||||||||    
T  50246362 gacttcaagacgttcaacatcaacaatataatttttagtcaagacaatgttttgtatttgatat 50246299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 357
Target Start/End: Complemental strand, 6445234 - 6445126
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||||| ||||||||||||||    ||||||| |||||||  |||| || |||||||||||||||||||||  ||| ||||||   ||||||||  ||||    
T  6445234 ttttttcttagccaatcaaaagagatcatgactcatttat--tttttatgagccaatcaaaattgatcatgacatgctttttt--tctatatataaacaa 6445139  T
Q  345 tttgtttttcatt 357  Q
    |||||||||||||    
T  6445138 tttgtttttcatt 6445126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Complemental strand, 20783793 - 20783743
Alignment:
Q  48 tcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  20783793 tcaacatcaacaatataatttttagtcaaggcaatgttttgtatttgatat 20783743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 38353822 - 38353872
Alignment:
Q  48 tcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||| |||| ||||| ||||||||||| |||||||||||||||||||||||    
T  38353822 tcaacatcaacaatataatttttagtcaaggcaatgttttgtatttgatat 38353872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 352
Target Start/End: Original strand, 37187491 - 37187596
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||||| ||||||||||||||    ||| ||| |||||||  |||| || |||||||||||||||||||||  ||||||||||   ||||||||  ||||    
T  37187491 ttttttcttagccaatcaaaagagatcacgactcatttat--tttttatgagccaatcaaaattgatcatgacatgatttttttttctatatataaacaa 37187588  T
Q  345 tttgtttt 352  Q
    ||||||||    
T  37187589 tttgtttt 37187596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 199
Target Start/End: Original strand, 30160404 - 30160507
Alignment:
Q  97 atctttatctttattataaacatttcccctattttattttgata-gtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaa 195  Q
    |||||||||||||||||| | |||| | ||||||| |||| | | ||||||||||||| ||||||||        |||||||||||||||||||||||||    
T  30160404 atctttatctttattatatatatttgcgctatttttttttaaaaagtacacgtggcaagcttatattctccatctcatttaatgttttcttatcatccaa 30160503  T
Q  196 tcaa 199  Q
    ||||    
T  30160504 tcaa 30160507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 42392264 - 42392351
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtttt 183  Q
    ||||||||||||||||||| | |||| | ||||||| |||| | ||||||| |||||  ||||||||   |||| |||||||||||||    
T  42392264 tatctttatctttattatatatatttgcactatttttttttaaaagtacacatggcatgcttatattgttaggtacatttaatgtttt 42392351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 229 - 374
Target Start/End: Complemental strand, 7946567 - 7946423
Alignment:
Q  229 aattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttttt 327  Q
    |||||| ||||||| ||||||| ||||||||||||| ||||  |||||| ||||||  |||||||||| ||||||||||| ||||||||  |||||||||    
T  7946567 aattatgactcattcatttttttattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaatggatcatgttttgatttttt 7946470  T
Q  328 cccctatatattgacaatttgtttttcattgttttcatatgtctctt 374  Q
     |||||||||| |||||||||||||||||| ||||||| ||||||||    
T  7946469 tccctatatatagacaatttgtttttcattattttcatgtgtctctt 7946423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 226 - 378
Target Start/End: Original strand, 29494016 - 29494165
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||||| ||||||||||||| |||| ||||||| ||||||  |||||||||| |||||||||||||||||||   | ||||    
T  29494016 ttgaattatgactcattcatttttttattagccaatcaagatgaatcatgactcattta--gttttcatcaaccaatcaaaattgatcatg-ccttattt 29494112  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||    
T  29494113 ttt-ccctatatatagacaatttgtttttcattattttcatttgtctcttcccc 29494165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 29494326 - 29494404
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||||||||| || |||| |||| ||||| ||||||||||| || ||||||||| ||||||||||    
T  29494326 gtgtctacattctacgacttcaagacgttcaacatcaacaatataatttttagtcaagacaatgttttttatttgatat 29494404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 7946263 - 7946185
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||| ||||| || |||  |||| ||||| ||||||||||| || ||||||||||||||||||||    
T  7946263 gtgtctacattctacgacatcaagacgttcagcatcaacaatataatttttagtcaagacaatgttttgtatttgatat 7946185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 7946600 - 7946572
