View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_low_15 (Length: 430)
Name: NF20435_low_15
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_15 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 412
Target Start/End: Complemental strand, 20478151 - 20477750
Alignment:
| Q |
11 |
cacagaggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttac |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478151 |
cacagaggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttac |
20478052 |
T |
|
| Q |
111 |
catgaagcgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478051 |
catgaagcgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttg |
20477952 |
T |
|
| Q |
211 |
cccagtttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20477951 |
cccagtttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaat |
20477852 |
T |
|
| Q |
311 |
tgggagaatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcctt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20477851 |
tgggagaatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcctt |
20477752 |
T |
|
| Q |
411 |
ct |
412 |
Q |
| |
|
|| |
|
|
| T |
20477751 |
ct |
20477750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 38513625 - 38513234
Alignment:
| Q |
18 |
gatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttaccatgaag |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | | ||||| || |||||||||||||||| |
|
|
| T |
38513625 |
gatcatttcgaggcagctattgataggatcattggtggtttggagaagaagaacagggtaataagtaagctgcaaagacgcactgttgcttaccatgaag |
38513526 |
T |
|
| Q |
118 |
cgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttgcccagtt |
217 |
Q |
| |
|
| || |||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
38513525 |
caggtcatgctgttgcaggttggttcttggaacatactgacccattgttgaaagtaactattgttcctcgcggaacatcggctcttgggtttgcccagta |
38513426 |
T |
|
| Q |
218 |
tgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaattgggaga |
317 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
|
|
| T |
38513425 |
tgttccaaatgagaaccttctcatgacaaaggaacaacttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctcattgggaca |
38513326 |
T |
|
| Q |
318 |
atctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcct |
409 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
38513325 |
atctctacaggagcacaagatgacttggagaaagtcaccaagatgacatatgctcaagtagccgtctatggtttcagcgaaaaagtgggcct |
38513234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 29728792 - 29729184
Alignment:
| Q |
17 |
ggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttaccatgaa |
116 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||| ||| |||| || ||||| |||||||||| ||| |
|
|
| T |
29728792 |
ggatcatttcgaggcagctattgatagaatcattggcggtttagagaagaagaaccgggtaataagtaagcaggaaaggcgtacaattgcttaccacgaa |
29728891 |
T |
|
| Q |
117 |
gcgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttgcccagt |
216 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||| |
|
|
| T |
29728892 |
gcaggccatgctgttgttggttggttcttggaacataccgagccattattgaaagtaactattgttcctcgcggaacagcagctcttgggtttgcgcagt |
29728991 |
T |
|
| Q |
217 |
ttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaattgggag |
316 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29728992 |
atgtttcaaatgagaaccttctcatgacaaaagagcaactttttgataggacttgtatgacccttggtggtcgggctgccgagcaggttctcattgggac |
29729091 |
T |
|
| Q |
317 |
aatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcct |
409 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
29729092 |
aatctctaccggagcacaaaatgacctggagaaagtcaccaaaatgacatatgctcaagtagccatctatggtttcagcgaaaaagttggcct |
29729184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 409
Target Start/End: Original strand, 45285077 - 45285473
Alignment:
| Q |
11 |
cacagaggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttac |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || | || || |||||||||||| |
|
|
| T |
45285077 |
cacaaaggatcattttgaggcagctattgataggatcatcggtggtttggagaagaagaacaaggtaataagcaagcagcacaggcgaaccgttgcttac |
45285176 |
T |
|
| Q |
111 |
catgaagcgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttg |
210 |
Q |
| |
|
|||||||| || |||| |||||| ||||||||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
45285177 |
catgaagcaggtcatgctgttgcaggttggttcttggaacatactaatccatttttgaaagtaactattgttcctcgaggaacagcagctcttgggtttg |
45285276 |
T |
|
| Q |
211 |
cccagtttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaat |
310 |
Q |
| |
|
| |||| ||||||||| || ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| || |
|
|
| T |
45285277 |
cgcagtatgttccaaacgagaaccatctcatgacaa--gagcagctttttgataggacttgtatgacccttggtggttgggctgccgagcaggttctcat |
45285374 |
T |
|
| Q |
311 |
tgggagaatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcct |
409 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
