View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20435_low_19 (Length: 398)
Name: NF20435_low_19
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_19 |
 | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
| [»] scaffold0012 (2 HSPs) |
| | |
|
| [»] scaffold0536 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 15)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 7798122 - 7797753
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7798122 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
7798023 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
7798022 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
7797923 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7797922 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
7797823 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7797822 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
7797753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 8054935 - 8055304
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8054935 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
8055034 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
8055035 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
8055134 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8055135 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
8055234 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8055235 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
8055304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 28705570 - 28705201
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
28705570 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
28705471 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
28705470 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
28705371 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28705370 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
28705271 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
28705270 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
28705201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 46018979 - 46019348
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46018979 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
46019078 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
46019079 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
46019178 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46019179 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
46019278 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46019279 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
46019348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 49572615 - 49572984
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49572615 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
49572714 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
49572715 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaaggattgtc |
49572814 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
49572815 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
49572914 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
49572915 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
49572984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 46077590 - 46077221
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
46077590 |
cagagatgtcattaaagaggaaactattgagctcattaggaggggtctccaaaatagtaaaattctatgaatccatggtaaggctgaagttggcaagcca |
46077491 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
46077490 |
atcaacacttctgttgcctcctctcaaagtgtgatgaacctgaatctgccaattatgattcaaaatattttgaatacgcctaatgagcacaggggttgtc |
46077391 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46077390 |
ccattcatcttgcaattatttgttatcatgacaataaacaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
46077291 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46077290 |
caaggtacataccccacatctctgcaagaagagcatcacaagcgtcaatcttgcggacaaaacctttgat |
46077221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 33695730 - 33696099
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
33695730 |
cagagatgtcatcaaagaggagactattgagctcattatgaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
33695829 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33695830 |
atcaacacttctgttgtcttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
33695929 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |
|
|
| T |
33695930 |
ccattcatcttgcaattttttgttaccatgtcaataagcatttttgaatcactttcaacgcaaagctgagaaatatcgtccctccaagccaacattagac |
33696029 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33696030 |
caaggtacataccccacatatctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
33696099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 15 - 372