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  7946600 catttaatgttttcttatcatccaatcaa 7946572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 22544247 - 22544097
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||  |||||| ||||||  |||||||||| |||||||||||||||||||   ||||||    
T  22544247 ttgaattatgactcattcatttttttattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattt 22544150  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||| || |||||||  ||||||||||||||||| ||||||| ||||||||||||    
T  22544149 ttttcc-tatatataaacaatttgtttttcattattttcatgtgtctcttcccc 22544097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 366
Target Start/End: Original strand, 46514413 - 46514541
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||||||| ||||||||  ||||||||||||| | ||||  |||||||  ||||||| ||||||| |||||||||||||  ||||||||||||||||||    
T  46514413 actcatttactttttatttaccaatcaaaatgaatgatgattcatttat--ttttcattagccaattaaaattgatcatgacatgattttttcccctata 46514510  T
Q  336 tattgacaatttgtttttcattgttttcata 366  Q
    ||| ||||| ||| |||||||| ||||||||    
T  46514511 tatagacaacttgcttttcattattttcata 46514541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 15535318 - 15535168
Alignment:
Q  226 ttgaattataactcatttatttttt-attagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| ||||||| ||||| ||||||| ||||   ||||| ||||||  |||||||||| |||||||||||||||||||   ||||||    
T  15535318 ttgaattatgactcattcatttttttattagtcaatcaagatgaactatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattt 15535221  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    ||| || |||||||  ||||||||||||||||| ||||||| ||||||||||||    
T  15535220 ttttcc-tatatataaacaatttgtttttcattattttcatgtgtctcttcccc 15535168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 378
Target Start/End: Original strand, 45915019 - 45915151
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttc-ccctatatattgaca 343  Q
    |||||||||||||||| || ||||  |||||| ||||||  |||||||||| ||||||||||| |||||||   |||||||||  |||| ||||| ||||    
T  45915019 ttttttattagccaattaagatgaaccatgactcattta--gttttcatcaaccaatcaaaatggatcatgccttgattttttttccctgtatatagaca 45915116  T
Q  344 atttgtttttcattgttttcatatgtctcttcccc 378  Q
    |||||||||||||| ||||||| ||||||||||||    
T  45915117 atttgtttttcattattttcatgtgtctcttcccc 45915151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 234 - 365
Target Start/End: Original strand, 11440862 - 11440991
Alignment:
Q  234 taactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttccccta 333  Q
    |||||||||||||||||||||| |||||||||||  ||||||| |||||||  ||||||| | | |||||||||||||||||  | |||||| |  ||||    
T  11440862 taactcatttattttttattagtcaatcaaaatggatcatgactcatttatttttttcattaactaatcaaaattgatcatgacacgattttat--ccta 11440959  T
Q  334 tatattgacaatttgtttttcattgttttcat 365  Q
    |||||  ||| ||||||||||||| |||||||    
T  11440960 tatataaacagtttgtttttcattattttcat 11440991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 8314088 - 8313970
Alignment:
Q  245 ttttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaa 344  Q
    |||||||| | |||||||||||   ||||||| |||||||  |||| || |||||||||||||||||||||  ||||||||||  ||||||||| |||||    
T  8314088 ttttttatcaaccaatcaaaatagatcatgactcatttat--tttttattagccaatcaaaattgatcatgacatgattttttttcctatatatagacaa 8313991  T
Q  345 tttgtttttcattgttttcat 365  Q
     || ||||||||| |||||||    
T  8313990 attatttttcattattttcat 8313970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 3417360 - 3417443
Alignment:
Q  244 attttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcc 329  Q
    ||||| |||||| |||||||||||  ||||||| |||||||  |||||||||||||||||||||||||||||  || |||||||||    
T  3417360 attttctattagtcaatcaaaatggatcatgactcatttat--ttttcatcagccaatcaaaattgatcatggcataattttttcc 3417443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 287 - 376
Target Start/End: Original strand, 19095450 - 19095539
Alignment:
Q  287 ttttcatcagccaatcaaaattgatcatgtaatgattttttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
    ||||||| ||||||||||||| ||||| |  ||||||||||   |||||||| |||||||||||||||||| ||||||| | ||||||||    
T  19095450 ttttcatgagccaatcaaaatggatcacgatatgatttttttttctatatatagacaatttgtttttcattattttcatctatctcttcc 19095539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 45915313 - 45915391
