View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_18 (Length: 408)

Name: NF20435_low_18
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_18
NF20435_low_18
[»] chr8 (17 HSPs)
chr8 (18-380)||(45156790-45157149)
chr8 (252-380)||(14420864-14420992)
chr8 (252-380)||(5540867-5540995)
chr8 (252-361)||(25228016-25228123)
chr8 (274-361)||(18826725-18826812)
chr8 (252-380)||(10663011-10663139)
chr8 (274-343)||(12582240-12582309)
chr8 (252-316)||(5981156-5981220)
chr8 (286-361)||(22174782-22174857)
chr8 (298-380)||(43682669-43682751)
chr8 (252-380)||(33878110-33878238)
chr8 (298-380)||(18722181-18722264)
chr8 (298-380)||(25592371-25592454)
chr8 (298-380)||(25595556-25595639)
chr8 (286-343)||(30640541-30640598)
chr8 (298-361)||(14589707-14589770)
chr8 (274-343)||(19792948-19793019)
[»] chr5 (22 HSPs)
chr5 (252-380)||(43490793-43490921)
chr5 (252-377)||(22937930-22938055)
chr5 (259-364)||(37214773-37214878)
chr5 (252-380)||(32837083-32837211)
chr5 (274-361)||(14016927-14017014)
chr5 (252-343)||(18031710-18031801)
chr5 (251-380)||(31862871-31863000)
chr5 (251-343)||(21336650-21336743)
chr5 (274-361)||(17747639-17747726)
chr5 (274-344)||(28788309-28788379)
chr5 (274-343)||(39191353-39191422)
chr5 (252-343)||(21827949-21828041)
chr5 (271-333)||(2836699-2836761)
chr5 (250-395)||(14376691-14376836)
chr5 (274-343)||(40916795-40916867)
chr5 (298-380)||(42061532-42061614)
chr5 (251-316)||(7270240-7270305)
chr5 (276-343)||(4100346-4100413)
chr5 (274-333)||(30065584-30065643)
chr5 (286-343)||(2837584-2837641)
chr5 (252-380)||(28442053-28442181)
chr5 (298-361)||(7624303-7624366)
[»] chr3 (26 HSPs)
chr3 (252-380)||(16185528-16185656)
chr3 (251-380)||(35411675-35411805)
chr3 (252-361)||(19302255-19302364)
chr3 (253-343)||(9380012-9380102)
chr3 (264-350)||(31548563-31548649)
chr3 (252-342)||(34984668-34984758)
chr3 (252-343)||(53814971-53815062)
chr3 (252-342)||(54460367-54460457)
chr3 (274-343)||(16243188-16243257)
chr3 (274-343)||(54736759-54736828)
chr3 (252-350)||(29344674-29344773)
chr3 (274-344)||(43808900-43808970)
chr3 (298-380)||(52198351-52198433)
chr3 (252-380)||(538015-538143)
chr3 (274-339)||(10880798-10880863)
chr3 (265-354)||(19305445-19305534)
chr3 (252-380)||(23299425-23299553)
chr3 (252-362)||(3839790-3839903)
chr3 (298-377)||(10107489-10107568)
chr3 (252-380)||(10884018-10884146)
chr3 (252-380)||(6921890-6922018)
chr3 (251-343)||(41976320-41976412)
chr3 (336-395)||(55032774-55032833)
chr3 (303-380)||(18645613-18645690)
chr3 (252-333)||(20729395-20729477)
chr3 (298-356)||(17532565-17532623)
[»] scaffold0005 (2 HSPs)
scaffold0005 (260-364)||(246238-246342)
scaffold0005 (274-380)||(290985-291091)
[»] chr6 (16 HSPs)
chr6 (252-380)||(9953036-9953164)
chr6 (286-361)||(13004434-13004509)
chr6 (274-343)||(10289208-10289277)
chr6 (252-333)||(28666095-28666176)
chr6 (252-380)||(5739061-5739190)
chr6 (286-380)||(2371448-2371541)
chr6 (298-380)||(23379685-23379768)
chr6 (298-361)||(31071540-31071603)
chr6 (274-319)||(20181295-20181340)
chr6 (274-319)||(22154651-22154696)
chr6 (302-350)||(12991556-12991604)
chr6 (298-380)||(23389024-23389107)
chr6 (300-380)||(34501462-34501542)
chr6 (298-361)||(28112641-28112704)
chr6 (298-359)||(6512442-6512503)
chr6 (302-343)||(13022190-13022231)
[»] chr4 (43 HSPs)
chr4 (260-364)||(14571034-14571138)
chr4 (251-380)||(5680468-5680597)
chr4 (274-361)||(29324001-29324088)
chr4 (274-361)||(44809795-44809882)
chr4 (274-343)||(3718358-3718427)
chr4 (274-343)||(40794214-40794283)
chr4 (252-380)||(49269735-49269863)
chr4 (253-343)||(21418980-21419070)
chr4 (252-380)||(18910604-18910732)
chr4 (252-343)||(27013229-27013321)
chr4 (274-358)||(34320738-34320822)
chr4 (252-343)||(12782106-12782197)
chr4 (298-380)||(12237400-12237482)
chr4 (298-380)||(19865515-19865597)
chr4 (302-380)||(40617684-40617762)
chr4 (252-380)||(5669628-5669756)
chr4 (252-380)||(15431164-15431292)
chr4 (252-380)||(15437778-15437906)
chr4 (252-380)||(33410834-33410962)
chr4 (298-395)||(37104098-37104195)
chr4 (252-343)||(15430674-15430766)
chr4 (252-343)||(15437288-15437380)
chr4 (251-380)||(9716950-9717079)
chr4 (252-380)||(3798668-3798796)
chr4 (252-333)||(53010377-53010458)
chr4 (252-343)||(19826701-19826793)
chr4 (252-343)||(24044966-24045057)
chr4 (250-340)||(44163999-44164090)
chr4 (298-361)||(56194768-56194831)
chr4 (298-360)||(56198075-56198137)
chr4 (252-333)||(52007350-52007431)
chr4 (274-343)||(27677874-27677944)
chr4 (274-343)||(27691933-27692003)
chr4 (303-380)||(5721843-5721920)
chr4 (300-361)||(33926169-33926230)
chr4 (298-361)||(15812973-15813036)
chr4 (282-333)||(35509229-35509280)
chr4 (298-380)||(19861159-19861241)
chr4 (298-380)||(53093767-53093849)
chr4 (249-357)||(15405793-15405901)
chr4 (298-361)||(47114822-47114885)
chr4 (252-333)||(19819950-19820032)
chr4 (302-343)||(48014841-48014882)
[»] scaffold0015 (1 HSPs)
scaffold0015 (252-362)||(197242-197352)
[»] chr7 (18 HSPs)
chr7 (252-380)||(8276012-8276140)
chr7 (252-362)||(20081530-20081640)
chr7 (251-380)||(26556509-26556638)
chr7 (274-350)||(17729995-17730071)
chr7 (251-343)||(45291383-45291475)
chr7 (252-343)||(9865551-9865642)
chr7 (252-343)||(45288047-45288138)
chr7 (252-342)||(9273944-9274034)
chr7 (274-343)||(4596833-4596902)
chr7 (274-343)||(4694745-4694814)
chr7 (274-343)||(9080398-9080467)
chr7 (274-343)||(10344638-10344707)
chr7 (298-361)||(16164935-16164998)
chr7 (298-361)||(48644662-48644725)
chr7 (251-380)||(10431385-10431514)
chr7 (252-380)||(4542074-4542202)
chr7 (298-361)||(6602667-6602730)
chr7 (298-380)||(2442149-2442231)
[»] chr1 (13 HSPs)
chr1 (252-380)||(29644180-29644308)
chr1 (274-361)||(27537104-27537191)
chr1 (274-361)||(45961598-45961685)
chr1 (252-350)||(41059135-41059234)
chr1 (252-339)||(2404722-2404809)
chr1 (274-380)||(2793321-2793427)
chr1 (298-380)||(49499440-49499522)
chr1 (298-361)||(6071791-6071854)
chr1 (298-361)||(31204060-31204123)
chr1 (274-343)||(42021743-42021812)
chr1 (252-333)||(21019287-21019367)
chr1 (300-380)||(1951217-1951297)
chr1 (275-343)||(21108302-21108370)
[»] chr2 (25 HSPs)
chr2 (274-380)||(16788411-16788516)
chr2 (251-380)||(25139912-25140041)
chr2 (274-361)||(31430529-31430616)
chr2 (274-361)||(38014658-38014745)
chr2 (251-343)||(10599950-10600042)
chr2 (252-380)||(25873203-25873331)
chr2 (252-343)||(3874482-3874573)
chr2 (274-380)||(15466192-15466298)
chr2 (274-340)||(13972725-13972791)
chr2 (247-380)||(25869830-25869963)
chr2 (274-343)||(13136784-13136853)
chr2 (274-333)||(43722926-43722985)
chr2 (274-324)||(5665852-5665902)
chr2 (287-361)||(31428340-31428414)
chr2 (298-380)||(38006158-38006240)
chr2 (252-380)||(30275563-30275691)
chr2 (298-380)||(25821789-25821872)
chr2 (298-361)||(36985626-36985689)
chr2 (298-361)||(45453097-45453160)
chr2 (275-333)||(5104974-5105032)
chr2 (252-380)||(36809307-36809435)
chr2 (277-333)||(6825999-6826055)
chr2 (300-395)||(29439643-29439738)
chr2 (298-361)||(45456346-45456409)
chr2 (252-380)||(26358672-26358800)
[»] scaffold0080 (1 HSPs)
scaffold0080 (252-380)||(26253-26373)
[»] scaffold1993 (1 HSPs)
scaffold1993 (251-343)||(1044-1136)
[»] scaffold0757 (1 HSPs)
scaffold0757 (252-343)||(4563-4654)
[»] scaffold0270 (3 HSPs)
scaffold0270 (276-343)||(4329-4396)
scaffold0270 (276-343)||(11459-11526)
scaffold0270 (276-343)||(969-1036)
[»] scaffold0381 (1 HSPs)
scaffold0381 (252-343)||(6462-6554)
[»] scaffold0520 (1 HSPs)
scaffold0520 (252-342)||(4790-4880)
[»] scaffold0035 (1 HSPs)
scaffold0035 (298-380)||(61643-61725)
[»] scaffold0045 (1 HSPs)
scaffold0045 (298-358)||(89011-89071)
[»] scaffold0334 (1 HSPs)
scaffold0334 (298-376)||(18509-18588)
[»] scaffold1684 (1 HSPs)
scaffold1684 (249-357)||(369-477)


Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 45157149 - 45156790
Alignment:
Q  18 aattggaccttttactgtacaaatttactcgtaacatttgaaacatcaaaccttttaccattaaacaccacttgattcctctcatgccacagcaaagcag 117  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45157149 aattggaccttttattgtacaaatttactcgtaacatttgaaacatcaaaccttttaccattaaacaccacttgattcctctcatgccacagcaaagcag 45157050  T
Q  118 caaggaaaccaaacagagaagtccactgaatgtgatcatccactcgaaccccactagcaatgttacactccacccactcattaacaccctcatcaaagaa 217  Q
     |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45157049 taaggaaaccaaacagagaagtccactgaatgtgatcatccgctcgaaccccactagcaatgttacactccacccactcattaacaccctcatcaaagaa 45156950  T
Q  218 attatgggagaggcaagttctaaaggaacactgatgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagc 317  Q
    |||||||||||||||||||||||||||||||||||||    ||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  45156949 attatgggagaggcaagttctaaaggaacactgatgac---agtttatcattctatatttttagagtctttttatgatatttttgagttcacaagcaagc 45156853  T
Q  318 tttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45156852 tttagcagcaagaaaagcaagaaaaatagaagattttgaagaaagcacaatcgtgtcacgatt 45156790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 14420864 - 14420992
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  14420864 tgatgacagtctctcattccacatttttagagtctttttatgatattttttagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataagat 14420963  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| || ||| ||||||||    