Target Start/End: Original strand, 43466894 - 43467242
Alignment:
| Q |
15 |
gatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatcca---tggtaaggctgaagttggcaagtcaa |
111 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | ||||||||||| ||| |||||| ||| | || | || |||||||||||||||| ||||||||| |
|
|
| T |
43466894 |
gatgtcatcaaagaggagactattgagctcattaggaggggtctcagaaagagtaaatttcaa-gatttcaatatggtaaggctgaagttagcaagtcaa |
43466992 |
T |
|
| Q |
112 |
tcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtcc |
211 |
Q |
| |
|
||| ||||| | ||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| | |||| | || |||||||| | |
|
|
| T |
43466993 |
tcaacacttatattgtcttctctccaagtgtgatgaacctgaatgcgccaattacgatttaaaatattttga-----ccgaataaacattggggttgttc |
43467087 |
T |
|
| Q |
212 |
cattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagacc |
311 |
Q |
| |
|
|||| || |||||||||||||||| |||| |||||||||| ||||||| |||||||||| | | ||||||||| ||||||| || ||||||||| |
|
|
| T |
43467088 |
catttattttgcaattatttgttaccatgccaataagcaactttgaattactttcaacgaacaactgagaaatgtcgtccct------caactctagacc |
43467181 |
T |
|
| Q |
312 |
aaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaa |
372 |
Q |
| |
|
| ||||||| | |||||||||||| ||||||||||||| || ||||||||||||||||| |
|
|
| T |
43467182 |
catgtacatacctgacatctctgcataaagagcatcacaaacgtcaatcttgcggacaaaa |
43467242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 371
Target Start/End: Complemental strand, 37752808 - 37752464
Alignment:
| Q |
27 |
gaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcacttctgttg |
126 |
Q |
| |
|
||||||||| ||||||| ||| | |||| ||||||||| | |||||||||| ||||| ||||||| ||||| |||||||||||| ||||| ||||| |
|
|
| T |
37752808 |
gaggaaactgttgagctgactcgaagggatctccaaaacaataaaattccaagaatctgtggtaagactgaaaccagcaagtcaatcaacacttttgttg |
37752709 |
T |
|
| Q |
127 |
ccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtcccattcatcttgcaat |
226 |
Q |
| |
|
| ||||| | |||| ||||||||| ||| |||| || | | ||| | |||| |||||| ||| | |||||| |||||||| ||||||||| |
|
|
| T |
37752708 |
ctttctcgccaagtatgatgaaccgcaatgcaccaactatggtccaagagatttctgatacgccaaatcaatgaaggggtcgtcccattagtcttgcaat |
37752609 |
T |
|
| Q |
227 |
tatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagaccaaggtacatatccca |
326 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||||||| || | || || || ||||| || || | |||||| | ||||| ||||| |||| | |||| |
|
|
| T |
37752608 |
tatttgtaaccatgtcaataaacaattttgaatcactctccatacagagatgtgaaattccatcacgccaagctagctctaaaccaaaatacaaacccca |
37752509 |
T |
|
| Q |
327 |
catctctgcatgaagagcatcacaagcgccaatcttgcggacaaa |
371 |
Q |
| |
|
||| |||||||| |||||||||||| | ||||||||||| ||||| |
|
|
| T |
37752508 |
catttctgcatgtagagcatcacaaacaccaatcttgcgcacaaa |
37752464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 28 - 161
Target Start/End: Complemental strand, 30902162 - 30902029
Alignment:
| Q |
28 |
aggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcacttctgttgc |
127 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||| | ||||||||| |||||||||||||||||||| || |||| |||||| |||||||| || | |
|
|
| T |
30902162 |
aggagactattgagctctctaggaggggtctccaaaacaacaaaattccaagaatccatggtaaggctgaaattagcaattcaatctgcacttctattcc |
30902063 |
T |
|
| Q |
128 |
cttctctcaaagtgtgatgaacctgaatctgcca |
161 |
Q |
| |
|
|||||| | | || |||||||||| ||| ||||| |
|
|
| T |
30902062 |
cttctcaccatgtatgatgaacctcaatgtgcca |
30902029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 350
Target Start/End: Original strand, 19552747 - 19552884
Alignment:
| Q |
212 |
cattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagacc |
311 |
Q |
| |
|
||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||| ||| | |||| ||||| ||||| || |||||| ||||| ||| |
|
|
| T |
19552747 |
cattcattttgcaattatttgtaaccatgtcaataactaattttgaatcactttcaatgcacaactgaaaaatatcgtccttcaaagccaactcta-acc |
19552845 |
T |
|
| Q |
312 |
aaggtacatatcccacatctctgcatgaagagcatcaca |
350 |
Q |
| |
|
||||||||| |||| |||||| || ||| ||||||||| |
|
|
| T |
19552846 |
taggtacataccccatatctctccacgaaaagcatcaca |
19552884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 204
Target Start/End: Complemental strand, 19552466 - 19552295
Alignment:
| Q |
33 |
actattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcacttctgttgccttct |
132 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| | |||||||| | | | || |||||||||||||| | |||||||||| | || |||| |||| | |
|
|
| T |
19552466 |
actattgagctcactaggaatggtctccaaaagaataaaattctaacatttcacggtaaggctgaagtcagtaagtcaatcaaaatttatgttacctttt |
19552367 |
T |
|
| Q |
133 |
ctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggg |
204 |
Q |
| |
|
||||||||||||||||||||||| | || || ||||||| || |||||| ||||| |||||||| |||| |
|
|
| T |
19552366 |
ctcaaagtgtgatgaacctgaatgcacaaactatgattcaagatgttttgattacgcccaatgagcataggg |
