View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20435_low_22 (Length: 388)
Name: NF20435_low_22
Description: NF20435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20435_low_22 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 40048679 - 40048303
Alignment:
| Q |
18 |
aagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcccaacacagcagcaacagcgacagcaacag |
117 |
Q |
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| T |
40048679 |
aagccaaatatgaatcaaattatcttttccttctcactctttctactcatgttctcctcattgtattctcccaacatagcagcaacagcgacagcaacag |
40048580 |
T |
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| Q |
118 |
caccagca------gcgtcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacctcaga |
211 |
Q |
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| T |
40048579 |
caccagcacaagcagcatcaccgaaacatgccccggcaccaaaagcagcgtcaccaacatcgacaaaaccattagtcccgacattaccagacacctcaga |
40048480 |
T |
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| Q |
212 |
ttccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40048479 |
ttccaccccggacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaac |
40048380 |
T |
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| Q |
312 |
tcacaactcatatcaccaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagc |
388 |
Q |
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| T |
40048379 |
tcacaactcatatcagcaaaaagcggcggattaacaatcttggcaccggatgactcagctttctcgcatctcaaagc |
40048303 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 350
Target Start/End: Original strand, 22056082 - 22056210
Alignment:
| Q |
222 |
gacgacataacaaaaatcctcaaaaaggcgaaaacattcacaatcctaacccgtctcctaagaacaacacaaatcgtggacaacctaaactcacaactca |
321 |
Q |
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|||||||| |||| |||||| |||||||||||||||||| | |||||| ||||||||||| ||||||| ||||| || || | ||||||| || |||| |
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| T |
22056082 |
gacgacatcacaacaatccttaaaaaggcgaaaacattctccgtcctaatccgtctcctaaaaacaacagaaatcatgagcagcgtaaactcgcagctca |
22056181 |
T |
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| Q |
322 |
tatcaccaaaaagcggcggattaacaatc |
350 |
Q |
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| T |
22056182 |
tcacagcaaaaaacggcggcttaacaatc |
22056210 |
T |
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