View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_2 (Length: 730)
Name: NF20435_low_2
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 668; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 1 - 720
Target Start/End: Complemental strand, 20992971 - 20992253
Alignment:
| Q |
1 |
acttataatattctacgatatattgttgatcatacaattttttgcgtatattgtttatctatacaactctgttactcacaaattgcaccactttactggt |
100 |
Q |
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| T |
20992971 |
acttataatattctacgatatattgttgatcatacgattttttgcgtatattgtt-atctatacaactctgttactcacaaattgcgccactttactggt |
20992873 |
T |
|
| Q |
101 |
gcttagtctgagttcaagttgcctgctcccacttgaattttacttatgagacttgtgttaatatgtagcttctggtacatttgtgagagtcgtgtacgtg |
200 |
Q |
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| T |
20992872 |
gcttagtctgagttcaagttgcctgctcccacttgaattttacttatgagacttgtgttaaaatgtagcttctggtacatttgtgagagtcgtgtacatg |
20992773 |
T |
|
| Q |
201 |
taggtaacataattctctacaagattcatttgacttcttgcttcttacaggccctatttgatctacaggaacctggttgttatagtccttcagagttcag |
300 |
Q |
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| T |
20992772 |
taggtaacataattctctacaagattcatttgacttcttgcttcttacaggccctatttgatctacaggaacctggttgttatagtccttcagagttcag |
20992673 |
T |
|
| Q |
301 |
atgcaatgcaagtatggacatacatatttggtaaattttattagaagatatcaagtgatccattatgttgggggtcatagagaatggtccctttgtcgga |
400 |
Q |
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| T |
20992672 |
atgcaatgcaagtatggacacacatatttggtaaattttattagaagatatcaagtgatccattatgttgggggtcatagagaatggtccctttgtcgga |
20992573 |
T |
|
| Q |
401 |
tattattcatgtcgctcttgaagtaatgctacaaagcagctgggaaagctgtgtaacgaatggcagttcaggcctaacaatatttagagtgccgaatttt |
500 |
Q |
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| T |
20992572 |
tattattcatgtcgctcttgaagcaatgctacaaagcagctgggaaagctgtgtaacgaatggtagttcaggcctaacaatatttagagtgccgaatttt |
20992473 |
T |
|
| Q |
501 |
gtttatgtatcatatgtatgtgttacttgatgatctaccttgagtttttgggttgttcagtgagatcgaagtctcgttgcatgaattgtattgataaaac |
600 |
Q |
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| T |
20992472 |
gtttatgtatcatatgcatgtgttatttgatgatctaccttgagtttttgggttgttcagtgagatcgaagtctcgctgcatgaattgtattgataaaac |
20992373 |
T |
|
| Q |
601 |
cttggtgattgatagtattgtaaaggatggatgctaatttgaatatttgttttgcgggctattttgaagaacagttttgtagttctgtggtgtgctagtt |
700 |
Q |
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| T |
20992372 |
cttggtgattgatagtattgtaaaggatggatgctaatttgaatatttgttttgcgggctattttgaagaacagttttgtagttctatggtgtgctagtt |
20992273 |
T |
|
| Q |
701 |
tcacttttgatgatattctt |
720 |
Q |
| |
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|||||||||||||||||||| |
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| T |
20992272 |
tcacttttgatgatattctt |
20992253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 55 - 364
Target Start/End: Original strand, 20978567 - 20978863
Alignment:
| Q |
55 |
ttatctatacaactctgttactcacaaattgcaccactttactggtgcttagtctgagttcaagttgcctgctcccacttgaattttacttatgagactt |
154 |
Q |
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| T |
20978567 |
ttatctatacgactctgttactcacaacttgcaccactgaactggtgcttagtttgagttcaagttgcctgctcccacttgaacttaacttatgaaa--- |
20978663 |
T |
|
| Q |
155 |
gtgttaatatgtagcttctggtacatttgtgagagtcgtgtacgtgtaggtaacataattctctacaagattcatttgacttcttgcttcttacaggccc |
254 |
Q |
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| T |
20978664 |
---ttaaaatggagcttctggtacatttgtaagagttgtgta------ggtaacataattctctata-gcttcatttgacttcttgcttcttacatgacc |
20978753 |
T |
|
| Q |
255 |
t-atttgatctacaggaacctggttgttatagtccttcagagttcagatgcaatgcaagtatggacatacatatttggtaaattttattagaagatatca |
353 |
Q |
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| T |
20978754 |
ttatttgatcgacaggaacccagttgttatagtc-ttcagagttcaaatgcaatacaagtatggacatacatacttggaaacttcgattagaagatatta |
20978852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 207 - 434
Target Start/End: Complemental strand, 20980015 - 20979787
Alignment:
| Q |
207 |
acataattctctacaagattcatttgacttcttgcttcttacaggc-cctatttgatctacaggaacctggttgttatagtccttcagagttcagatgca |
305 |
Q |
| |
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|||||||||||| |||||||||| |||||||| |||||||| | |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
20980015 |
acataattctctgtaagattcattcaacttcttgattcttacatgatcctatttgatctgcaggaacctggttgttataatccttcagagttcagatgca |
20979916 |
T |
|
| Q |
306 |
atgcaagtatggacatacatatttggtaaattttattagaagatatcaagtgatccattatgttgggggtcatagagaatggtccctttgtcggatatta |
405 |
Q |
| |
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| T |
20979915 |
atgcaagtatggacatacatactaggcaaagtttattagaagatattaagtgatccattgtgttgggggttatggacaatggtccctttgtcagatatta |
20979816 |
T |
|
| Q |
406 |
ttcatgtcgctcttgaagtaatgctacaa |
434 |
Q |
| |
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||||||| | ||| |||| |||| ||||| |
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| T |
20979815 |
ttcatgtagatctagaagcaatggtacaa |
20979787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 309 - 479
Target Start/End: Original strand, 20990885 - 20991055
Alignment:
| Q |
309 |
caagtatggacatacatatttggtaaattttattagaagatatcaagtgatccattatgttgggggtcatagagaatggtccctttgtcggatattattc |
408 |
Q |
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||||||||| |||||||| |||| || |||||||||||||| | ||||||||||||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
20990885 |
caagtatggccatacatacttggaaacttttattagaagattttaagtgatccattatgttgggggttatggacaatggtccctttgtcggatattattc |
20990984 |
T |
|
| Q |
409 |
atgtcgctcttgaagtaatgctacaaagcagctgggaaagctgtgtaacgaatggcagttcaggcctaaca |
479 |
Q |
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| T |
20990985 |
acgtagctatagaagcaatggtacaagacatttgggaaagttgtataatgagtggcagttcaggcctaaca |
20991055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 575
Target Start/End: Original strand, 20991115 - 20991177
Alignment:
| Q |
513 |
tatgtatgtgttacttgatgatctaccttgagtttttgggttgttcagtgagatcgaagtctc |
575 |
Q |
| |
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| T |
20991115 |
tatgtatgtgttatttgatgatcttccttgagtatttgggttgttcattgaggtcaaagtctc |
20991177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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