19552295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 201 - 379
Target Start/End: Complemental strand, 5321681 - 5321504
Alignment:
| Q |
201 |
aggggttgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagcc |
300 |
Q |
| |
|
|||||| || ||||| |||||||||||||||| | ||| ||||||||||||||||| |||||||| || | || || ||||| || || || ||||| |
|
|
| T |
5321681 |
aggggtcgttccattagtcttgcaattatttgtaaccatatcaataagcaattttgagtcactttccacatagagatgtgaaattccatcacttcaagct |
5321582 |
T |
|
| Q |
301 |
atctctagaccaaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttga |
379 |
Q |
| |
|
| ||| | ||| | |||| | | || || ||||||||||||||||||||| | ||||||||||| ||||| ||||||| |
|
|
| T |
5321581 |
agctccaaaccta-atacaaacctcaaatttctgcatgaagagcatcacaaactccaatcttgcgtacaaatcctttga |
5321504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 9886236 - 9886337
Alignment:
| Q |
50 |
gaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcacttctgttgccttctctcaaagtgtgatgaac |
149 |
Q |
| |
|
|||| |||||||||| | |||||||||| |||| ||||||||| |||| || |||||||||||||||| | |||||| |||| | |||| |||||||| |
|
|
| T |
9886236 |
gaggtgtctccaaaacaataaaattccaagaatttatggtaaggttgaaattagcaagtcaatcagcacatatgttgcattcttgccaagtatgatgaac |
9886335 |
T |
|
| Q |
150 |
ct |
151 |
Q |
| |
|
|| |
|
|
| T |
9886336 |
ct |
9886337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 41949637 - 41949579
Alignment:
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaac |
269 |
Q |
| |
|
||||| ||||||||||| || || ||||| |||||||||| |||||||||||| ||||| |
|
|
| T |
41949637 |
ccattgatcttgcaattgttagtaatcatatcaataagcacttttgaatcactctcaac |
41949579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 24785407 - 24785038
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
24785407 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
24785308 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
24785307 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
24785208 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24785207 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
24785108 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
24785107 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
24785038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 35195585 - 35195954
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
35195585 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
35195684 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
35195685 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
35195784 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35195785 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
35195884 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35195885 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
35195954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 117 - 266
Target Start/End: Original strand, 11596786 - 11596935
Alignment:
| Q |
117 |
acttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtcccattc |
216 |
Q |
| |
|
|||||| ||||||||||| ||||| || |||| |||| |||| |||||||||||| |||||||||||||| ||||||| | |||||||||||||||| |
|
|
| T |
11596786 |
acttcttttgccttctcttgaagtgagacaaacccgaatgtgcctattacgattcaagatattttgaatacgtcgaatgagtagaggggttgtcccattc |
11596885 |
T |
|
| Q |
217 |
atcttgcaattatttgttatcatgtcaataagcaattttgaatcactttc |
266 |
Q |
| |
|
|| | |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11596886 |
atttcgcaattatttgtatccatgtcaataagcaattttgaatcactttc |
11596935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 29514993 - 29515094
Alignment:
| Q |
19 |
tcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcac |
118 |
Q |
| |
|
||||||| ||||| ||||||||||||| | | |||||||||||||| | ||||| ||| |||||||||||||||||| | || ||||| |||||||||| |
|
|
| T |
29514993 |
tcatcaaagaggagactattgagctcattagaaggggtctccaaaacaacaaaatcccaagaatccatggtaaggctggaattagcaagccaatcagcac |
29515092 |
T |
|
| Q |
119 |
tt |
120 |
Q |
| |
|
|| |
|
|
| T |
29515093 |
tt |
29515094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 380
Target Start/End: Original strand, 40536544 - 40536647
Alignment:
| Q |
277 |
tgagaaataccgtccctccaagccatctctagaccaaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctt |
376 |
Q |
| |
|
||||| ||||| || ||||||||||| ||||| || | || | | |||||||||| ||||| |||||||||||||| ||||| |||||| |||||| | |
|
|
| T |
40536544 |
tgagatataccctctctccaagccatatctagtcccaaataaagaccccacatctcagcatgcagagcatcacaagctccaattttgcggcaaaaaccct |
40536643 |
T |
|
| Q |
377 |
tgat |
380 |
Q |
| |
|
|||| |
|
|
| T |
40536644 |
tgat |
40536647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 194
Target Start/End: Original strand, 8877019 - 8877103
Alignment:
| Q |
110 |
aatcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaat |
194 |
Q |
| |
|
