View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_14 (Length: 431)
Name: NF20435_low_14
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 80 - 408
Target Start/End: Original strand, 10202646 - 10202974
Alignment:
| Q |
80 |
taaagaaacttgatgtactgttttcgttgatcaatcaatgagattttcacttccattttgaaatttcaaataactcaaatggtataaaagcaagttcgtc |
179 |
Q |
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| T |
10202646 |
taaagaaacttgatgtactgttttcgttgatcaatcaatgagattttcatttccattttgaaatttcaaataactcaaatggtatcagagcaagttcgtc |
10202745 |
T |
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| Q |
180 |
tcgatttactctctgctgcgagaactttaatagaactttctcttcctttccttcattttctaggaagattcatagtgttacctcttccgatttccttcat |
279 |
Q |
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| T |
10202746 |
tcgatctactctctgctgcgagaactttaatagaactttctcttcctttccttcattttctaggaagattcatagtgttacctcttccgatttccttcat |
10202845 |
T |
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| Q |
280 |
ttttcaagatattttcttcaatcgattgaatacgacggtgagcggtcaaaatagcaacacctattagatagtgatgagaatattaattcaaataaatagc |
379 |
Q |
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| T |
10202846 |
ttttcaagatattttcttcaatcgattgaatacgacggtgagcggtcaaaatagcaacacctattagatagtaatgagaatattaattcaaataaatagc |
10202945 |
T |
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| Q |
380 |
ttaacctcttactttatatacaagtaaca |
408 |
Q |
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| T |
10202946 |
ttaacctcttacttgatatacaagtaaca |
10202974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 10202551 - 10202618
Alignment:
| Q |
10 |
cgaagaatatattgactgactaattttatgagttagttacttagcttgcatagctagttaggcagtta |
77 |
Q |
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| T |
10202551 |
cgaagaaaatattgactgactaattttatgagttagttacttagcttgcatagctagttaggcagtta |
10202618 |
T |
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