T  14420964 tttgaagaaagcaaaatcgtatcacgatt 14420992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 5540995 - 5540867
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||| ||||||||||||||||    
T  5540995 tgatgacagtttgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagacaagtaagaaaaatagaagat 5540896  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||| ||||| || | ||||||||||    
T  5540895 tttgaaggaagcaaaatcatgtcacgatt 5540867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 252 - 361
Target Start/End: Original strand, 25228016 - 25228123
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| |||||| |||| |||| |||||||||||||| ||||||||||||||||||||||||||||  || | |||||||| |||||||||||||||||    
T  25228016 tgatgacagtctg-cattgcacaattttagagtctttt-atgatatttttgagttcacaagcaagctcaagaagcaagaaaaacaagaaaaatagaagat 25228113  T
Q  352 tttgaagaaa 361  Q
    ||||||||||    
T  25228114 tttgaagaaa 25228123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 18826812 - 18826725
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||| |||||| |||||||| |||||||||||||||    
T  18826812 atttttagagtctttttatgataattttgagttcacaagcaaacttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 18826725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 10663011 - 10663139
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| ||||||| || |||||||||||||||  | | || |||  ||||||||||||||||||||    
T  10663011 tgatgacagtcagtcattcactatttttagagtctttttcatgatatgtt-gagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaaga 10663109  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  10663110 ttttgaagaaagcaaaatcgtgtcacgatt 10663139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 12582240 - 12582309
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||||||||||||||||||||||| || ||||  |||||||||||||||||    
T  12582240 atttttagagtctttttatgatatttttgagttcacaagcaagattaagcagaaagaaaagcaagaaaaa 12582309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 5981220 - 5981156
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 316  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5981220 tgatgacagtccgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaag 5981156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 286 - 361
Target Start/End: Complemental strand, 22174857 - 22174782
Alignment:
Q  286 tttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||| ||||| ||||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  22174857 ttttcatgatgtttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 22174782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 43682751 - 43682669
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||| ||||||| || | || |||  |||||||||||||||||||||||||||||||||| || ||||||||||||    
T  43682751 ttttgagttcataagcaagtttaaacagcaaagaaagcaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 43682669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 33878238 - 33878110
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||| ||| || | || |||  ||| ||||||||||||||||    
T  33878238 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagaaagtttaaacagcaaagaaaacaagaaaaatagaaga 33878140  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  33878139 ttttgaagaaagcaaaatcgtgtcacgatt 33878110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 18722264 - 18722181
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| |||||||| | ||||||  ||| |||||||||||||||| |||||||||||||| || ||||||||||||    
T  18722264 ttttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaatcgtgtcacgatt 18722181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 25592454 - 25592371
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| |||||||| | ||||||  ||| |||||||||||||||| |||||||||||||| || ||||||||||||    
T  25592454 ttttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaatcgtgtcacgatt 25592371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 25595639 - 25595556
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| |||||||| | ||||||  ||| |||||||||||||||| |||||||||||||| || ||||||||||||    
T  25595639 ttttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaatcgtgtcacgatt 25595556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 30640541 - 30640598
Alignment:
Q  286 tttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||||||    
T  30640541 tttttatgatacttttgagttcacaagcaagcttaagcagcaagaaatgcaagaaaaa 30640598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 14589770 - 14589707
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||   ||||||| |||||| |||||||| |||||||||||||||    
T  14589770 ttttgagttcacaagcaagcttacacaacaaggaaagcatgaaaaatacaagattttgaagaaa 14589707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 19792948 - 19793019
Alignment:
Q  274 atttttagagtctttt-tatgatatttttgagttcacaagc-aagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||||| |||||||||||||||||||||||| ||| || | ||||||||||||| |||||||    
T  19792948 atttttagagtcttttttatgatatttttgagttcacaagcaaagattaaacaacaagaaaagctagaaaaa 19793019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 6e-50; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 43490793 - 43490921
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||    
T  43490793 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatagaagat 43490892  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| || ||||||||||||    
T  43490893 tttgaagaaagcaaaatcgtgtcacgatt 43490921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 252 - 377
Target Start/End: Complemental strand, 22938055 - 22937930
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  22938055 tgatgacagtctgtcattccacgtttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagat 22937956  T
Q  352 tttgaagaaagcacaaccgtgtcacg 377  Q
    ||||||||||||| || |||| ||||    
T  22937955 tttgaagaaagcaaaatcgtgccacg 22937930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 259 - 364
Target Start/End: Original strand, 37214773 - 37214878
Alignment:
Q  259 agtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaag 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  37214773 agtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaag 37214872  T
Q  359 aaagca 364  Q
    ||||||    
T  37214873 aaagca 37214878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 32837083 - 32837211
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||    
T  32837083 tgatgacagtatgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagaaagaaaaatagaagat 32837182  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| || ||||||| ||||    
T  32837183 tttgaagaaagcaaaatcgtgtcatgatt 32837211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 14017014 - 14016927
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  14017014 atttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 14016927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 18031710 - 18031801
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||| || |||| ||||||||||||||||||    
T  18031710 tgatgatagtccgtcattccatatttttagagtctttttatgatattttcgagttcaaaagcaagtttaagcagcaagaaaagcaagaaaaa 18031801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 31862871 - 31863000
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaag 349  Q
    ||||||| |||| ||||||||  |||||||| ||| |||| || ||||||| |||||||||||||||||| | ||||||  ||||||||||||||||||     
T  31862871 atgatgacagtcagtcattccttatttttagtgtcattttcataatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaaa 31862969  T
Q  350 attttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||| || ||||||||||||    
T  31862970 attttgaagaaagcaaaatcgtgtcacgatt 31863000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 21336743 - 21336650
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||| |||| |||||||   ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21336743 atgatgacagtcagtcattcactatttttagagtcttttttattatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 21336650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 17747639 - 17747726
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  17747639 atttttagagtctttttatgataattttgagttcataagaaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 17747726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 28788379 - 28788309
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaat 344  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||    
T  28788379 atttttagagtctttttatgatattttttagttcacaagcaagcttaagcagcaagaaaaacaagaaaaat 28788309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 39191353 - 39191422
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||| |||||||||    
T  39191353 atttttagagtctttttatgatacttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 39191422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 21828041 - 21827949
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||    
T  21828041 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaa 21827949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 271 - 333
Target Start/End: Original strand, 2836699 - 2836761
Alignment:
Q  271 cacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||    
T  2836699 cacatttttagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaagaaaa 2836761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 250 - 395