|||||| |||| ||||| |||||| | |||| |||||||||||||| ||||| ||| |||| | | ||||||||||||| |||| |
|
|
| T |
8877019 |
aatcagtacttttgttgtcttctcaccaagtatgatgaacctgaatgtgccacatacaattctagagattttgaatacgccgaat |
8877103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 6792572 - 6792941
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6792572 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
6792671 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6792672 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
6792771 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6792772 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
6792871 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6792872 |
caaggtacataccccacatctctgcatgaagagcatcacacgcgccaatcttgcggacaaaacctttgat |
6792941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 6205661 - 6205292
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
6205661 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctaaagttggcaagcca |
6205562 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||| |
|
|
| T |
6205561 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacaaggattgtc |
6205462 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6205461 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactctagac |
6205362 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6205361 |
caaggtacataccccacatctctgcatgaagagcatcacacacgccaatcttgcggacaaaacctttgat |
6205292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 36732844 - 36732796
Alignment:
| Q |
218 |
tcttgcaattatttgttatcatgtcaataagcaattttgaatcactttc |
266 |
Q |
| |
|
|||||||||||||||| | ||||| ||||| |||||||||||||||||| |
|
|
| T |
36732844 |
tcttgcaattatttgtaaccatgttaataaacaattttgaatcactttc |
36732796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 11 - 219
Target Start/End: Original strand, 7500 - 7708
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7500 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagcca |
7599 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
7600 |
atcagcacttctgttgccttctcgcaaagtgtgatgaacctgaatccgccaattacgattcaaaatattttgaatacgccgaatgagcacagggattgtc |
7699 |
T |
|
| Q |
211 |
ccattcatc |
219 |
Q |
| |
|
||||||||| |
|
|
| T |
7700 |
ccattcatc |
7708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 181 - 380
Target Start/End: Original strand, 54908264 - 54908463
Alignment:
| Q |
181 |
tgaatacgctgaatgagcacaggggttgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgag |
280 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
54908264 |
tgaatacgccgaatgagtacaggggttgtcccattcatcttgcaattatttgttatcatatcaataagcaattttgaatcactttcaatgcaaagctgag |
54908363 |
T |
|
| Q |
281 |
aaataccgtccctccaagccatctctagaccaaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
54908364 |
aaataccgtccctccaagccaactctagaccaaggtacataccccacatctctgcatgaagagcatcacaagtgccaatcttgcggacaaaacctttgat |
54908463 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 54908123 - 54908268
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggt-aaggctgaagttggcaagtc |
109 |
Q |
| |
|
||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
54908123 |
cagagatgtcatcaaagaagagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaaggctgaagttggcaagcc |
54908222 |
T |
|
| Q |
110 |
aatcagcacttctgttgccttctctcaaagtgtgatgaacctgaat |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54908223 |
aatcagcacttcagttgccttctctcaaagtgtgatgaacctgaat |
54908268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 30970975 - 30970844
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
30970975 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttagcaagcca |
30970876 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgt |
142 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |
|
|
| T |
30970875 |
atcaacacttctgttgccttctctcaaagtgt |
30970844 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 206 - 380
Target Start/End: Original strand, 109079 - 109253
Alignment:
| Q |
206 |
ttgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctc |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
109079 |
ttgtcccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccaactc |
109178 |
T |
|
| Q |
306 |
tagaccaaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
109179 |
tagaccaaggtacataccccacatctctgtatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
109253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 107079 - 107160
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaag |
92 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107079 |
cagagatgtcatcaaagaggagactattgagctcactaggaggggtctccaaaatagtaaaattccatgaatccatggtaag |
107160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 11 - 380
Target Start/End: Complemental strand, 34544159 - 34543814