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||||||||| || |||| |||| ||||| ||||||||||| || |||||| |||||||||||||    
T  45915313 gtgtctacattctacgacttcaagacgttcaacatcaacaatataatttttagtcaagacaatgtcttgtatttgatat 45915391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 146
Target Start/End: Original strand, 3417245 - 3417288
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacac 146  Q
    |||| ||||||||||||||||| ||||||||||| |||||||||    
T  3417245 atctctattataaacatttcccttattttattttaatagtacac 3417288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 266
Target Start/End: Complemental strand, 8314058 - 8314028
Alignment:
Q  236 actcatttattttttattagccaatcaaaat 266  Q
    |||||||||||||||||||||||||||||||    
T  8314058 actcatttattttttattagccaatcaaaat 8314028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Complemental strand, 15535348 - 15535320
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  15535348 catttaatgttttcttatcatccaatcaa 15535320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 226 - 378
Target Start/End: Complemental strand, 52619 - 52469
Alignment:
Q  226 ttgaattataactcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgatttt 325  Q
    ||||||||| |||||||||||||||||||||||||||| |||   |||||| ||||||  ||||||| || ||||||||||||||| |   |||||||||    
T  52619 ttgaattatgactcatttattttttattagccaatcaagatggaccatgactcattta--gttttcaccaaccaatcaaaattgattacacaatgatttt 52522  T
Q  326 ttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcccc 378  Q
    |  | || ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  52521 tgtctctgtatatagacaatttgtttttcattattttcatgtgtctcttcccc 52469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 52842 - 52765
Alignment:
Q  103 atctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgt 180  Q
    |||| ||||||||||||||||| |||||||||||||||||| | ||||||| |||||||| ||||||||| |||||||    
T  52842 atctctattataaacatttcccttattttattttgatagtatatgtggcaagcttatattgaaaggtgcagttaatgt 52765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 365
Target Start/End: Complemental strand, 67318 - 67191
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    ||||||||||||||||||||| ||||||||||  |||| || |||||||  ||||||| |||||||||||||| |||||| |||| ||||||  ||||||    
T  67318 actcatttattttttattagcaaatcaaaatggatcataactcatttat--ttttcattagccaatcaaaatttatcatgaaatggttttttttcctata 67221  T
Q  336 tattgacaatttgtttttcattgttttcat 365  Q
    |||  ||||||||||||||||| |||||||    
T  67220 tatacacaatttgtttttcattattttcat 67191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 67282 - 67249
Alignment:
Q  233 ataactcatttattttttattagccaatcaaaat 266  Q
    ||||||||||||||||| ||||||||||||||||    
T  67282 ataactcatttatttttcattagccaatcaaaat 67249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 226 - 376
Target Start/End: Original strand, 26698 - 26847
Alignment:
Q  226 ttgaattataactcatttat-tttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||||||| ||||||| || ||||||||| |||||||| ||||  |||||| ||||||  |||||||||| ||||||||||| |||||||   ||||||    
T  26698 ttgaattatgactcattcatatttttattaaccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaatggatcatgccttgattt 26795  T
Q  325 tttcccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
    ||||||   ||||| |||||||||||||||||| ||||||| ||||||||||    
T  26796 tttccctattatatagacaatttgtttttcattattttcatgtgtctcttcc 26847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 26994 - 27072
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||||||||| || |||| |||| ||||| ||||||||||| || ||||||||||||||||||||    
T  26994 gtgtctacattctacgacttcaagacgttcaacatcaacaatataatttttagtcaagacaatgttttgtatttgatat 27072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 236 - 366
Target Start/End: Complemental strand, 22194 - 22067
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttcccctata 335  Q
    |||||||||||||||||| | |||||||||| | ||||||| |||||||  ||||||| ||||||| |||||||||||||  |||||||||| |||||||    
T  22194 actcatttattttttatttgtcaatcaaaataaatcatgactcatttat--ttttcattagccaattaaaattgatcatgacatgatttttt-ccctata 22098  T
Q  336 tattgacaatttgtttttcattgttttcata 366  Q
    ||| ||||| ||| |||||||| ||||||||    
T  22097 tatagacaacttgcttttcattattttcata 22067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 379
Target Start/End: Original strand, 18074 - 18227
Alignment:
Q  226 ttgaattataactcatttattttt-tattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattt 324  Q
    ||||| ||| ||||||| |||||| |||||||||||||| ||||  |||||| ||||||  |||||||||| |||||||||||||||||||   ||||||    
T  18074 ttgaactatgactcattcatttttatattagccaatcaagatgaaccatgactcattta--gttttcatcaaccaatcaaaattgatcatgccttgattt 18171  T
Q  325 tttcc-cctatatattgacaatttgtttttcattgttttcatatgtctcttcccca 379  Q
    |||   ||||||||  |||||||||||| ||||| ||||||| |||||||||||||    
T  18172 ttttttcctatatagagacaatttgtttatcattattttcatgtgtctcttcccca 18227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 18391 - 18469
Alignment:
Q  20 gtgtctatattattcgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    ||||||| ||| | |||||||||| || |||| |||| ||||| ||||||||||| || |||| |||||||||||||||    
T  18391 gtgtctacattctacgacttcaagacgttcaacatcaacaatataatttttagtcaagacaatattttgtatttgatat 18469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 98
Target Start/End: Original strand, 25588 - 25652
Alignment:
Q  34 cgacttcaaggcgctcaaaatcagcaatacaatttttagtctaggcaatgttttgtatttgatat 98  Q
    |||||||||| || |||| ||||  |||| |||||||||||  | ||||||||||||||||||||    
T  25588 cgacttcaagacgttcaacatcaaaaatataatttttagtcacgacaatgttttgtatttgatat 25652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 365
Target Start/End: Original strand, 101142 - 101270
Alignment:
Q  236 actcatttattttttattagccaatcaaaatgattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatga-ttttttcccctat 334  Q
    ||||||||||||||||||||||||||||||||  ||||||| |||||||  ||||||| |||||||||||||||| |||   |||| ||||||   ||||    
T  101142 actcatttattttttattagccaatcaaaatggatcatgactcatttat--ttttcataagccaatcaaaattgagcattacatgattttttttttctat 101239  T
Q  335 atattgacaatttgtttttcattgttttcat 365  Q
    |||| ||||| ||||||| |||| |||||||    
T  101240 atatagacaaattgttttacattattttcat 101270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 9194 - 9339
Alignment:
Q  230 attataactcatttattttttattagccaatcaaaat-gattcatgacacatttatagttttcatcagccaatcaaaattgatcatgtaatgattttttc 328  Q
    |||||||| |||||||||| ||| | ||||| ||||  |  ||||||| |||||||  ||||||| ||||||||||||| |||||||  ||||||||||     
T  9194 attataacacatttattttatatcaaccaataaaaagaggatcatgactcatttat--ttttcatgagccaatcaaaatggatcatgatatgattttttt 9291  T
Q  329 ccctatatattgacaatttgtttttcattgttttcatatgtctcttcc 376  Q
      |||||||| |||||||||||||||||| ||||||| | ||||||||    
T  9292 ttctatatatagacaatttgtttttcattattttcatctatctcttcc 9339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 9160 - 9188
Alignment:
Q  171 catttaatgttttcttatcatccaatcaa 199  Q
    |||||||||||||||||||||||||||||    
T  9160 catttaatgttttcttatcatccaatcaa 9188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 34811 - 34864
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtg 149  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  34811 tatctttatctctattataaacattttctctattttattttgatagtacacgtg 34864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 163969 - 163916
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtg 149  Q
    ||||||||||| |||||||||||||| | |||||||||||||||||||||||||    
T  163969 tatctttatctctattataaacattttctctattttattttgatagtacacgtg 163916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 122 - 196
Target Start/End: Complemental strand, 24486 - 24412
Alignment:
Q  122 cccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgttttcttatcatccaat 196  Q
    ||||||||||||||||||||||||| ||||| ||| ||||| ||| ||  |||||||||||  ||||||||||||    
T  24486 cccctattttattttgatagtacacttggcagcctaatattgaaatgtttatttaatgtttctttatcatccaat 24412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 18778 - 18864
Alignment:
Q  97 atctttatctttattataaacatttcccctattttattttgatagtacacgtggcaaccttatattaaaaggtgcatttaatgtttt 183  Q
    |||||||||||||||||||||||||  | |||||||||||||||||||  || |||| || || || ||  ||||||||||||||||    
T  18778 atctttatctttattataaacattttgcttattttattttgatagtacgtgtagcaagctaatgttgaattgtgcatttaatgtttt 18864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 3146 - 3093
Alignment:
Q  96 tatctttatctttattataaacatttcccctattttattttgatagtacacgtg 149  Q
    ||||||||||||||||||| | |||| || || ||| |||||||||||||||||    
T  3146 tatctttatctttattatatatatttgccttaattttttttgatagtacacgtg 3093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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