Target Start/End: Complemental strand, 14376836 - 14376691
Alignment:
Q  250 gatgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaa 348  Q
    |||||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | ||||||  ||| ||||||||||||||    
T  14376836 gatgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaatcaagaaaaatagaa 14376738  T
Q  349 gattttgaagaaagcacaaccgtgtcacgatttagagcacatgatga 395  Q
    |||||||| ||||||| |  |||||||||||||  |||||| |||||    
T  14376737 gattttgaggaaagcaaattcgtgtcacgatttgaagcacaggatga 14376691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 40916867 - 40916795
Alignment:
Q  274 atttttagagtcttttt---atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||||||   || |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40916867 atttttagagtcttttttttatcatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 40916795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 42061532 - 42061614
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | || |||  ||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  42061532 ttttgagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 42061614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 7270240 - 7270305
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaag 316  Q
    ||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  7270240 atgatgacagtctgtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaag 7270305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 4100413 - 4100346
Alignment:
Q  276 ttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||||||||||||||| ||||| || |||| ||||||||||||| ||||    
T  4100413 ttttagagtctttttatgatatttttgagttcacaggcaagattaagcagcaagaaaagcaaggaaaa 4100346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 30065584 - 30065643
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||    
T  30065584 atttttagagtctttttatgatatttttgaattcacaagcaagattaagcaacaagaaaa 30065643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 2837641 - 2837584
Alignment:
Q  286 tttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||    
T  2837641 tttttatgatattttggagttcacaagcaagcttaagcagcaataaaagcaagaaaaa 2837584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 28442181 - 28442053
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | || |||  ||| ||||||||||| ||||    
T  28442181 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataaga 28442083  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| ||  |||||||||||    
T  28442082 ttttgaagaaagcaaaattgtgtcacgatt 28442053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 7624303 - 7624366
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||| |||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  7624303 ttttgagttcacaggcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 7624366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 16185656 - 16185528
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| |||||    
T  16185656 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaaacaagcttaagcagcaagaaaagcaagaaaaatataagat 16185557  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| || ||||||||||||    
T  16185556 tttgaagaaagcaaaatcgtgtcacgatt 16185528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 35411675 - 35411805
Alignment:
Q  251 atgatgatagtctgtcattcca-catttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaag 349  Q
    ||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||  ||||||||||||||    
T  35411675 atgatgacagtctgtcatttcaacatttttagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaagaaaacaaagaaaaatagaag 35411774  T
Q  350 attttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||| || ||||||||||||    
T  35411775 attttgaagaaagcaaaatcgtgtcacgatt 35411805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 252 - 361
Target Start/End: Complemental strand, 19302364 - 19302255
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||||||||||||||    
T  19302364 tgatgatagtccgtcatttcatatttttagagtctttttatgatatttttgagttcacaagcaagcttaaacaacaaggaaagcgagaaaaatagaagat 19302265  T
Q  352 tttgaagaaa 361  Q
    ||||||||||    
T  19302264 tttgaagaaa 19302255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 9380012 - 9380102
Alignment:
Q  253 gatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  9380012 gatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcaataagaaaagcaagaaaaa 9380102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 264 - 350
Target Start/End: Original strand, 31548563 - 31548649
Alignment:
Q  264 gtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||| |||||    
T  31548563 gtcatttcacatttttagagtctttttatgatatttttgagttcacaaccaagcttaagcagtaagaaaagcaagaaaaattgaaga 31548649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 34984758 - 34984668
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaa 342  Q
    |||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  34984758 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaa 34984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 53814971 - 53815062
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  53814971 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 53815062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 252 - 342
Target Start/End: Original strand, 54460367 - 54460457
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaa 342  Q
    |||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||    
T  54460367 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaatcttaagcaacaagaaaagaaagaaaa 54460457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 16243188 - 16243257
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  16243188 atttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaa 16243257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 54736828 - 54736759
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  54736828 atttttagagtctttttatgatacttttgagttcacaagcaagcttaagcaacaagaaaagcaaaaaaaa 54736759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 29344773 - 29344674
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttt-ttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||| |||||||||||||||||||||||||||| || |||| ||||||||||||||||||| |||||    
T  29344773 tgatgacagtcagtcattcactatttttagagtctttcttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaattgaaga 29344674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 344
Target Start/End: Original strand, 43808900 - 43808970
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaat 344  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||||||    
T  43808900 atttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaaaaaaaat 43808970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 52198351 - 52198433
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | ||||||  |||||||||||||||||||||||||||||||||| || | ||||||||||    
T  52198351 ttttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaagattttgaagaaagcaaaatcatgtcacgatt 52198433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 538015 - 538143
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||| |||||||||| |||| || | || |||  ||| ||||||||||||||||    
T  538015 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaaacaagtttaaacagcaaagaaaacaagaaaaatagaaga 538113  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  538114 ttttgaagaaagcaaaatcgtgtcacgatt 538143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 10880798 - 10880863
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaaga 339  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  10880798 atttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaaga 10880863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 265 - 354
Target Start/End: Complemental strand, 19305534 - 19305445
Alignment:
Q  265 tcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagatttt 354  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||| | || |||| ||||| ||||||||||||| ||||    
T  19305534 tcatttcatatttttagagtctttttataatatttttgagttcacaagcaagcttaaacagcaaggaaagcgagaaaaatagaagttttt 19305445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 23299553 - 23299425
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| || | || |||  ||| ||||| ||||||||||    
T  23299553 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaaga 23299455  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  23299454 ttttgaagaaagcaaaatcgtgtcacgatt 23299425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 362
Target Start/End: Original strand, 3839790 - 3839903
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt---atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaa 348  Q
    |||||| |||| |||||||   ||||||||||| |||||   ||||||||||||||||||||||||||||| |||| ||||||||||||||||||  |||    
T  3839790 tgatgacagtcagtcattcactatttttagagtttttttttaatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaaccgaa 3839889  T
Q  349 gattttgaagaaag 362  Q
    ||  ||||||||||    
T  3839890 gaaattgaagaaag 3839903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 10107568 - 10107489
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacg 377  Q
