View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20435_low_20 (Length: 396)

Name: NF20435_low_20
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20435_low_20
NF20435_low_20
[»] chr7 (4 HSPs)
chr7 (17-378)||(11242191-11242552)
chr7 (17-345)||(11268864-11269197)
chr7 (17-345)||(11281004-11281337)
chr7 (107-244)||(6847989-6848127)
[»] chr8 (2 HSPs)
chr8 (61-220)||(9798655-9798816)
chr8 (62-211)||(15201683-15201837)
[»] chr3 (1 HSPs)
chr3 (108-244)||(16999332-16999468)
[»] chr1 (4 HSPs)
chr1 (234-328)||(17735150-17735244)
chr1 (98-244)||(27318397-27318544)
chr1 (211-370)||(12727245-12727395)
chr1 (155-242)||(8236099-8236186)
[»] chr5 (2 HSPs)
chr5 (135-244)||(42687841-42687950)
chr5 (172-239)||(20684884-20684951)
[»] chr4 (1 HSPs)
chr4 (126-201)||(21276696-21276772)


Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 11242191 - 11242552
Alignment:
Q  17 tgaatagttggaaaaacacacggtccttgctgaccatgtccaatattttaacacttggaagctgaaaagtgcacgatccggagaccgtgtgtttttgctg 116  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11242191 tgaatagctggaaaaacacacggtccttgctgaccatgtccaatattttaacacttggaagctgaaaagtgcacgatccggagaccgtatgtttttgctg 11242290  T
Q  117 tcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11242291 tcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtct 11242390  T
Q  217 tccatcatacctgtaatcatcttggaatcttgtgaacttgttttagattgaatcaaacttaacattgttctaagtttattcttgcttttattttgtgcac 316  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11242391 tccatcatacctgtaatcattttggaatcttgtgaacttgttttagattgaatcaaacttaacattgttctaagtttattcttgattttattttgtgcac 11242490  T
Q  317 tttacattcttgaattttactttcttgttctttatatttatgcaatttatcttcaacaattt 378  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  11242491 tttacattcttgaatgttactttcttgttctttatatttatgcaatttatcttcagcaattt 11242552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 345
Target Start/End: Complemental strand, 11269197 - 11268864
Alignment:
Q  17 tgaatagttggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatccgg-----agaccgtgtgttt 110  Q
    ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | || |      || ||||| ||||    
T  11269197 tgaatagctggaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgctatgcaggccgtgcgttt 11269098  T
Q  111 ttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaat 210  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| | |||||||| |  |||||||| |||||||||| |||||||||| ||||||     
T  11269097 ttgctgttagctagagctgttacaaaactctttggttttcctatttttatgcttgtaa-tatgagtttaaggcattgtcttaaggttttaggttataaaa 11268999  T
Q  211 aggtcttccatcatacctgtaatcatcttggaatcttgtgaacttgttttagattgaatcaaacttaacattgttctaagtttattcttgcttttatttt 310  Q
    ||||||||||||| || ||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  11268998 aggtcttccatcaaacttgtaatcatcttggaatccagtgaacttattttagattgaatcaaagttaacattgttatgagtttattcttgcttttatttt 11268899  T
Q  311 gtgcactttacattcttgaattttactttcttgtt 345  Q
    |||||||||||| ||||||| ||||||||||||||    
T  11268898 gtgcactttacactcttgaactttactttcttgtt 11268864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 345
Target Start/End: Original strand, 11281004 - 11281337
Alignment:
Q  17 tgaatagttggaaaaacacacggtccttgctga-ccatgtccaatattttaacacttggaagctgaaaagtgcacgatccgg-----agaccgtgtgttt 110  Q
    ||||||| | ||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | || |      |  ||||| ||||    
T  11281004 tgaatagctagaaaaacacacggtccttgctaatccatgtccagtattttaacacttggaagctgaaaagtgcatggtctgttatgcaagccgtgcgttt 11281103  T
