View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_13 (Length: 437)
Name: NF20435_low_13
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 34826717 - 34826282
Alignment:
| Q |
1 |
cgcatggctgctgtctctctgatctcccttatcagcatcaattaatgaataacgtatttcaaatgaaattattaagattaaatgcaaatacaaataattc |
100 |
Q |
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| T |
34826717 |
cgcatggctgctatctctctgatctcccttatcagcatcaattaatgaataacgtatttcaaatgaaattattaagattaaatgcaaatacaaataattc |
34826618 |
T |
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| Q |
101 |
gaggacattcattgtgttgtcataagctacactatcacaacttaatgatggtagtaataatttgatttgcgaaagggaagaacacatg---nnnnnnncn |
197 |
Q |
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| T |
34826617 |
gaggacattcattgtgttgtcataagctacactatcacaacttaatgatggtagtaataatttgatttgcgaaagggaagaacacatgtctttttaaaaa |
34826518 |
T |
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| Q |
198 |
nnnnnnnnttaggaaaagaagaacacacatgaaaagcaaattatgtccacatgcatatactagcggcaatcgacaaacacatgttgtttataaatttggt |
297 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34826517 |
aaaagaaattaggaaaagaaga--acacatgaaaagcaaattatgtccacatgcatatactagcggcaatcgacaaacacatgttgattataaatttggt |
34826420 |
T |
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| Q |
298 |
tggtctttgatacctacgaaatcaaccagttatataacactccaatatacacacatgcactagaaacatcaacaaaaattgatgtatttatataatactt |
397 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826419 |
tggtctttgatacctacgaaatcaaccaattatataacactgcaatatacacac--gcactagaaacatcaacaaaaattgatgtatttatataatactt |
34826322 |
T |
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| Q |
398 |
ctagatacactcattagatatatcaacaaaaattgatgta |
437 |
Q |
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||| ||| || ||||||||||||||||||||||| ||||| |
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| T |
34826321 |
ctatatatacgcattagatatatcaacaaaaattaatgta |
34826282 |
T |
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