    |||||||||||||||||||||| | ||||||  ||| |||||||||||||||||||||||||||||| || |||||||||    
T  10107568 ttttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacg 10107489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 10884018 - 10884146
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| || | || |||  ||| ||| ||||||||||||    
T  10884018 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaatgaaaacaaaaaaaatagaaga 10884116  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||| |||||||||| || ||||||||||||    
T  10884117 tttcgaagaaagcaaaatcgtgtcacgatt 10884146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 6921890 - 6922018
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||||| |||||| |||||||||| ||||||||||||||| || | || |||  ||| ||||| ||||| ||||    
T  6921890 tgatgacagtcagtcattcactatttttagagcctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatataaga 6921988  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  6921989 ttttgaagaaagcaaaatcgtgtcacgatt 6922018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 41976320 - 41976412
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||| |||| |||||||   ||||||||||| ||||||| ||||||||||||||||||||||| || | || |||||||||||| |||||    
T  41976320 atgatgacagtcagtcattcgctatttttagagtgtttttataatatttttgagttcacaagcaagattaaacagcaagaaaagcaacaaaaa 41976412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 55032833 - 55032774
Alignment:
Q  336 aagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatttagagcacatgatga 395  Q
    ||||||||||||||||||||||||||||| || |||||||||||||  ||||||||||||    
T  55032833 aagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatttgaagcacatgatga 55032774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 18645690 - 18645613
Alignment:
Q  303 agttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||| ||||||| | || |||  ||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  18645690 agttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 18645613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 20729477 - 20729395
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||| |||| |||||||   ||||||||||| ||||| ||||||||||| ||||||||||||||||| |||| ||||||||    
T  20729477 tgatgacagtcagtcattcgctatttttagagttttttttatgatattttttagttcacaagcaagcttaagcagcaagaaaa 20729395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 17532623 - 17532565
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttga 356  Q
    |||||||||||||||||||||| | ||||||  ||| ||||||||| ||||||||||||    
T  17532623 ttttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaaaagaagattttga 17532565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 260 - 364
Target Start/End: Complemental strand, 246342 - 246238
Alignment:
Q  260 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaaga 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  246342 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaaga 246243  T
Q  360 aagca 364  Q
    |||||    
T  246242 aagca 246238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 290985 - 291091
Alignment:
Q  274 atttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtg 372  Q
    |||||||| ||| |||| ||||||||||  |||||||||||||| || | ||||||  ||| |||||||||||||||||||||| ||||||| |   |||    
T  290985 atttttagtgtcattttcatgatatttta-agttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaagattttgaggaaagcaaatttgtg 291083  T
Q  373 tcacgatt 380  Q
    ||||||||    
T  291084 tcacgatt 291091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 9953036 - 9953164
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  9953036 tgatgacagtctgtcatttcacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaatagaagat 9953135  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| || | ||||||||||    
T  9953136 tttgaagaaagcaaaatcatgtcacgatt 9953164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 13004434 - 13004509
Alignment:
Q  286 tttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  13004434 tttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaa 13004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 10289208 - 10289277
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  10289208 atttttagagtctttttatgatatttttgagttcacaagcaagattaagcaacaagaaaagcaagaaaaa 10289277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 28666176 - 28666095
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  28666176 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaa 28666095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 5739190 - 5739061
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt--atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaag 349  Q
    |||||| |||| |||||||   ||||||||||| |||||  ||||||| || |||||||||||||||  | | || |||  |||||||||||||||||||    
T  5739190 tgatgacagtcagtcattcactatttttagagttttttttcatgatatgtt-gagttcacaagcaagtctaaacagcaaagaaagcaagaaaaatagaag 5739092  T
Q  350 attttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||| || ||||||||||||    
T  5739091 attttgaagaaagcaaaatcgtgtcacgatt 5739061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 2371448 - 2371541
Alignment:
Q  286 tttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||| ||||||| ||||||| || | || |||  ||| |||||||||||||||||||||||||||||| || ||| ||||||||    
T  2371448 tttttatgatatttt-gagttcataagcaagtttaaacagcaaataaaacaagaaaaatagaagattttgaagaaagcaaaatcgtatcacgatt 2371541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 23379768 - 23379685
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| |||||||| | ||||||  ||| |||||||||||||||| |||||||||||||| ||  |||||||||||    
T  23379768 ttttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaattgtgtcacgatt 23379685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 31071540 - 31071603
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||| ||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  31071540 ttttgagttcacgagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 31071603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 20181295 - 20181340
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctt 319  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  20181295 atttttagagtccttttgtgatatttttgagttcacaagcaagctt 20181340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 22154696 - 22154651
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctt 319  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  22154696 atttttagagtccttttgtgatatttttgagttcacaagcaagctt 22154651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 12991604 - 12991556
Alignment:
Q  302 gagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||||||||||||||| | |||||||||||||||||||||| |||||    
T  12991604 gagttcacaagcaagcttaatcaacaagaaaagcaagaaaaattgaaga 12991556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 23389107 - 23389024
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| |||||||| | || |||  ||| |||||||||||||||| |||||||||||||| ||  |||||||||||    
T  23389107 ttttgagttcacatgcaagcttaaacagcaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaattgtgtcacgatt 23389024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 380
Target Start/End: Original strand, 34501462 - 34501542
Alignment:
Q  300 ttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||||| || | || |||  ||| ||||||||| |||||||||||| ||||||| ||  |||||||||||    
T  34501462 ttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaagattttgatgaaagcaaaattgtgtcacgatt 34501542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 28112704 - 28112641
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| |  | |||| |||||| ||||| | ||||||||||||||||    
T  28112704 ttttgagttcacaagcaagcttaaaaagcaaggaaagcatgaaaagttgaagattttgaagaaa 28112641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 359
Target Start/End: Original strand, 6512442 - 6512503
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaaga 359  Q
    |||||||||||||||||||||| | || |||| ||| || ||||| | ||||||||||||||    
T  6512442 ttttgagttcacaagcaagcttaaacagcaaggaaaacatgaaaagttgaagattttgaaga 6512503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 13022231 - 13022190
Alignment:
Q  302 gagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||||||| | |||||||||||||| ||||||    
T  13022231 gagttcacaagcaagcttaaacaacaagaaaagcatgaaaaa 13022190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 260 - 364
Target Start/End: Original strand, 14571034 - 14571138
Alignment:
Q  260 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaaga 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  14571034 gtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaaga 14571133  T
Q  360 aagca 364  Q
    |||||    
T  14571134 aagca 14571138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 5680468 - 5680597
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  5680468 atgatgacagactgtcattccacatttttagagtctttttatgatatttttgagttcataagcaagcttaaacaacaagaaaagcaagaaaaatagaaga 5680567  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||| |||||| || | ||||||||||    
T  5680568 ttttgaaaaaagcaaaatcatgtcacgatt 5680597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 29324001 - 29324088