Q  111 ttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaat 210  Q
    ||||||| ||| |||||||||| |||||||||||||||||||||||| |||||||||| |  |||||||||||||||| || |||||||||| ||||||     
T  11281104 ttgctgttagctagagctgttacaaaactctttggttttcctatttttaagcttgtaa-tatgagtttaatgcattgtgttaaggttttaggttataaaa 11281202  T
Q  211 aggtcttccatcatacctgtaatcatcttggaatcttgtgaacttgttttagattgaatcaaacttaacattgttctaagtttattcttgcttttatttt 310  Q
    ||||||||||||| || |||||||||||| |||||  |||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||    
T  11281203 aggtcttccatcaaacttgtaatcatcttcgaatccggtgaacttgttttagattgaatcaaagttaacattgttatgagtttattcttgcttttatttt 11281302  T
Q  311 gtgcactttacattcttgaattttactttcttgtt 345  Q
    |||||||||||||||||||| ||||||||||||||    
T  11281303 gtgcactttacattcttgaactttactttcttgtt 11281337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 107 - 244
Target Start/End: Complemental strand, 6848127 - 6847989
Alignment:
Q  107 gtttttgctgtcagcaagagctgttagaaaactctttggttttccta-ttttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggcta 205  Q
    |||||| |||||||   ||||| ||| ||||||||||| ||||| |  ||||||||| ||||||  |||||||||||| ||| ||||||||| |||||||    
T  6848127 gtttttcctgtcagttggagcttttacaaaactctttgattttctttgttttaaagcctgtaaaaacgagtttaatgccttgccttgaggttctaggcta 6848028  T
Q  206 taaataggtcttccatcatacctgtaatcatcttggaat 244  Q
    ||||||||||   ||||| || |||| ||||||||||||    
T  6848027 taaataggtccctcatcagacttgtattcatcttggaat 6847989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 61 - 220
Target Start/End: Complemental strand, 9798816 - 9798655
Alignment:
Q  61 attttaacacttggaagctgaaaagtgcacgatccgg-agaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttt-tcctatttta 158  Q
    ||||||||||||||||| ||||||||||||| |   | |||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  9798816 attttaacacttggaagttgaaaagtgcacggttgtgcagaccgtgcgtttttgctgtcagctagagctgttacaaaactctttggtttctcctatttta 9798717  T
Q  159 aagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtcttcca 220  Q
    |||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||| ||||    
T  9798716 aagcttgtaaattcgagtttaatgccttgtctagaggttctaggctataaataggtcatcca 9798655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 62 - 211
Target Start/End: Original strand, 15201683 - 15201837
Alignment:
Q  62 ttttaacacttggaagctgaaaagtgcacgatcc-----ggagaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttttcctattt 156  Q
    |||||||||||| ||||||||||||||||| ||      | | |||||| ||||||| ||||| | |||||||||| |||||||||||||||||||||||    
T  15201683 ttttaacacttgtaagctgaaaagtgcacggtctactgtgcataccgtgcgtttttgttgtcaactagagctgttacaaaactctttggttttcctattt 15201782  T
Q  157 taaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaata 211  Q
    ||||| |||||||||| ||||||||   ||||||||||||| |||||||||||||    
T  15201783 taaagtttgtaaatccaagtttaatatcttgtcttgaggttctaggctataaata 15201837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 16999468 - 16999332
Alignment:
Q  108 tttttgctgtcagcaagagctgttagaaaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctata 207  Q
    ||||||||||||||| ||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||    
T  16999468 tttttgctgtcagcaggagatgttacaaaactcttcggttttcctattttaaagcttgtaaatccgagtttaatgtcatgtcttgaggttttaggctata 16999369  T
Q  208 aataggtcttccatcatacctgtaatcatcttggaat 244  Q
    |||||||| || |||| || | |||||||||||||||    
T  16999368 aataggtcctcaatcagacttataatcatcttggaat 16999332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 17735244 - 17735150