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtca |
110 |
Q |
| |
|
|||| |||||||||| ||||| | ||||||||||||| | || ||| ||||||| | |||||||||| ||||||||||||| | |||||||||| || | |
|
|
| T |
34544159 |
cagatatgtcatcaaagaggatattattgagctcactagaagaggtatccaaaagaataaaattccaagaatccatggtaacgttgaagttggctagacg |
34544060 |
T |
|
| Q |
111 |
atcagcacttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtc |
210 |
Q |
| |
|
|||| ||||||||||| |||||| ||||||||| ||||| ||| |||||||| ||||||| ||||||||| | |||||||||||| ||||||| |
|
|
| T |
34544059 |
atcaacacttctgttgttttctcttcaagtgtgattaacctaaatgcgccaattatgattcaatatattttga----gttgaatgagcaca-tggttgtc |
34543965 |
T |
|
| Q |
211 |
ccattcatcttgcaattatttgttatcatgtcaataagcaattttgaatcactttcaacgcaaagctgagaaataccgtccctccaagccatctctagac |
310 |
Q |
| |
|
|||||||| |||| ||||||||| | ||| ||||||| ||| ||| | ||||||| ||||||||||||| | |||||||| |
|
|
| T |
34543964 |
ccattcattttgctattatttgtcaccatctcaataaacaacttt-------------------acagagaaatgtcgtccctccaagcaaactctagac |
34543884 |
T |
|
| Q |
311 |
caaggtacatatcccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
||||||||||| | |||||||||||||||||| |||||||| | |||||||||| ||||||||||||||| |
|
|
| T |
34543883 |
caaggtacataccacacatctctgcatgaagaacatcacaaacaccaatcttgcagacaaaacctttgat |
34543814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 44938275 - 44938194
Alignment:
| Q |
33 |
actattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatca |
114 |
Q |
| |
|
|||||| ||||| || ||| |||||| ||||| | ||||||||| ||||||||||||||| |||| || |||||||||||| |
|
|
| T |
44938275 |
actattaagctctctaggaagggtctacaaaacaacaaaattccaagaatccatggtaaggttgaaattagcaagtcaatca |
44938194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 46911539 - 46911482
Alignment:
| Q |
323 |
cccacatctctgcatgaagagcatcacaagcgccaatcttgcggacaaaacctttgat |
380 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| ||||| |||||| |||||| ||||| |
|
|
| T |
46911539 |
cccacatctcagcatgcagagcatcacaagctccaattttgcggctaaaacccttgat |
46911482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 2515 - 2422
Alignment:
| Q |
11 |
cagagatgtcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
104 |
Q |
| |
|
|||||||||||| || || || ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2515 |
cagagatgtcattaaagatgagactattgagctcactagaaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggc |
2422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 41549970 - 41550211
Alignment:
| Q |
19 |
tcatcaaggaggaaactattgagctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcac |
118 |
Q |
| |
|
||||||| ||||| |||||| |||||||| |||||||||||||||| | ||||| ||| ||||||| |||||||||||| || ||||| ||||| | || |
|
|
| T |
41549970 |
tcatcaaagaggagactatttagctcactaggaggggtctccaaaacaacaaaatcccaagaatccacggtaaggctgaaattagcaagccaatcggtac |
41550069 |
T |
|
| Q |
119 |
ttctgttgccttctctcaaagtgtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtcccattcat |
218 |
Q |
| |
|
|| | |||| |||| | |||| |||||||||| || |||||| |||||| ||||| |||| |||||| | || | | |||||| |||||||| | |
|
|
| T |
41550070 |
ttttattgctctctcgccaagtatgatgaacctcaacgtgccaactacgatccaaaagatttctgatacgccgcatcaacgaaggggtcgtcccattagt |
41550169 |
T |
|
| Q |
219 |
cttgcaattatttgttatcatgtcaataagcaattttgaatc |
260 |
Q |
| |
|
| |||| || ||||| | |||||||||||||||||||||||| |
|
|
| T |
41550170 |
cctgcagttgtttgtaaccatgtcaataagcaattttgaatc |
41550211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 218447 - 218510
Alignment:
| Q |
86 |
tggtaaggctgaagttggcaagtcaatcagcacttctgttgccttctc-tcaaagtgtgatgaa |
148 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||| |||||||||| ||||||| ||||||| |
|
|
| T |
218447 |
tggtaaggctgaaattagcaagccaatcagcacttctattgccttctcgtcaaagtatgatgaa |
218510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 262
Target Start/End: Complemental strand, 6262351 - 6262130
Alignment:
| Q |
41 |
gctcactgggaggggtctccaaaatagtaaaattccatgaatccatggtaaggctgaagttggcaagtcaatcagcacttctgttgccttctctcaaagt |
140 |
Q |
| |
|
||||||| |||||| ||| ||||| | ||||||||| ||| || ||||||||||| || ||||||||||||||||||| |||||||||| |||| |
|
|
| T |
6262351 |
gctcactaggagggttcttcaaaacaacaaaattccaataattcacagtaaggctgaaattaacaagtcaatcagcacttctattgccttctcgtcaagt |
6262252 |
T |
|
| Q |
141 |
gtgatgaacctgaatctgccaattacgattcaaaatattttgaatacgctgaatgagcacaggggttgtcccattcatcttgcaattatttgttatcatg |
240 |
Q |
| |
|
|||| ||||| || |||||| |||| | || | |||| ||| | |||| | | |||||| || ||||| ||||||||||||||| | |||| |
|
|
| T |
6262251 |
atgataaacctcaacgtgccaactacggtcgaatagatttctgatatgtcgaatcaaccaaggggtcgtaccattagtcttgcaattatttgaaaccatg |
6262152 |
T |
|
| Q |
241 |
tcaataagcaattttgaatcac |
262 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
6262151 |
tcaataagcagttttgaatcac |
6262130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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