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  29324001 atttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 29324088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 44809882 - 44809795
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  44809882 atttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 44809795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 3718358 - 3718427
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3718358 atttttagagtatttttatgatatttttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaa 3718427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 40794214 - 40794283
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  40794214 atttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 40794283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 49269735 - 49269863
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| |||| ||||||  ||||||||||||| |||||||||||||||||||||  ||| ||||||| | |  |||  |||||||||||||||||||||    
T  49269735 tgatgacagtcagtcattttacatttttagagtttttttatgatatttttgagttagcaaacaagcttaaacggcaaagaaagcaagaaaaatagaagat 49269834  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| || ||| ||||||||    
T  49269835 tttgaagaaagcaaaatcgtatcacgatt 49269863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 253 - 343
Target Start/End: Original strand, 21418980 - 21419070
Alignment:
Q  253 gatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| ||| |||||||   |||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  21418980 gatgattgtcagtcattcgctatttttagtgtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 21419070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 18910604 - 18910732
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| |||||||||||||| ||| | ||||||  ||||||||||||||||||||    
T  18910604 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaaacttaaacaacaaagaaagcaagaaaaatagaaga 18910702  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  18910703 ttttgaagaaagcaaaatcgtgtcacgatt 18910732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 27013229 - 27013321
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttt-tatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   |||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  27013229 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaagcaagaaaaa 27013321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 34320822 - 34320738
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaag 358  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||| |||||| |||||||| ||||||||||||    
T  34320822 atttttagagtctttttatgataattttgagttcacaagcaagcttaaacaataaggaaagcatgaaaaatacaagattttgaag 34320738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 12782106 - 12782197
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   |||||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  12782106 tgatgacagtcagtcattcgctatttttagagtcattttatgatatttttgagtttacaagcaagcttaagcagcaagaaaagcaagaaaaa 12782197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 12237400 - 12237482
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | ||||||  ||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  12237400 ttttgagttcacaagcaagcttaaacaacaaagaaagcaagagaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 12237482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 19865597 - 19865515
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | ||||||  ||||||||||||||||||||||||||||||| || || ||||||||||||    
T  19865597 ttttgagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaagattttgaagaaaacaaaatcgtgtcacgatt 19865515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 40617762 - 40617684
Alignment:
Q  302 gagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| || |||| |||||||    
T  40617762 gagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatagaagattttgaagaaggcaaaatcgtgccacgatt 40617684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 5669628 - 5669756
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | ||||||  ||| ||||||||||||||||    
T  5669628 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 5669726  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  5669727 ttttgaagaaagcaaaatcgtgtcacgatt 5669756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 15431164 - 15431292
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| || | || |||  ||| ||||| ||||||||||    
T  15431164 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaaga 15431262  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  15431263 ttttgaagaaagcaaaatcgtgtcacgatt 15431292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 15437778 - 15437906
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| || | || |||  ||| ||||| ||||||||||    
T  15437778 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagagaaatagaaga 15437876  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  15437877 ttttgaagaaagcaaaatcgtgtcacgatt 15437906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 33410962 - 33410834
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | ||||||  ||| ||||||||||||||||    
T  33410962 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 33410864  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  33410863 ttttgaagaaagcaaaatcgtgtcacgatt 33410834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 395
Target Start/End: Complemental strand, 37104195 - 37104098
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatttagagcacatgatga 395  Q
    |||||||||||||||||||||| | || |||  ||| |||||||||||||||||||||||||||||| || |||||||||||||  |||||| |||||    
T  37104195 ttttgagttcacaagcaagcttaaacagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatttgaagcacaggatga 37104098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 15430766 - 15430674
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  15430766 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 15430674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 15437380 - 15437288
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||| ||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  15437380 tgatgacagtcagtcattcgttattttcagagtcttttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 15437288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 9716950 - 9717079
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaag 349  Q
    ||||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | ||||||  ||| |||||||||||||||    
T  9716950 atgatgacagtcggtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaag 9717048  T
Q  350 attttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||| |||||||||| || ||||||||||||    
T  9717049 atttcgaagaaagcaaaatcgtgtcacgatt 9717079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 3798796 - 3798668
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | || |||  ||||||||||||||||||||    
T  3798796 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaagcaagaaaaatagaaga 3798698  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || | ||||||||||    
T  3798697 ttttgaagaaagcaaaatcttgtcacgatt 3798668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 53010458 - 53010377
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    ||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||||    
T  53010458 tgatgatagtcagtcattcattatttttagagtctttttatgatatttttgagttcacaagtaagattaagcagcaagaaaa 53010377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 19826701 - 19826793
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttt-tgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||||||||||||||||||| ||||| |||||||||||| ||| || |||||||||||||||||||||||    
T  19826701 tgatgacagtcagtcattcgctatttttagagtctttttatgaaattttttgagttcacaagtaagattaagcaacaagaaaagcaagaaaaa 19826793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 24045057 - 24044966
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||||||||||||| |||| || |||| ||||||||||||| ||||    
T  24045057 tgatgacagtcagtcattcgttatttttagagtctttttttgatatttttgagttcacaaacaagattaagcagcaagaaaagcaaggaaaa 24044966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 250 - 340
Target Start/End: Original strand, 44163999 - 44164090
Alignment:
Q  250 gatgatgatagtctgtcattccacatttttagagtctttt-tatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaa 340  Q
    |||||||| |||| |||||||   ||||||| |||||||| ||||||||||||||||||||||||||| || |||| |||||||||||||||    
T  44163999 gatgatgacagtcagtcattcactatttttaaagtcttttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaa 44164090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 56194768 - 56194831
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||| |||||| ||||||||||||||||||||||||    
T  56194768 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaagattttgaagaaa 56194831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 56198075 - 56198137
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaa 360  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||||    
T  56198075 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaagattttgaagaa 56198137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 52007431 - 52007350