Alignment:
Q  234 catcttggaatcttgtgaacttgttttagattgaatcaaacttaacattgttctaagtttattcttgcttttattttgtgcactttacattcttg 328  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17735244 catcttggaatctggtgaacttgttttagattgaatcaaagttaatattgttctaagtttattcttgcttttattttctgcactttacattcttg 17735150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 98 - 244
Target Start/End: Original strand, 27318397 - 27318544
Alignment:
Q  98 agaccgtgtgtttttgctgtcagcaagagctgttagaaaactctttggttttcc-tattttaaagcttgtaaatccgagtttaatgcattgtcttgaggt 196  Q
    |||||||| |||||||||||||||  ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||      
T  27318397 agaccgtgcgtttttgctgtcagctggagctgttacaaaactctttggttttccctattttaaagcttgtaaattcgagtttaatgccttgtcttgagaa 27318496  T
Q  197 tttaggctataaataggtcttccatcatacctgtaatcatcttggaat 244  Q
    | || | |||||||||||| ||| ||| |  |||||||||||||||||    
T  27318497 tctatgttataaataggtcctccgtcagatttgtaatcatcttggaat 27318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 211 - 370
Target Start/End: Complemental strand, 12727395 - 12727245
Alignment:
Q  211 aggtcttccatcatacctgtaatcatcttggaatcttgtgaacttgttttagattgaatcaaacttaacattgttctaagtttattcttgc-ttttattt 309  Q
    ||||| ||||||| |  |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12727395 aggtcctccatcagatttgtaatcatcttggaatcttgtcaacttgtttttgattgaatcaaagttaacattgttctaagtttattcttgctttttattt 12727296  T
Q  310 tgtgcactttacattcttgaattttactttcttgttctttatatttatgcaatttatcttc 370  Q
    | |||||||           ||||||||||||||||||||| ||||  |||||||||||||    
T  12727295 tctgcactt----------cattttactttcttgttctttacatttcagcaatttatcttc 12727245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 155 - 242
Target Start/End: Original strand, 8236099 - 8236186
Alignment:
Q  155 tttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtcttccatcatacctgtaatcatcttgga 242  Q
    ||||||| |||||| | || ||||||||| ||||||||||||||||||||||||| || || ||||||| || |||||| ||||||||    
T  8236099 tttaaagattgtaatttcgtgtttaatgccttgtcttgaggttttaggctataaaaagatcatccatcagacttgtaatgatcttgga 8236186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 135 - 244
Target Start/End: Complemental strand, 42687950 - 42687841
Alignment:
Q  135 aaactctttggttttcctattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttaggctataaataggtcttccatcatacctgtaatc 234  Q
    ||||||||||||||||| |||||||||||| |||||  ||||||||||  ||||||||||||||||||||||||| ||||| ||||||| || |||||||    
T  42687950 aaactctttggttttcccattttaaagcttataaatatgagtttaatgtcttgtcttgaggttttaggctataaacaggtcctccatcaaacttgtaatc 42687851  T
Q  235 atcttggaat 244  Q
    ||||||||||    
T  42687850 atcttggaat 42687841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 20684884 - 20684951
Alignment:
Q  172 cgagtttaatgcattgtcttgaggttttaggctataaataggtcttccatcatacctgtaatcatctt 239  Q
    |||||||||||  |||||||||||||| |||||||||||||||| |||||||||| ||||||||||||    
T  20684884 cgagtttaatgtcttgtcttgaggtttcaggctataaataggtcctccatcatacttgtaatcatctt 20684951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 21276696 - 21276772
Alignment:
Q  126 gctgttagaaaactctttggttttcc-tattttaaagcttgtaaatccgagtttaatgcattgtcttgaggttttag 201  Q
    ||||||| |||||||||||||||||| || ||||||| |||||| | || ||||||||  |||||||||| ||||||    
T  21276696 gctgttacaaaactctttggttttccttaatttaaagtttgtaatttcgtgtttaatgtcttgtcttgagattttag 21276772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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