45285375 |
tgggacaatctctacaggagcacaagatgacttggagaaagtcaccaagatgatatatgctcaagtagctgtctatggtttcagcgaaaaagttggcct |
45285473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 16838267 - 16838659
Alignment:
| Q |
17 |
ggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttaccatgaa |
116 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| |||||||| ||| |||| || ||||||||||||||||| ||| |
|
|
| T |
16838267 |
ggatcatttcgaggcagctattgatagaatcattggcggtttagagaagaagaaccgtgtaataagtaagcaggaaaggcgtaccgttgcttaccacgaa |
16838366 |
T |
|
| Q |
117 |
gcgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttgcccagt |
216 |
Q |
| |
|
|| ||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
16838367 |
gcaggccatgctgttgttggttggttcttggaacataccgagccattattgaaagtaactattgttcctcgcggaacagcagctcttgggtttgcccagt |
16838466 |
T |
|
| Q |
217 |
ttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaattgggag |
316 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
16838467 |
atgtttcaaatgagaaccttctcatgacaaaagagcaactttttgataggacttgtatgacccttggtggtcgggctgccgagcaggttctcattgggac |
16838566 |
T |
|
| Q |
317 |
aatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcct |
409 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
16838567 |
agtctctaccggagcacaaaatgacttggagaaagtcaccaaaatgacatatgctcaagtatccatctatggtttcagcgaaaaagttggcct |
16838659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 409
Target Start/End: Original strand, 3314 - 3708
Alignment:
| Q |
16 |
aggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggtaataagcaagaaggatagacgtaccgttgcttaccatga |
115 |
Q |
| |
|
|||||||||| |||||||| ||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||| |||| || ||||| ||||||||||||| |
|
|
| T |
3314 |
aggatcatttcgaggcagccattgatagggtcattggcggtttagagaagaagaacatggtaataagtaagcaggaaaggcgtactattgcttaccatga |
3413 |
T |
|
| Q |
116 |
agcgggccatgttgttgcggg-ttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgtggaacagcggctcttgggtttgccca |
214 |
Q |
| |
|
||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
3414 |
agcaggccatgttgttgtggggttggttcttggaacatactgagccattgttgaaagtaactattgttcctcgcggaacagaaactcttgggtttgccca |
3513 |
T |
|
| Q |
215 |
gtttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgtatgacccttggtggtcgggctgccgagcaggttctaattggg |
314 |
Q |
| |
|
|| | | ||||||| ||| ||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
3514 |
gtatttgtcaaatgaaaaccttctcatgaccaaggagcaacttttcgataggacttgtatggcccttggtggtcgcgctgccgaacaggttctcattggg |
3613 |
T |
|
| Q |
315 |
agaatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaaaaagttggcct |
409 |
Q |
| |
|
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| |||||||||| |
|
|
| T |
3614 |
actatctctacaggagcacaagatgacttggagaaagtcaccaagatgacatatgctcaagtagccgtctatggttttagcgaacaagttggcct |
3708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 73 - 305
Target Start/End: Original strand, 24004915 - 24005147
Alignment:
| Q |
73 |
aggtaataagcaagaaggatagacgtaccgttgcttaccatgaagcgggccatgttgttgcgggttggttcttggaacatactgagccattgttgaaagt |
172 |
Q |
| |
|
|||||||||| ||| ||| || ||||| ||||||||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24004915 |
aggtaataagtaagcgggaaaggcgtactgttgcttaccatgaagcaggccatgctgttgcaggttggttcttggaacattgtgagccattgttgaaagt |
24005014 |
T |
|
| Q |
173 |
aactattgttcctcgtggaacagcggctcttgggtttgcccagtttgttccaaatgacgaccatctcatgacaaaggagcagcttttcgataggacttgt |
272 |
Q |
| |
|
||| ||||||||||| || ||||| || |||||||||||||| | |||||||| ||| ||| ||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
24005015 |
aaccattgttcctcgcggcacagcagcacttgggtttgcccaatatgttccaagtgagaaccttctcaggacaaaggagcagcttttggatatgacttgt |
24005114 |
T |
|
| Q |
273 |
atgacccttggtggtcgggctgccgagcaggtt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
24005115 |
atgacccttggtggtcgggctgccgagcaggtt |
24005147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 403
Target Start/End: Original strand, 24005408 - 24005512
Alignment:
| Q |
299 |
gcaggttctaattgggagaatctctacaggagcacaaaatgacttggagaaagtcaccaagatgacatatgctcaagtaaccgtatatggtttcagcgaa |
398 |
Q |
| |
|
||||||||| ||||| |||||| || |||||||||||||||||||||||||| ||||||||||||||||| |||||| || | ||||||||||| ||| |
|
|
| T |
24005408 |
gcaggttctcattggagcaatctccactggagcacaaaatgacttggagaaagtaaccaagatgacatatgcccaagtagccatctatggtttcagtgaa |
24005507 |
T |
|
| Q |
399 |
aaagt |
403 |
Q |
| |
|
||||| |
|
|
| T |
24005508 |
aaagt |
24005512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 24004389 - 24004449
Alignment:
| Q |
17 |
ggatcattttgaggcagctattgataggatcattggtggtttggagaagaagaacaaggta |
77 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24004389 |
ggatcatttcgaggcagctatcgataggatcattggtggtttggagaagaagaacagggta |
24004449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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