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||| |||| |||||||   ||||||||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||    
T  52007431 tgatgacagtcagtcattcgctatttttagagtctttttatgatattgttgagttcaaaagcaagcttaagcagcaagaaaa 52007350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 27677944 - 27677874
Alignment:
Q  274 atttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| || |||| |||||||||||| |||||    
T  27677944 atttttagagtcttttttatgatatttttgagttcacaatcaagattaagcagcaagaaaagcaaaaaaaa 27677874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 27692003 - 27691933
Alignment:
Q  274 atttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||| | ||||||||||| |||||||||||| || |||| ||||||||||||||||||    
T  27692003 atttttagagtcttttttacgatatttttgaattcacaagcaagattaagcagcaagaaaagcaagaaaaa 27691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 380
Target Start/End: Complemental strand, 5721920 - 5721843
Alignment:
Q  303 agttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||| ||||||| | || |||  ||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  5721920 agttcacaaacaagcttaaacagcaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcgtgtcacgatt 5721843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 361
Target Start/End: Original strand, 33926169 - 33926230
Alignment:
Q  300 ttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  33926169 ttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 33926230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 15813036 - 15812973
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||| || | ||||||| |||||| |||||||| |||||||||||||||    
T  15813036 ttttgagttcacaagcaagtttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 15812973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 333
Target Start/End: Original strand, 35509229 - 35509280
Alignment:
Q  282 agtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||||||    
T  35509229 agtctttatatgatatttttgagttcacaagcaagattaagcaacaagaaaa 35509280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 19861241 - 19861159
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | || |||  ||||||||||||||| ||||||||||||||  || ||  |||||||||||    
T  19861241 ttttgagttcacaagcaagcttaaacagcaaagaaagcaagaaaaatataagattttgaagaacacaaaattgtgtcacgatt 19861159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 53093767 - 53093849
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | || |||| |||||| ||||| | ||||||||||||||||| | || |||| |||||||    
T  53093767 ttttgagttcacaagcaagcttaaacagcaaggaaagcatgaaaagttgaagattttgaagaaagtaaaatcgtgacacgatt 53093849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 15405901 - 15405793
Alignment:
Q  249 tgatgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaataga 347  Q
    ||||||||| |||| |||||||   |||||||| ||| |||| ||||| |||| |||||||||||||||||| | ||||||| || ||| |||||||| |    
T  15405901 tgatgatgaaagtcagtcattctttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaacgcatgaaaaataca 15405803  T
Q  348 agattttgaa 357  Q
    ||||||||||    
T  15405802 agattttgaa 15405793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 47114822 - 47114885
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||| ||| ||| || |||||||| |||||||||||||||    
T  47114822 ttttgagttcacaagcaagcttaaacaataaggaaaacatgaaaaatacaagattttgaagaaa 47114885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 19819950 - 19820032
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgata-tttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||| |||| |||||||   ||||||| ||||||||||||||| |||||||||||||||||||| || || | ||||||||    
T  19819950 tgatgacagtcagtcattcgctatttttaaagtctttttatgatattttttgagttcacaagcaagattaagtagcaagaaaa 19820032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 48014882 - 48014841
Alignment:
Q  302 gagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||   |||||||||||||||||||||    
T  48014882 gagttcacaagcaagcttatacaacaagaaaagcaagaaaaa 48014841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 252 - 362
Target Start/End: Original strand, 197242 - 197352
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  197242 tgatgacagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagcataagcagcaagaaaagcaagaaaaatagaagat 197341  T
Q  352 tttgaagaaag 362  Q
    |||||||||||    
T  197342 tttgaagaaag 197352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 4e-45; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 8276012 - 8276140
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  8276012 tgatgacagtctgtcattccatatttttagagtctttttatgatatttttgagttcacaagcaagctcaagcagcaagaaaagcaagaaaaatagaagat 8276111  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||| || || ||||||| ||||    
T  8276112 tttgaagaaaacaaaatcgtgtcatgatt 8276140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 362
Target Start/End: Complemental strand, 20081640 - 20081530
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| |||| |||||||   ||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||  ||||     
T  20081640 tgatgacagtcagtcattcactatttttagagtgtttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatcaaagaa 20081541  T
Q  352 tttgaagaaag 362  Q
     ||||||||||    
T  20081540 attgaagaaag 20081530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 26556509 - 26556638
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaag 349  Q
    ||||||| |||| |||||||   |||||||| ||| |||| |||||||||| |||||||||||||||||| | ||||||  |||||||||||||||||||    
T  26556509 atgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaagcaagaaaaatagaag 26556607  T
Q  350 attttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||| || ||||||||||||    
T  26556608 attttgaagaaagcaaaatcgtgtcacgatt 26556638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 17729995 - 17730071
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||    
T  17729995 atttttagagtccttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaatcgaaga 17730071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 343
Target Start/End: Complemental strand, 45291475 - 45291383
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  45291475 atgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 45291383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 9865642 - 9865551
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||    
T  9865642 tgatgacagtcagtcattcgctatttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaagcaagaaaaa 9865551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 45288138 - 45288047
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  45288138 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 45288047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 9274034 - 9273944
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaa 342  Q
    |||||| |||| |||||| |||||||| | ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| |||||||    
T  9274034 tgatgacagtccgtcatttcacattttcaaagtctttttatgatattttggagttcacaagcaagcttaagcaccaagaaaagaaagaaaa 9273944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 4596902 - 4596833
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| || |||||||||||||||||||||||    
T  4596902 atttttagagtctttttatgatatttttgagctcacaagaaagattaagcaacaagaaaagcaagaaaaa 4596833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 4694745 - 4694814
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |||| ||||||||| ||||||||    
T  4694745 atttttagagtctttctatgatatttttgagttcacaagcaagattaagcagcaagaaaagtaagaaaaa 4694814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 9080398 - 9080467
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||||  |||||||||||||||||||||||| |||| |||||||| |||||||||    
T  9080398 atttttagagtctttttatgtaatttttgagttcacaagcaagcttaagcagcaagaaaaccaagaaaaa 9080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 10344638 - 10344707
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||||||||| |||||    
T  10344638 atttttagagtcttcttatgaaatttttgagttcacaagcaagcttaagcagcaagaaaagcaaaaaaaa 10344707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 16164935 - 16164998
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  16164935 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 16164998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 48644662 - 48644725
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  48644662 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 48644725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 251 - 380
Target Start/End: Original strand, 10431385 - 10431514
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaag 349  Q
    ||||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | || |||  ||| ||||||||||| |||    
T  10431385 atgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatataag 10431483  T
Q  350 attttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||| ||  |||||||||||    
T  10431484 attttgaagaaagcaaaattgtgtcacgatt 10431514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 4542074 - 4542202
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | || |||  ||| ||||||||||||||||    
T  4542074 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaaga 4542172  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||| ||||||| |   |||||||||||    
T  4542173 ttttgaggaaagcaaatttgtgtcacgatt 4542202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 6602667 - 6602730
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||| ||||||||||||||||| | ||||||| |||| | |||||||| |||||||||||||||    
T  6602667 ttttaagttcacaagcaagcttaaacaacaaggaaagtatgaaaaatacaagattttgaagaaa 6602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 2442231 - 2442149
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||||||| || | || |||  ||| |||||||||||||||||| ||| ||||||| |  ||||||||||||    
T  2442231 ttttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagattctgaggaaagcaaattcgtgtcacgatt 2442149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 29644308 - 29644180
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagat 351  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||     
T  29644308 tgatgacagtctgtcattccacatttatagagtctttttatgatatttttgagttcacaagcaaacttaagcagcaaaaaaagcaagaaaaatagaagac 29644209  T
Q  352 tttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||| | || ||||||||||||    
T  29644208 tttgaagaaagtaaaatcgtgtcacgatt 29644180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 27537191 - 27537104
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  27537191 atttttatagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 27537104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 45961685 - 45961598
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||| |||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  45961685 atttttagagtcttgttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 45961598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 252 - 350
Target Start/End: Complemental strand, 41059234 - 41059135
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||| |||||    
T  41059234 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcgcaagcaagcttaagcagcaagaaaagcaagaaaaatcgaaga 41059135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 339
Target Start/End: Original strand, 2404722 - 2404809
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaaga 339  Q
    |||||| |||| |||||||   ||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||    
T  2404722 tgatgacagtcagtcattcgctatttttagagtctttttataatatttttgagttcacaagcaagattaagcagcaagaaaagcaaga 2404809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 2793321 - 2793427
Alignment:
Q  274 atttttagagtcttttta-tgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtg 372  Q
    |||||||||||||||||| ||||||||| ||||||||||||||| || | ||  ||  ||| ||||||||||||||||||| |||||||||| || ||||    
T  2793321 atttttagagtctttttaatgatatttt-gagttcacaagcaagtttaaacagtaaagaaaacaagaaaaatagaagatttcgaagaaagcaaaatcgtg 2793419  T
Q  373 tcacgatt 380  Q
    ||||||||    
T  2793420 tcacgatt 2793427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 49499522 - 49499440
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||| |||||||| | ||||||  ||| |||||||||||||||||||||||||||||| || | ||||||||||    
T  49499522 ttttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagattttgaagaaagcaaaatcatgtcacgatt 49499440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 6071854 - 6071791
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||||||| || |||||||| |||||||||||||||    
T  6071854 ttttgagttcacaagcaagcttaaacaacaagaaaaacatgaaaaatacaagattttgaagaaa 6071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 31204060 - 31204123
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  31204060 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 31204123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 42021743 - 42021812
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||||||||| |||||  |||||||||||||||| || |||| ||| ||||||||||||||    
T  42021743 atttttagagtctttttataatattactgagttcacaagcaagtttaagcagcaataaaagcaagaaaaa 42021812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 21019367 - 21019287
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||| |||| |||||||   |||||||||||||||| ||||||||||||||||| ||| ||||||| |||| ||||||||    
T  21019367 tgatgacagtcagtcattcgctatttttagagtctttt-atgatatttttgagttcgcaaccaagcttaagcagcaagaaaa 21019287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 380
Target Start/End: Complemental strand, 1951297 - 1951217
Alignment:
Q  300 ttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||||| || | || |||  ||| |||||||||||||||||||  ||||||||| || ||||||||||||    
T  1951297 ttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaatagaagatttcaaagaaagcaaaatcgtgtcacgatt 1951217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 275 - 343
Target Start/End: Complemental strand, 21108370 - 21108302
Alignment:
Q  275 tttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||||||| |||||||||||||||  ||| ||||||| || |||  ||||||||||||||||||    
T  21108370 tttttagagtcttcttatgatatttttgaactcaaaagcaagattaagctgcaagaaaagcaagaaaaa 21108302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 16788411 - 16788516
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgt 373  Q
    ||||||||| |||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |||||    
T  16788411 atttttagaatctttt-atgataattttgagttcacaagcaagcttaagcaacaagaaaagcaagaaaaatataagattttgatgaaagcacaatcgtgt 16788509  T
Q  374 cacgatt 380  Q
    |||||||    
T  16788510 cacgatt 16788516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 251 - 380
Target Start/End: Complemental strand, 25140041 - 25139912
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    ||||||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | |  |||  ||||||||||||||||||||    
T  25140041 atgatgacagtcagtcattccacaattttagagtttttttatgatatttttgagttcacaagtaagcttaaacggcaaagaaagcaagaaaaatagaaga 25139942  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||| |||||||||| || ||||||||||||    
T  25139941 tttcgaagaaagcaaaatcgtgtcacgatt 25139912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 361
Target Start/End: Complemental strand, 31430616 - 31430529
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  31430616 atttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 31430529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 361
Target Start/End: Original strand, 38014658 - 38014745
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  38014658 atttttagagtctttttatgataattttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 38014745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 10599950 - 10600042
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||| |||| |||||||   ||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  10599950 atgatgacagtcagtcattcactatttttagaatctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaaacaagaaaaa 10600042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 25873203 - 25873331
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||| ||||||||||||||| || | ||||||  ||| ||||| ||||||||||    
T  25873203 tgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagagaaatagaaga 25873301  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||| | || ||||||||||||    
T  25873302 ttttgaagaaagaaaaatcgtgtcacgatt 25873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 3874482 - 3874573
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   |||||||||||||||||| ||||||||||||||||||| |||| || |||| ||||||||||||||||||    
T  3874482 tgatgacagtcagtcattcattatttttagagtctttttaggatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaa 3874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 380
Target Start/End: Original strand, 15466192 - 15466298
Alignment:
Q  274 atttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtg 372  Q
    |||||||| ||| |||| |||||||||| |||||||||||||||||| | ||||||  ||| ||||| |||||||||||||||||||||||| || ||||    
T  15466192 atttttagtgtcattttcatgatatttt-gagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaagattttgaagaaagcaaaatcgtg 15466290  T
Q  373 tcacgatt 380  Q
    ||||||||    
T  15466291 tcacgatt 15466298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 13972791 - 13972725
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaa 340  Q
    |||||||||||||||||||||||||||||||||||||| |||| || |||| |||||||||||||||    
T  13972791 atttttagagtctttttatgatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaa 13972725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 380
Target Start/End: Original strand, 25869830 - 25869963
Alignment:
Q  247 actgatgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaata 345  Q
    |||| |||||| |||| |||||||   ||||||||||||||||| |||||||||| ||||||||||| ||| || | ||||||  ||| ||||| |||||    
T  25869830 actgttgatgacagtcagtcattcactatttttagagtctttttcatgatatttt-gagttcacaagaaagtttaaacaacaaagaaaacaagagaaata 25869928  T
Q  346 gaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||||||||||||||||| | || ||||||||||||    
T  25869929 gaagattttgaagaaagaaaaatcgtgtcacgatt 25869963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 274 - 343
Target Start/End: Original strand, 13136784 - 13136853
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||| ||||||||||||||||||||||||| |||| || |||| ||||||||||||||||||    
T  13136784 atttttagagtcattttatgatatttttgagttcacaaacaagattaagcagcaagaaaagcaagaaaaa 13136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 274 - 333
Target Start/End: Original strand, 43722926 - 43722985
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||    
T  43722926 atttttagagtctttttatgatatttttgagttcacaagcaagattaagcagcaagaaaa 43722985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 5665852 - 5665902
Alignment:
Q  274 atttttagagtctttttatgatatttttgagttcacaagcaagctttagca 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5665852 atttttagagtctttttatgatatttttgagttcacaagcaagcttaagca 5665902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 287 - 361
Target Start/End: Complemental strand, 31428414 - 31428340
Alignment:
Q  287 ttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||| ||||||||||||||||||| || | ||||||| |||||| |||||||| |||||||||||||||    
T  31428414 ttttatgataattttgagttcacaagcaagtttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 31428340  T

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Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 38006240 - 38006158
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| ||||||| | ||||||  ||||||||| |||||||||||||||||||||||| || ||||| ||||||    
T  38006240 ttttgagttcacaaacaagcttaaacaacaaagaaagcaagagaaatagaagattttgaagaaagcaaaatcgtgtgacgatt 38006158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 30275691 - 30275563
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    ||||||||||| ||||||| | |||||||| ||| |||| |||||||||| || ||||||| |||| || | ||||||  ||| ||||||||||||||||    
T  30275691 tgatgatagtcagtcattcaatatttttagtgtcattttcatgatatttt-gaattcacaaacaagtttaaacaacaaagaaaacaagaaaaatagaaga 30275593  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||| ||||||| |  ||||||||||||    
T  30275592 ttttgaggaaagcaaattcgtgtcacgatt 30275563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 25821872 - 25821789
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | ||||||  ||| |||||||||||||||| |||||||||||||| || ||||||| ||||    
T  25821872 ttttgagttcacaagcaagcttaaacaacaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaatcgtgtcaagatt 25821789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 36985689 - 36985626
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||| ||||||  |||||||||||||||||||||||    
T  36985689 ttttgagttcacaagcaagcttaaacaacaaggaaagcagaaaaaatagaagattttgaagaaa 36985626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 45453097 - 45453160
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||| |||||||||||||||    
T  45453097 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatacaagattttgaagaaa 45453160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 5104974 - 5105032
Alignment:
Q  275 tttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||||||||| ||||||||||||||||||||||||||||||| || |||| ||||||||    
T  5104974 tttttagagtttttttatgatatttttgagttcacaagcaagattaagcagcaagaaaa 5105032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 380
Target Start/End: Complemental strand, 36809435 - 36809307
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||||||| || | ||||||  ||| ||||||||||||||||    
T  36809435 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaagcaagtttaaacaacaaagaaaacaagaaaaatagaaga 36809337  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||| ||||||| |   |||||||||||    
T  36809336 ttttgaggaaagcaaatttgtgtcacgatt 36809307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 277 - 333
Target Start/End: Original strand, 6825999 - 6826055
Alignment:
Q  277 tttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaa 333  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||    
T  6825999 tttaaagtctttttatgatatttttgagttcacaagcaagattaagcatcaagaaaa 6826055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 395
Target Start/End: Original strand, 29439643 - 29439738
Alignment:
Q  300 ttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatttagagcacatgatga 395  Q
    ||||||||||||||||| || | || |||  ||| ||||||||| ||||||||| |||||||||| || |||||||||||||  |||||| |||||    
T  29439643 ttgagttcacaagcaagtttaaacagcaaagaaaacaagaaaaaaagaagatttcgaagaaagcaaaatcgtgtcacgatttgaagcacaggatga 29439738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 361
Target Start/End: Original strand, 45456346 - 45456409
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaa 361  Q
    |||||||||||||||||||||| | ||||||  |||||| |||||||| |||||||||||||||    
T  45456346 ttttgagttcacaagcaagcttaaacaacaaagaaagcatgaaaaatacaagattttgaagaaa 45456409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 26358672 - 26358800
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    |||||| |||| |||||||   |||||||| ||| |||| |||||||||| ||||||||||| ||| || | || |||  ||  ||||||||||||||||    
T  26358672 tgatgacagtcagtcattcactatttttagtgtcattttcatgatatttt-gagttcacaaggaagtttaaacagcaaagaagacaagaaaaatagaaga 26358770  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    ||| |||||||||| || ||||||||||||    
T  26358771 tttcgaagaaagcaaaatcgtgtcacgatt 26358800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 252 - 380
Target Start/End: Original strand, 26253 - 26373
Alignment:
Q  252 tgatgatagtctgtcattccacatttt-tagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga 350  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||         |||| |||||||||||||    
T  26253 tgatgatagtctgtcattccacattttttagagtctttttatgatatttttgagttcacaagcaaacataagc---------agcatgaaaaatagaaga 26343  T
Q  351 ttttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||| || ||||||||||||    
T  26344 ttttgaagaaagcaaaatcgtgtcacgatt 26373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 251 - 343
Target Start/End: Original strand, 1044 - 1136
Alignment:
Q  251 atgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||||| ||||||| ||| |||||| |||| ||||||||||||||||||    
T  1044 atgatgacagtcagtcatttcacatttttagagtctttttatgatattttggagttcataaggaagcttaagcaccaagaaaagcaagaaaaa 1136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 4563 - 4654
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||    
T  4563 tgatgacagtcagtcattcactatttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaatcaagaaaaa 4654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 4396 - 4329
Alignment:
Q  276 ttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  4396 ttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 4329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 11526 - 11459
Alignment:
Q  276 ttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  11526 ttttagagtctttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 11459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 1036 - 969
Alignment:
Q  276 ttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  1036 ttttagagtatttttatgatatttttgagttcacaagcaagcttaagcagcaagaaaagcaagaaaaa 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 6554 - 6462
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaa 343  Q
    |||||| |||| |||||||   ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  6554 tgatgacagtcagtcattcgctatttttagagtcttttttatgatatttttgagttcacaggcaagcttaagcaacaagaaaagcaagaaaaa 6462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 342
Target Start/End: Complemental strand, 4880 - 4790
Alignment:
Q  252 tgatgatagtctgtcattccacatttttagagtctttttatgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaa 342  Q
    |||||| |||| |||||||   |||||||||||||||||||||||||||||||||||||| |||| || |||| ||| ||||| |||||||    
T  4880 tgatgacagtcagtcattcgttatttttagagtctttttatgatatttttgagttcacaaacaagattaagcagcaaaaaaagaaagaaaa 4790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 298 - 380
Target Start/End: Original strand, 61643 - 61725
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaagaaagcacaaccgtgtcacgatt 380  Q
    |||||||||||||||||||||| | ||||||  ||| ||||| |||||||||||||| ||||||||| || ||||||||||||    
T  61643 ttttgagttcacaagcaagcttaaacaacaaagaaatcaagagaaatagaagattttaaagaaagcaaaatcgtgtcacgatt 61725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 358
Target Start/End: Original strand, 89011 - 89071
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaagattttgaag 358  Q
    |||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||    
T  89011 ttttgagttcacaagcaagcttaaacaacaaggaaagcatgaaaaatagaagattttgaag 89071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 18509 - 18588
Alignment:
Q  298 ttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaatagaaga-ttttgaagaaagcacaaccgtgtcac 376  Q
    ||||||||||||| |||||||| | ||||||  ||| |||||||||||||||| |||||||||||||| || ||||||||    
T  18509 ttttgagttcacatgcaagcttaaacaacaaagaaaacaagaaaaatagaagatttttgaagaaagcaaaaacgtgtcac 18588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 477 - 369
Alignment:
Q  249 tgatgatgatagtctgtcattccacatttttagagtcttttt-atgatatttttgagttcacaagcaagctttagcaacaagaaaagcaagaaaaataga 347  Q
    ||||||||| |||| |||||||   |||||||| ||| |||| ||||| |||| |||||||||||||||||| | ||||||| || ||| |||||||| |    
T  477 tgatgatgaaagtcagtcattctttatttttagtgtcattttcatgatgtttt-gagttcacaagcaagcttaaacaacaaggaacgcatgaaaaataca 379  T
Q  348 agattttgaa 357  Q
    ||||||||||    
T  378 agattttgaa 369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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